Wall clock time and date at job start Mon Mar 30 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99658 * 2 1 4 4 C 1.50701 * 109.46992 * 90.00121 * 3 2 1 5 5 H 1.07998 * 120.00129 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99861 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 C 1.34775 * 120.00005 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99996 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00318 * 0.02562 * 12 2 1 15 15 N 1.46895 * 109.47428 * 180.02562 * 14 12 2 16 16 C 1.48565 * 110.99602 * 285.41319 * 15 14 12 17 17 C 1.54385 * 104.59427 * 200.95662 * 16 15 14 18 18 H 1.08992 * 110.40984 * 264.91649 * 17 16 15 19 19 O 1.42897 * 110.31945 * 142.75119 * 17 16 15 20 20 C 1.54259 * 105.05917 * 23.85590 * 17 16 15 21 21 C 1.48565 * 111.00298 * 169.99799 * 15 14 12 22 22 H 1.08997 * 110.40665 * 40.25819 * 21 15 14 23 23 C 1.52997 * 110.41009 * 277.81622 * 21 15 14 24 24 O 1.42894 * 109.47223 * 294.99994 * 23 21 15 25 25 H 1.08996 * 109.47461 * 90.00011 * 1 2 3 26 26 H 1.08998 * 109.46888 * 209.99779 * 1 2 3 27 27 H 1.08994 * 109.47490 * 329.99842 * 1 2 3 28 28 H 1.09002 * 109.47391 * 330.00112 * 3 2 1 29 29 H 1.09001 * 109.46813 * 210.00168 * 3 2 1 30 30 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47054 * 299.99977 * 14 12 2 32 32 H 1.09003 * 109.47164 * 59.99309 * 14 12 2 33 33 H 1.08993 * 110.41249 * 319.74048 * 16 15 14 34 34 H 1.09008 * 110.40806 * 82.18383 * 16 15 14 35 35 H 0.96693 * 114.00367 * 64.37035 * 19 17 16 36 36 H 1.08997 * 110.32341 * 241.10294 * 20 17 16 37 37 H 1.08996 * 110.32108 * 118.89213 * 20 17 16 38 38 H 1.09005 * 109.47088 * 54.99850 * 23 21 15 39 39 H 1.08992 * 109.47043 * 174.99551 * 23 21 15 40 40 H 0.96706 * 114.00110 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0958 2.2417 6 6 3.1268 2.8775 1.6728 7 7 3.5540 3.6176 0.6732 8 14 3.4387 3.4163 3.4339 9 1 4.7337 2.8588 3.9002 10 1 3.4869 4.8993 3.4968 11 1 2.3436 2.9194 4.3050 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3855 -2.4723 -0.0017 15 7 2.3401 -3.5888 -0.0014 16 6 2.9672 -3.7533 -1.3382 17 6 3.4851 -5.2076 -1.3486 18 1 4.5345 -5.2395 -1.0561 19 8 3.3139 -5.7860 -2.6440 20 6 2.6170 -5.9496 -0.3115 21 6 1.6477 -4.8812 0.2383 22 1 0.7018 -4.9117 -0.3024 23 6 1.4149 -5.0921 1.7357 24 8 2.6735 -5.2206 2.4000 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6083 2.0284 -0.5138 29 1 3.1498 1.1384 -0.5139 30 1 4.0308 4.4436 0.8505 31 1 0.7585 -2.5307 0.8881 32 1 0.7591 -2.5294 -0.8919 33 1 2.2278 -3.6073 -2.1255 34 1 3.7949 -3.0542 -1.4583 35 1 3.8361 -5.3598 -3.3373 36 1 3.2403 -6.3442 0.4909 37 1 2.0604 -6.7550 -0.7906 38 1 0.8746 -4.2376 2.1432 39 1 0.8293 -5.9985 1.8882 40 1 2.6022 -5.3574 3.3547 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698161549.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:31 Heat of formation + Delta-G solvation = -148.806317 kcal Electronic energy + Delta-G solvation = -21938.682930 eV Core-core repulsion = 18559.644562 eV Total energy + Delta-G solvation = -3379.038368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11672 -39.87436 -37.60931 -36.70396 -36.29901 -34.73520 -32.62639 -30.65280 -29.98722 -27.77214 -27.03091 -25.79952 -24.38567 -22.20589 -21.10370 -20.02176 -18.76618 -18.67928 -18.09305 -17.83843 -17.17555 -16.70740 -16.60261 -16.10408 -15.68820 -15.28168 -15.04600 -14.59792 -14.32230 -14.17043 -14.09551 -13.77263 -13.70026 -13.45136 -13.19346 -13.04509 -12.82634 -12.62153 -12.54664 -12.30782 -12.19333 -11.85426 -11.68605 -11.64842 -10.98091 -10.74716 -10.65505 -10.55905 -9.46712 -9.34929 -8.22726 -6.37622 1.35684 1.39634 1.48805 1.87046 2.22900 2.40205 2.87789 3.06729 3.37936 3.40564 3.55136 3.75068 3.93599 4.03807 4.20482 4.22756 4.24368 4.41309 4.46598 4.53965 4.61239 4.70761 4.77367 4.81958 4.93977 4.94889 4.96658 5.00529 5.21565 5.26578 5.55950 5.77415 5.83494 5.96089 6.06373 6.70501 6.78254 6.81844 7.06195 7.28909 7.54460 8.84323 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.004567 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.511074 B = 6129.169528 C = 6474.455712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.261 1.261 12 C 0.495 3.505 13 O -0.580 6.580 14 C 0.041 3.959 15 N -0.501 5.501 16 C 0.008 3.992 17 C 0.106 3.894 18 H 0.060 0.940 19 O -0.573 6.573 20 C -0.103 4.103 21 C 0.057 3.943 22 H 0.088 0.912 23 C 0.090 3.910 24 O -0.582 6.582 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.023 0.977 29 H -0.006 1.006 30 H 0.267 0.733 31 H 0.121 0.879 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 -19.410 -1.288 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.348 5.348 3 C 0.140 3.860 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.185 1.185 12 C 0.284 3.716 13 O -0.460 6.460 14 C -0.090 4.090 15 N -0.226 5.226 16 C -0.120 4.120 17 C 0.046 3.954 18 H 0.078 0.922 19 O -0.380 6.380 20 C -0.140 4.140 21 C -0.050 4.050 22 H 0.106 0.894 23 C 0.012 3.988 24 O -0.390 6.390 25 H 0.088 0.912 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.978 -19.416 -1.206 21.425 hybrid contribution 0.193 1.248 0.268 1.291 sum -8.785 -18.168 -0.938 20.202 Atomic orbital electron populations 1.21923 0.77914 1.04006 1.02497 1.48200 1.08383 1.06278 1.71894 1.18713 0.90968 0.80397 0.95969 1.21702 1.36796 1.06451 0.93040 0.92971 1.25872 0.94874 0.96421 1.02041 1.70052 1.38966 1.14863 1.33073 0.85409 0.78637 0.77551 0.79173 1.20807 1.19825 1.18461 1.21175 0.87996 0.86174 0.76301 1.90631 1.16456 1.87781 1.51091 1.22161 0.93964 0.88242 1.04597 1.65005 1.27719 1.02118 1.27769 1.23791 0.99639 0.98150 0.90434 1.22403 0.98888 0.90211 0.83905 0.92187 1.86454 1.72070 1.61024 1.18454 1.22210 0.97687 0.97330 0.96800 1.22971 0.97240 0.88450 0.96376 0.89399 1.22116 0.85502 1.00476 0.90746 1.86547 1.30522 1.96026 1.25858 0.91211 0.88876 0.91510 0.95873 0.98748 0.92409 0.86125 0.89402 0.92479 0.92243 0.75646 0.89477 0.89019 0.93483 0.90221 0.76106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.62 2.86 -851.14 -2.43 -29.05 16 3 C 0.26 14.47 5.16 85.63 0.44 14.92 16 4 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.39 5.46 84.66 0.46 0.86 16 7 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 8 Si 0.97 45.75 29.54 68.60 2.03 47.77 16 9 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 12 C 0.50 21.32 7.52 87.66 0.66 21.98 16 13 O -0.58 -31.55 14.80 -3.05 -0.05 -31.59 16 14 C 0.04 1.21 3.82 85.56 0.33 1.53 16 15 N -0.50 -15.07 4.63 -861.21 -3.99 -19.05 16 16 C 0.01 0.25 5.66 86.45 0.49 0.73 16 17 C 0.11 2.60 4.42 31.49 0.14 2.74 16 18 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 19 O -0.57 -12.27 13.26 -148.98 -1.98 -14.24 16 20 C -0.10 -2.23 6.25 31.49 0.20 -2.03 16 21 C 0.06 1.22 2.69 45.06 0.12 1.34 16 22 H 0.09 1.48 8.00 -2.39 -0.02 1.46 16 23 C 0.09 1.63 6.91 71.98 0.50 2.13 16 24 O -0.58 -13.24 12.33 -148.98 -1.84 -15.07 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 2.01 6.44 -2.39 -0.02 1.99 16 27 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 28 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 29 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.12 2.90 6.36 -2.38 -0.02 2.89 16 32 H 0.09 2.03 7.73 -2.39 -0.02 2.01 16 33 H 0.06 1.52 7.69 -2.39 -0.02 1.50 16 34 H 0.06 2.18 7.23 -2.38 -0.02 2.16 16 35 H 0.39 5.62 9.12 -74.06 -0.68 4.95 16 36 H 0.09 2.02 6.86 -2.39 -0.02 2.01 16 37 H 0.09 1.72 7.98 -2.39 -0.02 1.70 16 38 H 0.05 0.85 7.19 -2.38 -0.02 0.83 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.39 5.38 9.12 -74.05 -0.68 4.70 16 Total: -1.00 -83.02 327.38 -3.37 -86.39 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -0.29 Total: 15.78 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 4.88 Total: 16.10 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -6.13 Total: -105.13 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -3.86 Total: -60.91 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -83.02 -3.37 -86.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698161549.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.412 kcal (2) G-P(sol) polarization free energy of solvation -83.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds