Wall clock time and date at job start Mon Mar 30 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00249 * 2 1 4 4 C 1.53002 * 109.47487 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47037 * 77.94092 * 4 3 2 6 6 C 1.46900 * 111.00074 * 299.97817 * 5 4 3 7 7 C 1.50701 * 109.46867 * 83.73528 * 6 5 4 8 8 H 1.07999 * 120.00396 * 1.19306 * 7 6 5 9 9 C 1.37877 * 119.99476 * 181.18558 * 7 6 5 10 10 N 1.31519 * 119.99991 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00521 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47130 * 89.99258 * 11 9 7 13 13 H 1.48501 * 109.47347 * 210.00072 * 11 9 7 14 14 H 1.48509 * 109.46645 * 329.99794 * 11 9 7 15 15 C 1.46892 * 110.99764 * 176.02285 * 5 4 3 16 16 H 1.08995 * 109.47602 * 168.80827 * 15 5 4 17 17 C 1.53001 * 109.47156 * 48.80688 * 15 5 4 18 18 C 1.53007 * 109.47138 * 288.80800 * 15 5 4 19 19 H 1.09002 * 109.50492 * 186.17492 * 18 15 5 20 20 C 1.53095 * 109.50602 * 306.25596 * 18 15 5 21 21 N 1.47018 * 109.25649 * 176.82525 * 20 18 15 22 22 C 1.47013 * 110.75497 * 301.38862 * 21 20 18 23 23 C 1.53101 * 109.25736 * 58.61405 * 22 21 20 24 24 O 1.43009 * 109.54225 * 66.06440 * 18 15 5 25 25 H 1.09010 * 109.47030 * 300.00168 * 1 2 3 26 26 H 1.09002 * 109.47312 * 59.99549 * 1 2 3 27 27 H 1.08999 * 109.47721 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47031 * 59.99796 * 3 2 1 29 29 H 1.09006 * 109.46837 * 300.00092 * 3 2 1 30 30 H 1.09003 * 109.46510 * 317.94421 * 4 3 2 31 31 H 1.08995 * 109.47137 * 197.94973 * 4 3 2 32 32 H 1.08996 * 109.46513 * 203.73561 * 6 5 4 33 33 H 1.08996 * 109.46955 * 323.73694 * 6 5 4 34 34 H 0.96996 * 120.00295 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47305 * 59.99962 * 17 15 5 36 36 H 1.09004 * 109.47299 * 180.02562 * 17 15 5 37 37 H 1.09002 * 109.47164 * 299.99880 * 17 15 5 38 38 H 1.09004 * 109.50636 * 56.89498 * 20 18 15 39 39 H 1.08996 * 109.54653 * 296.78640 * 20 18 15 40 40 H 1.00900 * 110.99877 * 65.16932 * 21 20 18 41 41 H 1.08994 * 109.50276 * 178.55315 * 22 21 20 42 42 H 1.09001 * 109.50417 * 298.68264 * 22 21 20 43 43 H 1.08999 * 109.50183 * 183.21818 * 23 22 21 44 44 H 1.09000 * 109.49961 * 63.08911 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.0002 0.8578 -1.3553 6 6 3.4272 -0.4140 -1.8159 7 6 2.0533 -0.1692 -2.3846 8 1 1.6541 0.8337 -2.4197 9 6 1.3058 -1.2258 -2.8601 10 7 0.1065 -1.0123 -3.3559 11 14 1.9959 -2.9606 -2.7988 12 1 1.6204 -3.5975 -1.5110 13 1 1.4403 -3.7544 -3.9242 14 1 3.4757 -2.9089 -2.9126 15 6 5.4676 0.8265 -1.4152 16 1 5.7834 0.3927 -2.3639 17 6 6.0071 -0.0218 -0.2618 18 6 6.0133 2.2512 -1.2991 19 1 7.0923 2.2413 -1.4529 20 6 5.3542 3.1389 -2.3580 21 7 5.8250 4.5218 -2.1927 22 6 5.5087 5.0226 -0.8471 23 6 6.1663 4.1158 0.1966 24 8 5.7210 2.7710 0.0007 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8376 0.3952 0.6875 31 1 3.9750 2.1305 0.3160 32 1 4.0681 -0.8434 -2.5860 33 1 3.3551 -1.1052 -0.9763 34 1 -0.4195 -1.7556 -3.6901 35 1 5.6184 -1.0367 -0.3445 36 1 7.0960 -0.0447 -0.3059 37 1 5.6913 0.4120 0.6870 38 1 4.2713 3.1063 -2.2375 39 1 5.6207 2.7800 -3.3520 40 1 6.8137 4.5922 -2.3816 41 1 5.8887 6.0383 -0.7382 42 1 4.4283 5.0200 -0.7025 43 1 5.8876 4.4497 1.1960 44 1 7.2498 4.1603 0.0862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699588922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:15 Heat of formation + Delta-G solvation = -59.437024 kcal Electronic energy + Delta-G solvation = -23697.369182 eV Core-core repulsion = 20458.039252 eV Total energy + Delta-G solvation = -3239.329930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87881 -37.66933 -35.96221 -34.34526 -32.60409 -31.63156 -29.64385 -28.73089 -26.54435 -26.08089 -24.93164 -23.73021 -22.05154 -21.49177 -20.80677 -19.07801 -16.90622 -16.41448 -16.09740 -15.53974 -15.28427 -14.93037 -14.66795 -14.61336 -14.19146 -13.92127 -13.43176 -13.29527 -12.87626 -12.72844 -12.48626 -12.13561 -11.69852 -11.65040 -11.54420 -11.21434 -11.11826 -10.94921 -10.84475 -10.74574 -10.54161 -10.42294 -10.30060 -9.85849 -9.76019 -9.35249 -9.05840 -8.33199 -8.24588 -8.13641 -7.23016 -5.81104 -3.66860 3.42648 3.48346 3.51342 3.81575 4.27419 4.63309 4.68461 4.88750 4.98487 5.03430 5.09714 5.28793 5.36915 5.41913 5.52946 5.59917 5.68089 5.73212 5.85494 5.94897 6.03485 6.06671 6.13826 6.24749 6.28833 6.36088 6.55257 6.56788 6.58396 6.79067 6.87794 6.96030 6.96862 7.01021 7.21199 7.26404 7.38179 7.85511 8.06085 8.18992 8.42993 8.88320 9.23567 9.83489 11.32511 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.006441 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.707753 B = 4345.787934 C = 4615.903365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.355 6.355 3 C 0.074 3.926 4 C 0.057 3.943 5 N -0.514 5.514 6 C 0.163 3.837 7 C -0.451 4.451 8 H 0.078 0.922 9 C 0.068 3.932 10 N -0.912 5.912 11 Si 0.866 3.134 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.274 1.274 15 C 0.088 3.912 16 H 0.088 0.912 17 C -0.178 4.178 18 C 0.068 3.932 19 H 0.048 0.952 20 C 0.034 3.966 21 N -0.686 5.686 22 C 0.023 3.977 23 C 0.020 3.980 24 O -0.365 6.365 25 H 0.007 0.993 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.013 0.987 33 H -0.002 1.002 34 H 0.256 0.744 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.332 0.668 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.565 8.808 6.958 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.273 6.273 3 C -0.003 4.003 4 C -0.070 4.070 5 N -0.237 5.237 6 C 0.037 3.963 7 C -0.490 4.490 8 H 0.096 0.904 9 C -0.131 4.131 10 N -0.554 5.554 11 Si 0.695 3.305 12 H -0.208 1.208 13 H -0.220 1.220 14 H -0.199 1.199 15 C -0.022 4.022 16 H 0.106 0.894 17 C -0.237 4.237 18 C 0.008 3.992 19 H 0.066 0.934 20 C -0.095 4.095 21 N -0.314 5.314 22 C -0.107 4.107 23 C -0.059 4.059 24 O -0.284 6.284 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.031 0.969 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.148 0.852 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.689 9.093 6.388 15.419 hybrid contribution 1.191 -1.922 0.974 2.462 sum 11.880 7.171 7.362 15.709 Atomic orbital electron populations 1.22362 0.82704 1.01244 0.98063 1.88075 1.18257 1.26238 1.94690 1.22309 0.93336 0.86298 0.98331 1.22396 0.93599 1.01119 0.89908 1.62300 1.03160 1.35588 1.22698 1.20252 0.96191 0.85680 0.94130 1.20854 0.97304 0.95542 1.35271 0.90418 1.24665 0.94803 0.97589 0.96020 1.69870 1.10619 1.30898 1.44038 0.87025 0.79462 0.86788 0.77256 1.20750 1.21998 1.19885 1.21735 0.90631 0.91527 0.98349 0.89403 1.22380 1.00080 1.00491 1.00785 1.22886 0.96951 0.95011 0.84362 0.93369 1.22645 1.03487 0.85242 0.98121 1.60908 1.21314 1.22395 1.26736 1.22623 1.02310 0.97958 0.87844 1.23230 0.97523 0.84579 1.00571 1.88112 1.80506 1.27141 1.32623 0.97491 0.93011 0.91545 0.96258 0.92156 0.95327 0.88428 0.96941 0.98414 0.93377 0.92706 0.93514 0.91455 0.87292 0.90076 0.85197 0.90416 0.89730 0.88911 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 10.52 101.05 1.06 2.20 16 2 O -0.35 -8.21 7.10 -35.23 -0.25 -8.46 16 3 C 0.07 1.51 5.29 37.16 0.20 1.71 16 4 C 0.06 1.09 4.18 -3.82 -0.02 1.07 16 5 N -0.51 -10.17 3.33 -228.09 -0.76 -10.93 16 6 C 0.16 3.89 2.83 -4.98 -0.01 3.87 16 7 C -0.45 -12.19 6.15 -34.44 -0.21 -12.40 16 8 H 0.08 2.29 6.30 -52.49 -0.33 1.96 16 9 C 0.07 1.91 5.37 -17.82 -0.10 1.81 16 10 N -0.91 -27.06 13.96 55.43 0.77 -26.28 16 11 Si 0.87 22.09 27.44 -169.99 -4.67 17.42 16 12 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 14 H -0.27 -6.79 6.58 56.52 0.37 -6.41 16 15 C 0.09 1.45 2.36 -67.71 -0.16 1.29 16 16 H 0.09 1.45 7.65 -51.93 -0.40 1.06 16 17 C -0.18 -2.79 8.15 37.16 0.30 -2.49 16 18 C 0.07 0.94 2.65 -26.68 -0.07 0.87 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 20 C 0.03 0.49 5.87 -3.71 -0.02 0.46 16 21 N -0.69 -8.29 6.93 -113.49 -0.79 -9.07 16 22 C 0.02 0.24 6.76 -3.71 -0.03 0.22 16 23 C 0.02 0.21 7.01 37.21 0.26 0.47 16 24 O -0.36 -5.06 6.40 -35.23 -0.23 -5.28 16 25 H 0.01 0.12 8.14 -51.92 -0.42 -0.30 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 1.35 6.50 -51.93 -0.34 1.01 16 30 H 0.03 0.57 6.37 -51.93 -0.33 0.24 16 31 H 0.10 1.71 5.06 -51.93 -0.26 1.44 16 32 H 0.01 0.31 6.65 -51.93 -0.35 -0.04 16 33 H 0.00 -0.05 6.50 -51.93 -0.34 -0.39 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.05 0.94 7.62 -51.93 -0.40 0.54 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.08 5.81 -51.93 -0.30 0.78 16 38 H 0.11 1.90 7.34 -51.93 -0.38 1.52 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.33 3.38 8.89 -39.29 -0.35 3.03 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -29.61 325.66 -7.38 -36.99 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.58 Total: 1.62 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 1.21 Total: -0.92 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.77 Total: -46.29 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.48 Total: -13.74 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.61 -7.38 -36.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699588922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.444 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds