Wall clock time and date at job start Mon Mar 30 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46879 * 299.99822 * 3 2 1 6 6 H 1.48505 * 109.47228 * 59.99767 * 3 2 1 7 7 C 1.37876 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46978 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47305 * 54.99506 * 11 10 9 13 13 N 1.46901 * 109.47089 * 294.99360 * 11 10 9 14 14 C 1.50702 * 109.47133 * 174.99875 * 11 10 9 15 15 O 1.21280 * 120.00352 * 99.99759 * 14 11 10 16 16 N 1.34779 * 119.99587 * 279.99661 * 14 11 10 17 17 C 1.47421 * 125.65434 * 359.97438 * 16 14 11 18 18 C 1.54905 * 104.83503 * 155.88887 * 17 16 14 19 19 H 1.09003 * 111.00064 * 155.08308 * 18 17 16 20 20 O 1.42903 * 111.00685 * 278.93510 * 18 17 16 21 21 C 1.55150 * 101.58283 * 37.01350 * 18 17 16 22 22 C 1.47027 * 125.64512 * 179.97438 * 16 14 11 23 23 H 1.08995 * 110.01139 * 300.52886 * 22 16 14 24 24 C 1.52999 * 109.88051 * 61.62256 * 22 16 14 25 25 O 1.42903 * 109.47256 * 64.26424 * 24 22 16 26 26 H 0.97004 * 119.99957 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47377 * 59.99675 * 9 7 2 28 28 H 1.09002 * 109.46992 * 299.99678 * 9 7 2 29 29 H 1.09002 * 109.47520 * 59.99552 * 10 9 7 30 30 H 1.09002 * 109.46796 * 299.99644 * 10 9 7 31 31 H 1.00901 * 110.99835 * 300.00388 * 13 11 10 32 32 H 1.00900 * 110.99716 * 63.95354 * 13 11 10 33 33 H 1.09005 * 110.36301 * 37.05081 * 17 16 14 34 34 H 1.08996 * 110.45780 * 274.78101 * 17 16 14 35 35 H 0.96703 * 113.99901 * 292.19929 * 20 18 17 36 36 H 1.08998 * 110.72540 * 206.13323 * 21 18 17 37 37 H 1.08997 * 110.72700 * 82.85441 * 21 18 17 38 38 H 1.08997 * 109.47286 * 304.25984 * 24 22 16 39 39 H 1.09008 * 109.47201 * 184.25765 * 24 22 16 40 40 H 0.96700 * 114.00311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 1 0.7889 -5.0071 -0.8413 13 7 0.7272 -5.1183 1.2557 14 6 2.4549 -6.1299 -0.1214 15 8 2.7857 -6.7533 0.8649 16 7 2.9590 -6.4591 -1.3272 17 6 2.6440 -5.7894 -2.6022 18 6 3.8629 -6.0781 -3.5136 19 1 3.5840 -6.0292 -4.5662 20 8 4.9391 -5.1821 -3.2288 21 6 4.2237 -7.5295 -3.1008 22 6 3.9142 -7.5457 -1.5889 23 1 4.8301 -7.3820 -1.0211 24 6 3.2938 -8.8889 -1.1993 25 8 2.1661 -9.1534 -2.0363 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 1.3462 -5.1025 2.0523 32 1 0.0224 -4.4002 1.3311 33 1 2.5306 -4.7162 -2.4491 34 1 1.7368 -6.2076 -3.0382 35 1 4.7598 -4.2629 -3.4699 36 1 5.2799 -7.7304 -3.2801 37 1 3.5981 -8.2480 -3.6304 38 1 2.9730 -8.8527 -0.1582 39 1 4.0327 -9.6805 -1.3245 40 1 1.7220 -9.9908 -1.8449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698179640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:24 Heat of formation + Delta-G solvation = -140.431774 kcal Electronic energy + Delta-G solvation = -22154.496797 eV Core-core repulsion = 18775.821576 eV Total energy + Delta-G solvation = -3378.675221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34417 -38.12715 -36.78706 -35.43278 -34.96815 -32.85527 -31.24899 -29.87424 -29.67223 -26.53199 -25.46932 -24.04899 -22.22428 -21.02447 -20.16493 -18.86726 -17.92222 -17.56829 -16.95572 -16.27277 -15.69807 -15.33693 -14.74262 -14.47826 -14.36302 -14.14030 -13.97734 -13.71165 -13.64826 -13.21434 -12.86937 -12.48443 -12.24781 -12.05340 -11.69510 -11.54149 -11.34369 -11.04712 -10.93409 -10.88796 -10.67102 -10.34274 -10.07654 -9.96431 -9.79744 -9.25049 -9.13099 -8.47123 -8.44578 -8.14824 -6.09401 -4.12504 2.98372 3.08571 3.25348 3.33624 3.37666 3.99580 4.12348 4.36223 4.39125 4.57486 4.81768 5.00049 5.11152 5.18256 5.22791 5.27041 5.37051 5.44427 5.60046 5.61817 5.67753 5.73421 5.77141 5.83782 6.03692 6.30668 6.44095 6.56717 6.87973 7.46639 7.50463 7.52768 7.55519 7.61625 7.75289 7.87983 7.93244 8.30676 8.50120 8.93842 9.52608 11.01537 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.004833 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.460373 B = 5791.832309 C = 6550.080448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.136 4.136 11 C 0.079 3.921 12 H 0.094 0.906 13 N -0.831 5.831 14 C 0.545 3.455 15 O -0.542 6.542 16 N -0.603 5.603 17 C 0.068 3.932 18 C 0.090 3.910 19 H 0.079 0.921 20 O -0.558 6.558 21 C -0.117 4.117 22 C 0.144 3.856 23 H 0.087 0.913 24 C 0.061 3.939 25 O -0.567 6.567 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.345 0.655 32 H 0.354 0.646 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.385 0.615 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.705 -15.571 -8.123 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.176 4.176 11 C -0.036 4.036 12 H 0.112 0.888 13 N -0.363 5.363 14 C 0.335 3.665 15 O -0.419 6.419 16 N -0.338 5.338 17 C -0.056 4.056 18 C 0.031 3.969 19 H 0.097 0.903 20 O -0.365 6.365 21 C -0.155 4.155 22 C 0.040 3.960 23 H 0.104 0.896 24 C -0.017 4.017 25 O -0.372 6.372 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.233 0.767 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.911 -16.446 -7.810 19.142 hybrid contribution 0.358 1.937 0.227 1.982 sum 6.269 -14.510 -7.582 17.530 Atomic orbital electron populations 1.69963 1.06028 1.26662 1.50564 1.25009 0.94846 0.99285 0.95132 0.86540 0.80138 0.83708 0.77663 1.19731 1.20953 1.20944 1.21217 0.93051 0.90841 1.50948 0.92659 1.19104 0.93692 0.91131 0.97318 1.22385 0.99829 0.93922 1.01477 1.21427 0.94512 0.92251 0.95380 0.88846 1.58738 1.18453 1.55858 1.03210 1.20541 0.80787 0.84332 0.80887 1.90601 1.60817 1.54097 1.36374 1.48243 1.45458 1.33146 1.06911 1.23133 0.98388 0.99248 0.84810 1.22890 0.86454 0.90456 0.97140 0.90293 1.86486 1.40404 1.21925 1.87638 1.22693 1.03024 0.95247 0.94516 1.21563 0.92129 0.85860 0.96429 0.89553 1.22570 0.88176 0.95994 0.94989 1.86445 1.45698 1.44280 1.60756 0.92940 0.96406 0.96427 0.92724 0.92523 0.84190 0.83109 0.89279 0.90317 0.76714 0.89595 0.88166 0.91841 0.93220 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 10 C -0.14 -2.76 4.64 -26.73 -0.12 -2.88 16 11 C 0.08 1.44 2.49 -68.86 -0.17 1.27 16 12 H 0.09 1.64 7.68 -51.93 -0.40 1.25 16 13 N -0.83 -15.05 8.94 -5.65 -0.05 -15.10 16 14 C 0.55 9.86 6.88 -10.98 -0.08 9.79 16 15 O -0.54 -11.12 15.22 5.56 0.08 -11.04 16 16 N -0.60 -9.03 3.01 -163.02 -0.49 -9.52 16 17 C 0.07 0.85 6.12 -2.53 -0.02 0.83 16 18 C 0.09 0.94 4.43 -24.59 -0.11 0.83 16 19 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 20 O -0.56 -6.52 13.47 -35.23 -0.47 -7.00 16 21 C -0.12 -1.20 6.10 -24.90 -0.15 -1.35 16 22 C 0.14 1.86 3.26 -66.95 -0.22 1.65 16 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 24 C 0.06 0.72 6.68 37.16 0.25 0.97 16 25 O -0.57 -6.24 12.44 -35.23 -0.44 -6.68 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.10 6.59 -51.93 -0.34 0.76 16 31 H 0.34 6.31 8.58 -39.29 -0.34 5.97 16 32 H 0.35 6.35 7.55 -39.29 -0.30 6.05 16 33 H 0.09 1.18 6.05 -51.93 -0.31 0.86 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.38 3.31 9.12 45.56 0.42 3.72 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.94 6.98 -51.93 -0.36 0.58 16 38 H 0.06 0.91 6.73 -51.93 -0.35 0.56 16 39 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.38 2.60 9.12 45.56 0.42 3.01 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -33.69 325.44 -6.34 -40.03 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -4.43 Total: 14.95 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.16 Total: -1.48 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.19 Total: -49.84 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.83 Total: -24.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.69 -6.34 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698179640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.401 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds