Wall clock time and date at job start Mon Mar 30 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46879 * 299.99822 * 3 2 1 6 6 H 1.48505 * 109.47228 * 59.99767 * 3 2 1 7 7 C 1.37876 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08012 * 119.99922 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47127 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46978 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47305 * 54.99506 * 11 10 9 13 13 N 1.46901 * 109.47089 * 294.99360 * 11 10 9 14 14 C 1.50702 * 109.47133 * 174.99875 * 11 10 9 15 15 O 1.21280 * 120.00352 * 99.99759 * 14 11 10 16 16 N 1.34779 * 119.99587 * 279.99661 * 14 11 10 17 17 C 1.47421 * 125.65434 * 359.97438 * 16 14 11 18 18 C 1.54905 * 104.83503 * 155.88887 * 17 16 14 19 19 H 1.09003 * 111.00064 * 155.08308 * 18 17 16 20 20 O 1.42903 * 111.00685 * 278.93510 * 18 17 16 21 21 C 1.55150 * 101.58283 * 37.01350 * 18 17 16 22 22 C 1.47027 * 125.64512 * 179.97438 * 16 14 11 23 23 H 1.08995 * 110.01139 * 300.52886 * 22 16 14 24 24 C 1.52999 * 109.88051 * 61.62256 * 22 16 14 25 25 O 1.42903 * 109.47256 * 64.26424 * 24 22 16 26 26 H 0.97004 * 119.99957 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47377 * 59.99675 * 9 7 2 28 28 H 1.09002 * 109.46992 * 299.99678 * 9 7 2 29 29 H 1.09002 * 109.47520 * 59.99552 * 10 9 7 30 30 H 1.09002 * 109.46796 * 299.99644 * 10 9 7 31 31 H 1.00901 * 110.99835 * 300.00388 * 13 11 10 32 32 H 1.00900 * 110.99716 * 63.95354 * 13 11 10 33 33 H 1.09005 * 110.36301 * 37.05081 * 17 16 14 34 34 H 1.08996 * 110.45780 * 274.78101 * 17 16 14 35 35 H 0.96703 * 113.99901 * 292.19929 * 20 18 17 36 36 H 1.08998 * 110.72540 * 206.13323 * 21 18 17 37 37 H 1.08997 * 110.72700 * 82.85441 * 21 18 17 38 38 H 1.08997 * 109.47286 * 304.25984 * 24 22 16 39 39 H 1.09008 * 109.47201 * 184.25765 * 24 22 16 40 40 H 0.96700 * 114.00311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 1 0.7889 -5.0071 -0.8413 13 7 0.7272 -5.1183 1.2557 14 6 2.4549 -6.1299 -0.1214 15 8 2.7857 -6.7533 0.8649 16 7 2.9590 -6.4591 -1.3272 17 6 2.6440 -5.7894 -2.6022 18 6 3.8629 -6.0781 -3.5136 19 1 3.5840 -6.0292 -4.5662 20 8 4.9391 -5.1821 -3.2288 21 6 4.2237 -7.5295 -3.1008 22 6 3.9142 -7.5457 -1.5889 23 1 4.8301 -7.3820 -1.0211 24 6 3.2938 -8.8889 -1.1993 25 8 2.1661 -9.1534 -2.0363 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8713 -3.6039 0.8922 30 1 2.8725 -3.6047 -0.8878 31 1 1.3462 -5.1025 2.0523 32 1 0.0224 -4.4002 1.3311 33 1 2.5306 -4.7162 -2.4491 34 1 1.7368 -6.2076 -3.0382 35 1 4.7598 -4.2629 -3.4699 36 1 5.2799 -7.7304 -3.2801 37 1 3.5981 -8.2480 -3.6304 38 1 2.9730 -8.8527 -0.1582 39 1 4.0327 -9.6805 -1.3245 40 1 1.7220 -9.9908 -1.8449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698179640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:24 Heat of formation + Delta-G solvation = -170.614657 kcal Electronic energy + Delta-G solvation = -22155.805625 eV Core-core repulsion = 18775.821576 eV Total energy + Delta-G solvation = -3379.984049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52352 -39.32508 -37.67671 -37.03035 -35.97917 -34.85674 -32.31778 -31.71723 -30.61704 -28.19803 -26.51585 -25.71467 -23.46227 -22.30598 -21.55104 -20.10729 -18.94960 -18.78557 -18.26552 -17.91111 -16.92335 -16.52000 -16.45061 -15.84861 -15.71666 -15.36469 -15.07179 -15.00672 -14.80191 -14.56042 -14.26574 -13.86878 -13.66273 -13.46817 -13.17528 -12.91122 -12.73051 -12.51598 -12.42111 -12.20778 -11.83316 -11.76781 -11.71855 -11.31701 -11.20273 -10.93391 -10.59225 -10.55460 -9.73906 -9.58898 -8.22020 -6.32582 1.38661 1.40578 1.52235 1.57861 1.89787 2.39761 3.11802 3.16349 3.32442 3.42371 3.60591 3.71550 3.85600 3.95733 4.05936 4.15535 4.20427 4.37266 4.49151 4.53402 4.58983 4.70450 4.78788 4.81578 4.85516 4.94250 5.04892 5.20217 5.37844 5.45420 5.62103 5.78987 6.02628 6.19904 6.43102 6.46658 6.82351 6.84564 6.85223 7.13848 7.36849 8.89080 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.004833 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.460373 B = 5791.832309 C = 6550.080448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.033 3.967 10 C -0.117 4.117 11 C 0.087 3.913 12 H 0.100 0.900 13 N -0.829 5.829 14 C 0.539 3.461 15 O -0.574 6.574 16 N -0.600 5.600 17 C 0.060 3.940 18 C 0.095 3.905 19 H 0.113 0.887 20 O -0.577 6.577 21 C -0.106 4.106 22 C 0.131 3.869 23 H 0.072 0.928 24 C 0.070 3.930 25 O -0.576 6.576 26 H 0.264 0.736 27 H 0.003 0.997 28 H 0.001 0.999 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.344 0.656 32 H 0.353 0.647 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.396 0.604 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.031 0.969 39 H 0.080 0.920 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.662 -15.942 -9.803 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.157 4.157 11 C -0.028 4.028 12 H 0.118 0.882 13 N -0.361 5.361 14 C 0.328 3.672 15 O -0.454 6.454 16 N -0.333 5.333 17 C -0.063 4.063 18 C 0.036 3.964 19 H 0.130 0.870 20 O -0.385 6.385 21 C -0.144 4.144 22 C 0.028 3.972 23 H 0.090 0.910 24 C -0.009 4.009 25 O -0.384 6.384 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.246 0.754 36 H 0.116 0.884 37 H 0.132 0.868 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 6.872 -16.834 -9.531 20.529 hybrid contribution 0.034 2.016 0.724 2.142 sum 6.906 -14.818 -8.807 18.569 Atomic orbital electron populations 1.70071 1.07518 1.27734 1.51354 1.25845 0.95685 1.02912 0.94652 0.85487 0.79021 0.79242 0.77830 1.18998 1.20097 1.20663 1.21602 0.93277 0.92296 1.50884 0.92774 1.18946 0.93877 0.91920 0.95681 1.22111 0.98751 0.93673 1.01141 1.21323 0.94490 0.91440 0.95562 0.88180 1.58747 1.18387 1.55663 1.03272 1.20400 0.80922 0.84216 0.81632 1.90581 1.61973 1.55133 1.37673 1.48302 1.44740 1.33477 1.06751 1.23381 1.00252 0.98519 0.84166 1.23019 0.85047 0.90179 0.98186 0.86976 1.86458 1.41050 1.23053 1.87986 1.22698 1.04062 0.95491 0.92131 1.21818 0.91191 0.85781 0.98452 0.91001 1.22396 0.89028 0.96267 0.93216 1.86386 1.45716 1.45872 1.60384 0.92699 0.97909 0.98078 0.94081 0.91702 0.84343 0.83205 0.90306 0.89149 0.75392 0.88377 0.86774 0.95023 0.90243 0.75657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.88 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -29.80 9.11 25.60 0.23 -29.56 16 8 H 0.05 2.92 7.74 -2.90 -0.02 2.90 16 9 C 0.03 1.63 4.74 29.85 0.14 1.77 16 10 C -0.12 -4.77 4.64 30.59 0.14 -4.63 16 11 C 0.09 3.18 2.49 44.17 0.11 3.29 16 12 H 0.10 3.51 7.68 -2.39 -0.02 3.49 16 13 N -0.83 -30.57 8.94 -171.80 -1.54 -32.10 16 14 C 0.54 19.58 6.88 87.66 0.60 20.18 16 15 O -0.57 -23.96 15.22 -3.03 -0.05 -24.01 16 16 N -0.60 -17.50 3.01 -788.05 -2.37 -19.88 16 17 C 0.06 1.39 6.12 86.85 0.53 1.92 16 18 C 0.10 1.71 4.43 31.98 0.14 1.85 16 19 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 20 O -0.58 -12.27 13.47 -148.98 -2.01 -14.27 16 21 C -0.11 -1.86 6.10 31.78 0.19 -1.67 16 22 C 0.13 3.21 3.26 45.34 0.15 3.36 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 C 0.07 1.53 6.68 71.98 0.48 2.01 16 25 O -0.58 -11.43 12.44 -148.98 -1.85 -13.28 16 26 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.52 6.59 -2.39 -0.02 2.50 16 31 H 0.34 12.88 8.58 -89.69 -0.77 12.11 16 32 H 0.35 12.98 7.55 -89.69 -0.68 12.30 16 33 H 0.08 2.00 6.05 -2.38 -0.01 1.98 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.40 6.10 9.12 -74.05 -0.68 5.42 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 1.73 6.98 -2.39 -0.02 1.71 16 38 H 0.03 0.90 6.73 -2.39 -0.02 0.89 16 39 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.39 4.60 9.12 -74.06 -0.68 3.92 16 Total: -1.00 -71.88 325.44 -4.02 -75.90 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: -1.70 Total: 36.93 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 3.19 Total: -0.59 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -3.62 Total: -105.86 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -3.91 Total: -51.57 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -71.88 -4.02 -75.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698179640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.715 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds