Wall clock time and date at job start Mon Mar 30 2020 05:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46493 * 120.00214 * 2 1 4 4 C 1.50697 * 109.47456 * 89.99847 * 3 2 1 5 5 H 1.08005 * 119.99915 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00138 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00151 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99889 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47232 * 59.99825 * 8 6 4 10 10 H 1.48505 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47307 * 299.99494 * 8 6 4 12 12 C 1.34779 * 119.99581 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00064 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00069 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.47362 * 173.92436 * 14 12 2 16 16 C 1.47904 * 111.00023 * 294.39246 * 15 14 12 17 17 C 1.53991 * 107.05599 * 214.15457 * 16 15 14 18 18 H 1.08998 * 110.31023 * 120.23969 * 17 16 15 19 19 O 1.42902 * 110.30912 * 242.30523 * 17 16 15 20 20 C 1.54597 * 105.14072 * 1.21996 * 17 16 15 21 21 C 1.48529 * 111.00381 * 176.99184 * 15 14 12 22 22 H 1.09000 * 110.66491 * 41.28302 * 21 15 14 23 23 C 1.53002 * 110.66809 * 278.15741 * 21 15 14 24 24 O 1.42901 * 109.47233 * 294.99972 * 23 21 15 25 25 H 1.09000 * 109.47635 * 270.00626 * 1 2 3 26 26 H 1.08999 * 109.47313 * 149.99877 * 1 2 3 27 27 H 1.09010 * 109.46648 * 30.00493 * 1 2 3 28 28 H 1.09005 * 109.47166 * 209.99457 * 3 2 1 29 29 H 1.09000 * 109.47481 * 329.99247 * 3 2 1 30 30 H 0.96995 * 119.99672 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47389 * 293.92506 * 14 12 2 32 32 H 1.09001 * 109.47246 * 53.92777 * 14 12 2 33 33 H 1.08998 * 109.91290 * 333.50609 * 16 15 14 34 34 H 1.08997 * 109.91741 * 94.60237 * 16 15 14 35 35 H 0.96700 * 114.00220 * 298.55154 * 19 17 16 36 36 H 1.09001 * 110.72076 * 140.32189 * 20 17 16 37 37 H 1.09001 * 110.72395 * 263.42379 * 20 17 16 38 38 H 1.09003 * 109.46764 * 54.99463 * 23 21 15 39 39 H 1.08994 * 109.47503 * 175.00093 * 23 21 15 40 40 H 0.96700 * 114.00387 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1260 2.8780 1.6727 7 7 3.5534 3.6181 0.6730 8 14 3.4367 3.4176 3.4338 9 1 4.2394 2.3830 4.1343 10 1 4.1794 4.7036 3.4338 11 1 2.1390 3.5950 4.1335 12 6 2.1388 -1.1673 0.0005 13 8 3.3516 -1.1674 0.0010 14 6 1.3852 -2.4723 0.0005 15 7 2.3330 -3.5851 -0.1455 16 6 2.9928 -3.5493 -1.4687 17 6 3.2255 -5.0100 -1.8971 18 1 2.7088 -5.2163 -2.8344 19 8 4.6239 -5.2697 -2.0350 20 6 2.6311 -5.8654 -0.7547 21 6 1.6328 -4.8932 -0.0773 22 1 0.6950 -4.8568 -0.6316 23 6 1.3867 -5.2989 1.3772 24 8 2.6392 -5.5215 2.0282 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 -0.8900 -0.5138 27 1 -0.3633 0.8900 -0.5140 28 1 3.1500 1.1382 -0.5138 29 1 1.6085 2.0283 -0.5139 30 1 4.0302 4.4439 0.8503 31 1 0.8422 -2.5784 0.9397 32 1 0.6798 -2.4846 -0.8304 33 1 2.3485 -3.0485 -2.1913 34 1 3.9453 -3.0247 -1.3946 35 1 5.0598 -4.7293 -2.7082 36 1 2.1108 -6.7355 -1.1550 37 1 3.4101 -6.1711 -0.0563 38 1 0.8471 -4.5026 1.8901 39 1 0.7956 -6.2142 1.4042 40 1 2.5594 -5.7821 2.9560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698161548.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:29 Heat of formation + Delta-G solvation = -148.512979 kcal Electronic energy + Delta-G solvation = -21970.456580 eV Core-core repulsion = 18591.430932 eV Total energy + Delta-G solvation = -3379.025648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14796 -39.83560 -37.58972 -36.71450 -36.31099 -34.74449 -32.62192 -30.61491 -29.99182 -27.76512 -27.02015 -25.84894 -24.40262 -22.10238 -21.25920 -19.96351 -18.71669 -18.42669 -18.12100 -17.81024 -17.21860 -16.96557 -16.62027 -16.02105 -15.82155 -15.49864 -14.64640 -14.50804 -14.41555 -14.17661 -13.97366 -13.88880 -13.62449 -13.45928 -13.19996 -12.90655 -12.77679 -12.66481 -12.57143 -12.43843 -12.18665 -11.89558 -11.73126 -11.52489 -10.97623 -10.75562 -10.65272 -10.55100 -9.42007 -9.27629 -8.23501 -6.38356 1.34593 1.39868 1.46793 1.86027 2.24144 2.40172 2.95213 3.05736 3.23958 3.44582 3.60284 3.80220 3.90973 4.08301 4.14837 4.27493 4.32333 4.39502 4.46529 4.54339 4.56580 4.68231 4.74740 4.83387 4.92130 4.96814 5.00883 5.08680 5.19819 5.32906 5.55163 5.81952 5.88920 6.02249 6.05774 6.69292 6.81063 6.83880 7.07553 7.28077 7.53772 8.83280 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.004544 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.926188 B = 6160.499091 C = 6346.090298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.258 1.258 12 C 0.492 3.508 13 O -0.581 6.581 14 C 0.044 3.956 15 N -0.512 5.512 16 C 0.013 3.987 17 C 0.096 3.904 18 H 0.092 0.908 19 O -0.581 6.581 20 C -0.104 4.104 21 C 0.060 3.940 22 H 0.101 0.899 23 C 0.088 3.912 24 O -0.585 6.585 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.070 0.930 28 H -0.006 1.006 29 H 0.025 0.975 30 H 0.267 0.733 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.391 0.609 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 -19.540 -3.616 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.206 1.206 10 H -0.201 1.201 11 H -0.182 1.182 12 C 0.281 3.719 13 O -0.461 6.461 14 C -0.087 4.087 15 N -0.238 5.238 16 C -0.116 4.116 17 C 0.037 3.963 18 H 0.110 0.890 19 O -0.388 6.388 20 C -0.142 4.142 21 C -0.047 4.047 22 H 0.118 0.882 23 C 0.011 3.989 24 O -0.392 6.392 25 H 0.076 0.924 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.012 0.988 29 H 0.043 0.957 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.240 0.760 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.623 -19.561 -3.371 22.513 hybrid contribution 0.014 1.345 0.275 1.373 sum -10.609 -18.216 -3.096 21.306 Atomic orbital electron populations 1.21935 0.77814 1.03997 1.02468 1.48205 1.08430 1.06258 1.71800 1.18725 0.91016 0.80397 0.95885 1.21675 1.36933 1.06493 0.93114 0.93131 1.25864 0.94840 0.96417 1.02042 1.70041 1.38912 1.14824 1.33087 0.85476 0.78911 0.77316 0.79153 1.20648 1.20137 1.18228 1.21236 0.88012 0.86301 0.76377 1.90649 1.16567 1.87790 1.51071 1.22212 0.93835 0.87841 1.04818 1.64329 1.27260 1.01355 1.30878 1.23576 1.00053 0.98271 0.89657 1.22834 0.82298 0.92131 0.99017 0.89026 1.86504 1.22281 1.66250 1.63814 1.22435 0.98334 0.97417 0.96038 1.23128 0.97146 0.87828 0.96623 0.88159 1.22131 0.85479 0.99941 0.91395 1.86599 1.31004 1.92019 1.29583 0.92375 0.88198 0.91085 0.98812 0.95730 0.92381 0.86413 0.88890 0.93082 0.92855 0.75967 0.87645 0.91227 0.93380 0.90005 0.76280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.31 127.77 1.32 3.64 16 2 N -0.61 -26.55 2.86 -851.14 -2.43 -28.98 16 3 C 0.26 14.52 5.20 85.63 0.45 14.96 16 4 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.43 5.46 84.65 0.46 0.89 16 7 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 8 Si 0.97 46.12 29.54 68.60 2.03 48.15 16 9 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 C 0.49 21.27 7.36 87.66 0.64 21.91 16 13 O -0.58 -32.05 14.60 -3.03 -0.04 -32.09 16 14 C 0.04 1.26 3.90 85.56 0.33 1.59 16 15 N -0.51 -15.56 4.66 -862.81 -4.02 -19.58 16 16 C 0.01 0.38 5.46 86.44 0.47 0.86 16 17 C 0.10 2.24 4.36 31.47 0.14 2.38 16 18 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 19 O -0.58 -15.47 13.26 -148.98 -1.98 -17.45 16 20 C -0.10 -2.25 6.17 31.80 0.20 -2.05 16 21 C 0.06 1.22 2.74 45.26 0.12 1.35 16 22 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 23 C 0.09 1.59 6.96 71.98 0.50 2.10 16 24 O -0.58 -14.09 12.36 -148.98 -1.84 -15.93 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 1.94 6.28 -2.39 -0.01 1.93 16 27 H 0.07 2.01 7.89 -2.38 -0.02 2.00 16 28 H -0.01 -0.40 7.42 -2.38 -0.02 -0.42 16 29 H 0.02 1.37 7.89 -2.39 -0.02 1.35 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.12 2.92 7.22 -2.39 -0.02 2.90 16 32 H 0.09 1.94 6.87 -2.39 -0.02 1.92 16 33 H 0.05 1.37 7.64 -2.39 -0.02 1.36 16 34 H 0.05 2.10 7.14 -2.39 -0.02 2.08 16 35 H 0.39 7.55 9.11 -74.06 -0.67 6.88 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.98 6.95 -2.39 -0.02 1.97 16 38 H 0.05 0.84 7.24 -2.39 -0.02 0.82 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.39 5.77 9.12 -74.06 -0.68 5.10 16 Total: -1.00 -87.25 326.67 -3.42 -90.68 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.29 Total: 16.92 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 4.87 Total: 15.49 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -6.17 Total: -105.76 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -3.86 Total: -65.48 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -87.25 -3.42 -90.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698161548.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.837 kcal (2) G-P(sol) polarization free energy of solvation -87.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds