Wall clock time and date at job start Mon Mar 30 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00318 * 0.02562 * 12 2 1 15 15 N 1.46895 * 109.47428 * 180.02562 * 14 12 2 16 16 C 1.48565 * 110.99602 * 285.41319 * 15 14 12 17 17 C 1.54385 * 104.59427 * 200.95662 * 16 15 14 18 18 H 1.08992 * 110.40984 * 264.91649 * 17 16 15 19 19 O 1.42897 * 110.31945 * 142.75119 * 17 16 15 20 20 C 1.54259 * 105.05917 * 23.85590 * 17 16 15 21 21 C 1.48565 * 111.00298 * 169.99799 * 15 14 12 22 22 H 1.08997 * 110.40665 * 40.25819 * 21 15 14 23 23 C 1.52997 * 110.41009 * 277.81622 * 21 15 14 24 24 O 1.42894 * 109.47223 * 294.99994 * 23 21 15 25 25 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 26 26 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 27 27 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 28 28 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 29 29 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 30 30 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47054 * 299.99977 * 14 12 2 32 32 H 1.09003 * 109.47164 * 59.99309 * 14 12 2 33 33 H 1.08993 * 110.41249 * 319.74048 * 16 15 14 34 34 H 1.09008 * 110.40806 * 82.18383 * 16 15 14 35 35 H 0.96693 * 114.00367 * 64.37035 * 19 17 16 36 36 H 1.08997 * 110.32341 * 241.10294 * 20 17 16 37 37 H 1.08996 * 110.32108 * 118.89213 * 20 17 16 38 38 H 1.09005 * 109.47088 * 54.99850 * 23 21 15 39 39 H 1.08992 * 109.47043 * 174.99551 * 23 21 15 40 40 H 0.96706 * 114.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5540 3.6176 0.6732 8 14 3.4387 3.4163 3.4339 9 1 4.7337 2.8588 3.9002 10 1 3.4869 4.8993 3.4968 11 1 2.3436 2.9194 4.3050 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 7 2.3401 -3.5888 -0.0014 16 6 2.9672 -3.7533 -1.3382 17 6 3.4851 -5.2076 -1.3486 18 1 4.5345 -5.2395 -1.0561 19 8 3.3139 -5.7860 -2.6440 20 6 2.6170 -5.9496 -0.3115 21 6 1.6477 -4.8812 0.2383 22 1 0.7018 -4.9117 -0.3024 23 6 1.4149 -5.0921 1.7357 24 8 2.6735 -5.2206 2.4000 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6083 2.0284 -0.5138 29 1 3.1498 1.1384 -0.5139 30 1 4.0308 4.4436 0.8505 31 1 0.7585 -2.5307 0.8881 32 1 0.7591 -2.5294 -0.8919 33 1 2.2278 -3.6073 -2.1255 34 1 3.7949 -3.0542 -1.4583 35 1 3.8361 -5.3598 -3.3373 36 1 3.2403 -6.3442 0.4909 37 1 2.0604 -6.7550 -0.7906 38 1 0.8746 -4.2376 2.1432 39 1 0.8293 -5.9985 1.8882 40 1 2.6022 -5.3574 3.3547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698161549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:32 Heat of formation + Delta-G solvation = -115.628735 kcal Electronic energy + Delta-G solvation = -21937.244242 eV Core-core repulsion = 18559.644562 eV Total energy + Delta-G solvation = -3377.599680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87766 -38.43182 -36.73912 -35.53774 -34.66009 -32.62234 -31.46091 -29.65974 -28.13985 -26.46010 -25.45882 -24.68333 -22.53022 -21.10168 -20.15421 -18.45243 -17.78048 -17.22142 -16.52603 -16.38206 -15.72930 -15.32777 -15.09320 -14.58439 -14.50106 -14.02418 -13.90752 -13.31371 -13.21877 -13.05424 -12.47813 -12.40318 -12.18486 -11.96557 -11.79336 -11.60391 -11.31842 -11.17361 -10.89959 -10.81606 -10.69721 -10.55518 -10.12633 -10.03127 -9.91805 -9.59322 -8.90209 -8.40870 -8.27351 -7.59216 -6.01712 -4.06133 3.33338 3.39089 3.40163 3.49097 3.61512 4.06537 4.21061 4.34736 4.47938 4.54070 4.79673 4.94642 5.21401 5.23497 5.23983 5.25883 5.33519 5.39677 5.43192 5.45771 5.67460 5.72706 5.75028 5.89104 5.93155 6.06478 6.19350 6.21553 6.84657 6.89259 7.14830 7.46880 7.55712 7.58710 7.68521 7.95221 8.26629 8.46412 8.94251 9.18049 9.59034 11.06404 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.004567 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.511074 B = 6129.169528 C = 6474.455712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.607 5.607 3 C 0.247 3.753 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.507 3.493 13 O -0.521 6.521 14 C 0.025 3.975 15 N -0.469 5.469 16 C 0.005 3.995 17 C 0.099 3.901 18 H 0.071 0.929 19 O -0.570 6.570 20 C -0.107 4.107 21 C 0.058 3.942 22 H 0.064 0.936 23 C 0.092 3.908 24 O -0.554 6.554 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.379 0.621 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -17.785 -2.318 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.341 5.341 3 C 0.128 3.872 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.292 3.708 13 O -0.396 6.396 14 C -0.107 4.107 15 N -0.194 5.194 16 C -0.123 4.123 17 C 0.040 3.960 18 H 0.089 0.911 19 O -0.375 6.375 20 C -0.145 4.145 21 C -0.051 4.051 22 H 0.082 0.918 23 C 0.014 3.986 24 O -0.358 6.358 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.226 0.774 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.609 -17.769 -2.233 19.089 hybrid contribution -0.544 0.758 0.658 1.142 sum -7.153 -17.011 -1.575 18.521 Atomic orbital electron populations 1.21608 0.81721 1.02426 1.00214 1.48165 1.05997 1.07801 1.72132 1.19258 0.92483 0.78003 0.97470 1.21439 1.36381 1.06154 0.92333 0.92508 1.24934 0.95370 0.96399 0.97421 1.69934 1.38482 1.14399 1.30715 0.86495 0.78804 0.77451 0.84640 1.20513 1.21186 1.19973 1.20047 0.88245 0.84501 0.78006 1.90662 1.13571 1.86778 1.48595 1.22283 0.94559 0.91701 1.02106 1.65099 1.26451 1.00525 1.27342 1.23914 1.00541 0.97764 0.90117 1.22549 0.99262 0.91212 0.82959 0.91147 1.86490 1.71593 1.60949 1.18491 1.22236 0.97803 0.97094 0.97352 1.22787 0.96680 0.90718 0.94873 0.91792 1.21977 0.85809 0.98873 0.91967 1.86594 1.29160 1.95867 1.24149 0.93921 0.92803 0.90725 0.95105 0.93922 0.92760 0.88624 0.92505 0.93411 0.88419 0.77409 0.88772 0.90527 0.93550 0.93513 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 10.24 59.85 0.61 1.96 16 2 N -0.61 -13.12 2.86 -182.96 -0.52 -13.65 16 3 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 4 C -0.52 -15.15 9.39 -34.44 -0.32 -15.47 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 8 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.51 10.85 7.52 -10.99 -0.08 10.76 16 13 O -0.52 -13.51 14.80 5.55 0.08 -13.42 16 14 C 0.03 0.40 3.82 -4.98 -0.02 0.38 16 15 N -0.47 -7.39 4.63 -223.56 -1.03 -8.42 16 16 C 0.00 0.07 5.66 -2.18 -0.01 0.06 16 17 C 0.10 1.26 4.42 -25.35 -0.11 1.15 16 18 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 19 O -0.57 -6.56 13.26 -35.23 -0.47 -7.03 16 20 C -0.11 -1.28 6.25 -25.35 -0.16 -1.44 16 21 C 0.06 0.71 2.69 -66.07 -0.18 0.53 16 22 H 0.06 0.69 8.00 -51.93 -0.42 0.27 16 23 C 0.09 0.99 6.91 37.16 0.26 1.25 16 24 O -0.55 -6.79 12.33 -35.23 -0.43 -7.22 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 27 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.10 1.34 6.36 -51.93 -0.33 1.01 16 32 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 33 H 0.05 0.67 7.69 -51.93 -0.40 0.27 16 34 H 0.10 1.68 7.23 -51.92 -0.38 1.31 16 35 H 0.38 2.91 9.12 45.56 0.42 3.32 16 36 H 0.09 1.17 6.86 -51.93 -0.36 0.81 16 37 H 0.08 0.84 7.98 -51.93 -0.41 0.43 16 38 H 0.05 0.50 7.19 -51.93 -0.37 0.13 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.37 2.90 9.12 45.56 0.42 3.31 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -36.62 327.38 -6.47 -43.09 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.61 Total: 3.39 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -0.14 Total: 7.40 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.82 Total: -48.31 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.82 Total: -27.67 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.62 -6.47 -43.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698161549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.535 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds