Wall clock time and date at job start Mon Mar 30 2020 04:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48502 * 109.46988 * 270.00041 * 3 2 1 5 5 H 1.48505 * 109.47295 * 29.99671 * 3 2 1 6 6 H 1.48495 * 109.47451 * 149.99945 * 3 2 1 7 7 C 1.37881 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99894 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46832 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47181 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46534 * 55.00102 * 11 10 9 13 13 N 1.46900 * 109.47128 * 295.00456 * 11 10 9 14 14 C 1.50693 * 109.46833 * 174.99895 * 11 10 9 15 15 O 1.21284 * 119.99968 * 100.00722 * 14 11 10 16 16 N 1.34776 * 120.00699 * 279.99802 * 14 11 10 17 17 C 1.47427 * 125.64391 * 359.97438 * 16 14 11 18 18 C 1.54914 * 104.82986 * 204.15980 * 17 16 14 19 19 H 1.09001 * 111.00193 * 204.90992 * 18 17 16 20 20 O 1.42898 * 111.00430 * 81.06342 * 18 17 16 21 21 C 1.55153 * 101.58113 * 322.98765 * 18 17 16 22 22 C 1.47317 * 125.62115 * 179.83790 * 16 14 11 23 23 H 1.09000 * 109.84974 * 59.51309 * 22 16 14 24 24 C 1.53005 * 110.06301 * 298.25322 * 22 16 14 25 25 O 1.42902 * 109.46871 * 295.81238 * 24 22 16 26 26 H 0.97003 * 119.99622 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46948 * 60.00944 * 9 7 2 28 28 H 1.08994 * 109.47540 * 300.00136 * 9 7 2 29 29 H 1.09004 * 109.46961 * 60.00128 * 10 9 7 30 30 H 1.09003 * 109.47108 * 300.00553 * 10 9 7 31 31 H 1.00902 * 110.99698 * 176.04719 * 13 11 10 32 32 H 1.00898 * 110.99479 * 299.99873 * 13 11 10 33 33 H 1.08996 * 110.37285 * 85.31738 * 17 16 14 34 34 H 1.09000 * 110.45726 * 323.04248 * 17 16 14 35 35 H 0.96704 * 113.99966 * 67.80299 * 20 18 17 36 36 H 1.09002 * 110.72030 * 153.86743 * 21 18 17 37 37 H 1.09003 * 110.72184 * 276.96394 * 21 18 17 38 38 H 1.09004 * 109.47149 * 55.80969 * 24 22 16 39 39 H 1.08994 * 109.47012 * 175.81346 * 24 22 16 40 40 H 0.96703 * 113.99795 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5516 -2.6366 -0.0012 12 1 5.9155 -2.0469 0.8402 13 7 6.0402 -2.0517 -1.2570 14 6 6.0539 -4.0519 0.1228 15 8 6.4273 -4.6514 -0.8632 16 7 6.0884 -4.6516 1.3293 17 6 5.6675 -4.0422 2.6040 18 6 6.4465 -4.8220 3.6926 19 1 5.9257 -4.7826 4.6494 20 8 7.7821 -4.3299 3.8183 21 6 6.4362 -6.2609 3.1125 22 6 6.5505 -6.0257 1.5916 23 1 7.5884 -6.1335 1.2767 24 6 5.6696 -7.0276 0.8425 25 8 4.3360 -6.9633 1.3518 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6797 0.8896 28 1 3.8746 -0.6808 -0.8904 29 1 3.6578 -3.1506 -0.8897 30 1 3.6584 -3.1502 0.8903 31 1 7.0468 -1.9812 -1.2554 32 1 5.7160 -2.5809 -2.0525 33 1 4.5936 -4.1630 2.7460 34 1 5.9362 -2.9861 2.6284 35 1 7.8390 -3.4336 4.1769 36 1 7.2897 -6.8309 3.4797 37 1 5.5023 -6.7680 3.3553 38 1 5.6649 -6.7840 -0.2200 39 1 6.0640 -8.0340 0.9828 40 1 3.7210 -7.5735 0.9222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698179626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:17 Heat of formation + Delta-G solvation = -136.684636 kcal Electronic energy + Delta-G solvation = -22207.178143 eV Core-core repulsion = 18828.665410 eV Total energy + Delta-G solvation = -3378.512733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48344 -38.34049 -36.83191 -35.30439 -35.11710 -32.75008 -31.35562 -30.45870 -29.76979 -26.76027 -25.56848 -23.88427 -22.17506 -20.94107 -20.11917 -18.96406 -18.00917 -17.58405 -16.93733 -16.65110 -15.69237 -15.63202 -15.43851 -14.66233 -14.29546 -14.15344 -14.08890 -13.79137 -13.59125 -13.11022 -12.82044 -12.55658 -12.48418 -12.17423 -11.77701 -11.58505 -11.44436 -11.04908 -10.92127 -10.83724 -10.54723 -10.21270 -10.04318 -9.93743 -9.68984 -9.53873 -9.09624 -8.59601 -8.49412 -8.36171 -5.98264 -3.95528 2.75188 2.99867 3.37898 3.44318 3.49707 3.86154 4.06874 4.25657 4.47793 4.52157 4.71556 4.81220 4.92130 5.03138 5.14245 5.29663 5.32792 5.36385 5.38944 5.53929 5.60066 5.65132 5.73167 5.75839 5.95435 6.27681 6.36689 6.53521 6.90755 7.28806 7.35981 7.40371 7.51720 7.56243 7.60536 7.68686 7.87861 8.26574 8.60005 9.06888 9.64889 11.15292 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.004921 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.020924 B = 5688.699279 C = 5740.502401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.084 4.084 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.811 5.811 14 C 0.502 3.498 15 O -0.557 6.557 16 N -0.598 5.598 17 C 0.072 3.928 18 C 0.089 3.911 19 H 0.082 0.918 20 O -0.559 6.559 21 C -0.117 4.117 22 C 0.141 3.859 23 H 0.086 0.914 24 C 0.062 3.938 25 O -0.565 6.565 26 H 0.262 0.738 27 H 0.011 0.989 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.335 0.665 32 H 0.349 0.651 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.381 0.619 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.790 -12.321 7.919 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.123 4.123 11 C -0.037 4.037 12 H 0.112 0.888 13 N -0.339 5.339 14 C 0.291 3.709 15 O -0.435 6.435 16 N -0.332 5.332 17 C -0.052 4.052 18 C 0.029 3.971 19 H 0.100 0.900 20 O -0.365 6.365 21 C -0.155 4.155 22 C 0.038 3.962 23 H 0.103 0.897 24 C -0.017 4.017 25 O -0.370 6.370 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.163 0.837 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.229 0.771 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 14.821 -11.943 7.639 20.509 hybrid contribution 0.423 0.026 -0.274 0.505 sum 15.244 -11.916 7.365 20.703 Atomic orbital electron populations 1.69927 1.06345 1.26772 1.51568 1.25011 0.94686 0.99173 0.94623 0.86739 0.80221 0.83456 0.78594 1.20287 1.21720 1.18953 1.21181 0.89732 0.94325 1.50522 0.91308 1.19478 0.96354 0.91206 0.97035 1.21431 0.87916 1.01363 1.01561 1.21825 0.99397 0.87691 0.94755 0.88766 1.59067 1.15339 1.56030 1.03461 1.22290 0.76895 0.90639 0.81109 1.90625 1.49686 1.66843 1.36357 1.48502 1.63988 1.13572 1.07168 1.23113 1.00384 0.98146 0.83551 1.22954 0.83134 0.94090 0.96918 0.89987 1.86497 1.26436 1.35909 1.87707 1.22695 1.04163 0.95541 0.93116 1.21655 0.97152 0.82278 0.95160 0.89658 1.22515 0.83317 0.97425 0.98427 1.86460 1.19831 1.66117 1.64590 0.92869 0.97040 0.95314 0.92402 0.92120 0.85374 0.83662 0.89410 0.89987 0.77129 0.89622 0.87937 0.92068 0.93206 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.94 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 10 C -0.08 -1.70 4.77 -26.73 -0.13 -1.82 16 11 C 0.08 1.32 2.57 -68.87 -0.18 1.15 16 12 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 13 N -0.81 -13.33 8.44 -5.65 -0.05 -13.37 16 14 C 0.50 8.28 6.88 -10.99 -0.08 8.21 16 15 O -0.56 -10.40 15.25 5.55 0.08 -10.32 16 16 N -0.60 -8.30 3.03 -162.79 -0.49 -8.80 16 17 C 0.07 0.83 5.97 -2.53 -0.02 0.81 16 18 C 0.09 0.82 4.43 -24.58 -0.11 0.71 16 19 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 20 O -0.56 -5.30 13.47 -35.23 -0.47 -5.78 16 21 C -0.12 -1.13 6.09 -24.90 -0.15 -1.28 16 22 C 0.14 1.72 3.27 -66.79 -0.22 1.50 16 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 24 C 0.06 0.72 6.70 37.16 0.25 0.97 16 25 O -0.56 -6.67 12.44 -35.23 -0.44 -7.11 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 28 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.20 7.41 -51.93 -0.38 0.81 16 31 H 0.33 4.78 9.06 -39.29 -0.36 4.43 16 32 H 0.35 5.86 8.58 -39.29 -0.34 5.52 16 33 H 0.09 1.09 7.87 -51.93 -0.41 0.68 16 34 H 0.08 0.88 6.93 -51.93 -0.36 0.52 16 35 H 0.38 2.14 9.12 45.56 0.42 2.55 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.97 6.98 -51.93 -0.36 0.60 16 38 H 0.06 0.87 6.77 -51.93 -0.35 0.52 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.38 3.05 9.12 45.56 0.42 3.47 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -35.66 324.67 -6.07 -41.73 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.53 Total: 12.16 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.16 Total: -3.38 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.23 Total: -49.66 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.83 Total: -23.20 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.66 -6.07 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698179626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.950 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds