Wall clock time and date at job start Mon Mar 30 2020 04:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00223 * 2 1 4 4 H 1.48502 * 109.46988 * 270.00041 * 3 2 1 5 5 H 1.48505 * 109.47295 * 29.99671 * 3 2 1 6 6 H 1.48495 * 109.47451 * 149.99945 * 3 2 1 7 7 C 1.37881 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99670 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99894 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46832 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47181 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46534 * 55.00102 * 11 10 9 13 13 N 1.46900 * 109.47128 * 295.00456 * 11 10 9 14 14 C 1.50693 * 109.46833 * 174.99895 * 11 10 9 15 15 O 1.21284 * 119.99968 * 100.00722 * 14 11 10 16 16 N 1.34776 * 120.00699 * 279.99802 * 14 11 10 17 17 C 1.47427 * 125.64391 * 359.97438 * 16 14 11 18 18 C 1.54914 * 104.82986 * 204.15980 * 17 16 14 19 19 H 1.09001 * 111.00193 * 204.90992 * 18 17 16 20 20 O 1.42898 * 111.00430 * 81.06342 * 18 17 16 21 21 C 1.55153 * 101.58113 * 322.98765 * 18 17 16 22 22 C 1.47317 * 125.62115 * 179.83790 * 16 14 11 23 23 H 1.09000 * 109.84974 * 59.51309 * 22 16 14 24 24 C 1.53005 * 110.06301 * 298.25322 * 22 16 14 25 25 O 1.42902 * 109.46871 * 295.81238 * 24 22 16 26 26 H 0.97003 * 119.99622 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46948 * 60.00944 * 9 7 2 28 28 H 1.08994 * 109.47540 * 300.00136 * 9 7 2 29 29 H 1.09004 * 109.46961 * 60.00128 * 10 9 7 30 30 H 1.09003 * 109.47108 * 300.00553 * 10 9 7 31 31 H 1.00902 * 110.99698 * 176.04719 * 13 11 10 32 32 H 1.00898 * 110.99479 * 299.99873 * 13 11 10 33 33 H 1.08996 * 110.37285 * 85.31738 * 17 16 14 34 34 H 1.09000 * 110.45726 * 323.04248 * 17 16 14 35 35 H 0.96704 * 113.99966 * 67.80299 * 20 18 17 36 36 H 1.09002 * 110.72030 * 153.86743 * 21 18 17 37 37 H 1.09003 * 110.72184 * 276.96394 * 21 18 17 38 38 H 1.09004 * 109.47149 * 55.80969 * 24 22 16 39 39 H 1.08994 * 109.47012 * 175.81346 * 24 22 16 40 40 H 0.96703 * 113.99795 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5516 -2.6366 -0.0012 12 1 5.9155 -2.0469 0.8402 13 7 6.0402 -2.0517 -1.2570 14 6 6.0539 -4.0519 0.1228 15 8 6.4273 -4.6514 -0.8632 16 7 6.0884 -4.6516 1.3293 17 6 5.6675 -4.0422 2.6040 18 6 6.4465 -4.8220 3.6926 19 1 5.9257 -4.7826 4.6494 20 8 7.7821 -4.3299 3.8183 21 6 6.4362 -6.2609 3.1125 22 6 6.5505 -6.0257 1.5916 23 1 7.5884 -6.1335 1.2767 24 6 5.6696 -7.0276 0.8425 25 8 4.3360 -6.9633 1.3518 26 1 -0.4850 0.8401 -0.0004 27 1 3.8752 -0.6797 0.8896 28 1 3.8746 -0.6808 -0.8904 29 1 3.6578 -3.1506 -0.8897 30 1 3.6584 -3.1502 0.8903 31 1 7.0468 -1.9812 -1.2554 32 1 5.7160 -2.5809 -2.0525 33 1 4.5936 -4.1630 2.7460 34 1 5.9362 -2.9861 2.6284 35 1 7.8390 -3.4336 4.1769 36 1 7.2897 -6.8309 3.4797 37 1 5.5023 -6.7680 3.3553 38 1 5.6649 -6.7840 -0.2200 39 1 6.0640 -8.0340 0.9828 40 1 3.7210 -7.5735 0.9222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698179626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:16 Heat of formation + Delta-G solvation = -169.575968 kcal Electronic energy + Delta-G solvation = -22208.604418 eV Core-core repulsion = 18828.665410 eV Total energy + Delta-G solvation = -3379.939008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57378 -39.40833 -37.69333 -36.84156 -36.02205 -34.80260 -32.35649 -32.29011 -30.64209 -28.42260 -26.53625 -25.43296 -23.30415 -22.13198 -21.63422 -20.11695 -18.94734 -18.90202 -18.41142 -17.95666 -16.93995 -16.80996 -16.59732 -16.15541 -15.64446 -15.34675 -15.07787 -14.97360 -14.76136 -14.62397 -14.19239 -13.98826 -13.75183 -13.54773 -13.17629 -12.81999 -12.65518 -12.39709 -12.24899 -11.93355 -11.84409 -11.76764 -11.62899 -11.37674 -11.24270 -11.00199 -10.87555 -10.71266 -9.70544 -9.68011 -8.25061 -6.28509 1.41157 1.42655 1.47228 1.55321 1.92398 2.41254 3.11386 3.13499 3.29233 3.39313 3.51013 3.64795 3.82683 3.88719 4.00987 4.13928 4.22348 4.32982 4.45304 4.51734 4.65522 4.67500 4.76148 4.81955 4.82401 4.90718 5.10091 5.18675 5.31633 5.47344 5.63129 5.71274 6.01545 6.32084 6.41406 6.45966 6.78067 6.79359 6.86622 7.03539 7.35892 8.91917 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.004921 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.020924 B = 5688.699279 C = 5740.502401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.531 4.531 8 H 0.026 0.974 9 C 0.005 3.995 10 C -0.072 4.072 11 C 0.089 3.911 12 H 0.113 0.887 13 N -0.816 5.816 14 C 0.498 3.502 15 O -0.585 6.585 16 N -0.596 5.596 17 C 0.061 3.939 18 C 0.099 3.901 19 H 0.110 0.890 20 O -0.573 6.573 21 C -0.110 4.110 22 C 0.131 3.869 23 H 0.079 0.921 24 C 0.066 3.934 25 O -0.579 6.579 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.348 0.652 32 H 0.345 0.655 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.858 -11.779 9.527 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.192 4.192 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.569 4.569 8 H 0.045 0.955 9 C -0.032 4.032 10 C -0.111 4.111 11 C -0.027 4.027 12 H 0.131 0.869 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.466 6.466 16 N -0.328 5.328 17 C -0.062 4.062 18 C 0.039 3.961 19 H 0.127 0.873 20 O -0.381 6.381 21 C -0.148 4.148 22 C 0.027 3.973 23 H 0.097 0.903 24 C -0.012 4.012 25 O -0.386 6.386 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.248 0.752 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 16.905 -11.417 9.287 22.414 hybrid contribution -0.293 -0.239 -0.765 0.854 sum 16.612 -11.656 8.522 22.010 Atomic orbital electron populations 1.70082 1.08379 1.28066 1.52997 1.25994 0.95552 1.03510 0.94119 0.85611 0.79603 0.78062 0.79032 1.19782 1.21106 1.16462 1.21521 0.92373 0.92856 1.50171 0.95521 1.19348 0.93000 0.93622 0.97228 1.21174 0.90617 0.98728 1.00541 1.21608 0.96725 0.88660 0.95666 0.86894 1.59055 1.16485 1.55836 1.03139 1.22107 0.77155 0.90466 0.81662 1.90610 1.51218 1.67293 1.37508 1.48571 1.62653 1.14453 1.07162 1.23356 1.00333 0.99161 0.83304 1.22937 0.83053 0.93012 0.97055 0.87292 1.86466 1.26347 1.37402 1.87925 1.22687 1.04978 0.96219 0.90913 1.21876 0.96800 0.81361 0.97230 0.90288 1.22444 0.83502 0.98845 0.96446 1.86414 1.20273 1.67060 1.64886 0.92608 0.95773 0.95506 0.94597 0.92149 0.83848 0.84101 0.90353 0.89026 0.75181 0.88185 0.87584 0.95194 0.90300 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 2 C 0.00 0.27 5.47 84.66 0.46 0.73 16 3 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 7 C -0.53 -31.08 9.66 25.60 0.25 -30.84 16 8 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 9 C 0.01 0.26 3.93 29.85 0.12 0.38 16 10 C -0.07 -2.90 4.77 30.60 0.15 -2.75 16 11 C 0.09 2.88 2.57 44.17 0.11 2.99 16 12 H 0.11 3.23 6.91 -2.39 -0.02 3.21 16 13 N -0.82 -25.83 8.44 -171.80 -1.45 -27.28 16 14 C 0.50 16.14 6.88 87.65 0.60 16.74 16 15 O -0.59 -21.96 15.25 -3.04 -0.05 -22.01 16 16 N -0.60 -15.86 3.03 -787.35 -2.38 -18.24 16 17 C 0.06 1.29 5.97 86.86 0.52 1.81 16 18 C 0.10 1.53 4.43 31.99 0.14 1.67 16 19 H 0.11 1.16 8.14 -2.39 -0.02 1.15 16 20 O -0.57 -9.04 13.47 -148.98 -2.01 -11.05 16 21 C -0.11 -1.84 6.09 31.78 0.19 -1.65 16 22 C 0.13 3.00 3.27 45.29 0.15 3.15 16 23 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 24 C 0.07 1.50 6.70 71.98 0.48 1.98 16 25 O -0.58 -13.21 12.44 -148.98 -1.85 -15.07 16 26 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 27 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 28 H 0.03 1.28 7.18 -2.39 -0.02 1.26 16 29 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 2.39 7.41 -2.39 -0.02 2.38 16 31 H 0.35 9.38 9.06 -89.69 -0.81 8.57 16 32 H 0.35 11.49 8.58 -89.70 -0.77 10.72 16 33 H 0.08 1.83 7.87 -2.39 -0.02 1.81 16 34 H 0.09 1.74 6.93 -2.39 -0.02 1.72 16 35 H 0.40 3.14 9.12 -74.05 -0.68 2.47 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 1.72 6.98 -2.39 -0.02 1.70 16 38 H 0.03 0.86 6.77 -2.39 -0.02 0.85 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.39 6.11 9.12 -74.06 -0.68 5.43 16 Total: -1.00 -77.61 324.67 -4.28 -81.89 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -1.90 Total: 31.09 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 3.17 Total: -5.78 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -3.53 Total: -105.86 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -3.91 Total: -48.13 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -77.61 -4.28 -81.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698179626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.683 kcal (2) G-P(sol) polarization free energy of solvation -77.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds