Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00249 * 2 1 4 4 C 1.53002 * 109.47487 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47037 * 77.94092 * 4 3 2 6 6 C 1.46900 * 111.00074 * 299.97817 * 5 4 3 7 7 C 1.50701 * 109.46867 * 83.73528 * 6 5 4 8 8 H 1.07999 * 120.00396 * 1.19306 * 7 6 5 9 9 C 1.37877 * 119.99476 * 181.18558 * 7 6 5 10 10 N 1.31519 * 119.99991 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00521 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47130 * 89.99258 * 11 9 7 13 13 H 1.48501 * 109.47347 * 210.00072 * 11 9 7 14 14 H 1.48509 * 109.46645 * 329.99794 * 11 9 7 15 15 C 1.46892 * 110.99764 * 176.02285 * 5 4 3 16 16 H 1.08995 * 109.47602 * 168.80827 * 15 5 4 17 17 C 1.53001 * 109.47156 * 48.80688 * 15 5 4 18 18 C 1.53007 * 109.47138 * 288.80800 * 15 5 4 19 19 H 1.09002 * 109.50492 * 186.17492 * 18 15 5 20 20 C 1.53095 * 109.50602 * 306.25596 * 18 15 5 21 21 N 1.47018 * 109.25649 * 176.82525 * 20 18 15 22 22 C 1.47013 * 110.75497 * 301.38862 * 21 20 18 23 23 C 1.53101 * 109.25736 * 58.61405 * 22 21 20 24 24 O 1.43009 * 109.54225 * 66.06440 * 18 15 5 25 25 H 1.09010 * 109.47030 * 300.00168 * 1 2 3 26 26 H 1.09002 * 109.47312 * 59.99549 * 1 2 3 27 27 H 1.08999 * 109.47721 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47031 * 59.99796 * 3 2 1 29 29 H 1.09006 * 109.46837 * 300.00092 * 3 2 1 30 30 H 1.09003 * 109.46510 * 317.94421 * 4 3 2 31 31 H 1.08995 * 109.47137 * 197.94973 * 4 3 2 32 32 H 1.08996 * 109.46513 * 203.73561 * 6 5 4 33 33 H 1.08996 * 109.46955 * 323.73694 * 6 5 4 34 34 H 0.96996 * 120.00295 * 180.02562 * 10 9 7 35 35 H 1.08995 * 109.47305 * 59.99962 * 17 15 5 36 36 H 1.09004 * 109.47299 * 180.02562 * 17 15 5 37 37 H 1.09002 * 109.47164 * 299.99880 * 17 15 5 38 38 H 1.09004 * 109.50636 * 56.89498 * 20 18 15 39 39 H 1.08996 * 109.54653 * 296.78640 * 20 18 15 40 40 H 1.00900 * 110.99877 * 65.16932 * 21 20 18 41 41 H 1.08994 * 109.50276 * 178.55315 * 22 21 20 42 42 H 1.09001 * 109.50417 * 298.68264 * 22 21 20 43 43 H 1.08999 * 109.50183 * 183.21818 * 23 22 21 44 44 H 1.09000 * 109.49961 * 63.08911 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.0002 0.8578 -1.3553 6 6 3.4272 -0.4140 -1.8159 7 6 2.0533 -0.1692 -2.3846 8 1 1.6541 0.8337 -2.4197 9 6 1.3058 -1.2258 -2.8601 10 7 0.1065 -1.0123 -3.3559 11 14 1.9959 -2.9606 -2.7988 12 1 1.6204 -3.5975 -1.5110 13 1 1.4403 -3.7544 -3.9242 14 1 3.4757 -2.9089 -2.9126 15 6 5.4676 0.8265 -1.4152 16 1 5.7834 0.3927 -2.3639 17 6 6.0071 -0.0218 -0.2618 18 6 6.0133 2.2512 -1.2991 19 1 7.0923 2.2413 -1.4529 20 6 5.3542 3.1389 -2.3580 21 7 5.8250 4.5218 -2.1927 22 6 5.5087 5.0226 -0.8471 23 6 6.1663 4.1158 0.1966 24 8 5.7210 2.7710 0.0007 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 3.8376 0.3952 0.6875 31 1 3.9750 2.1305 0.3160 32 1 4.0681 -0.8434 -2.5860 33 1 3.3551 -1.1052 -0.9763 34 1 -0.4195 -1.7556 -3.6901 35 1 5.6184 -1.0367 -0.3445 36 1 7.0960 -0.0447 -0.3059 37 1 5.6913 0.4120 0.6870 38 1 4.2713 3.1063 -2.2375 39 1 5.6207 2.7800 -3.3520 40 1 6.8137 4.5922 -2.3816 41 1 5.8887 6.0383 -0.7382 42 1 4.4283 5.0200 -0.7025 43 1 5.8876 4.4497 1.1960 44 1 7.2498 4.1603 0.0862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699588922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -82.039757 kcal Electronic energy + Delta-G solvation = -23698.349310 eV Core-core repulsion = 20458.039252 eV Total energy + Delta-G solvation = -3240.310059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02308 -39.18568 -37.55951 -35.36580 -34.57115 -33.12840 -30.89985 -30.46340 -28.21737 -27.24282 -26.66367 -24.78147 -23.76859 -22.97419 -21.96615 -20.60242 -18.88338 -17.54179 -17.21380 -17.12390 -16.68562 -16.38813 -16.10336 -15.85805 -15.64066 -15.53232 -15.03909 -14.87993 -14.54546 -14.11271 -13.98463 -13.53523 -13.31608 -12.99841 -12.86877 -12.70584 -12.57018 -12.43546 -12.33039 -12.13963 -11.99532 -11.87481 -11.76655 -11.62109 -11.51501 -11.13609 -10.65936 -10.49284 -10.06208 -9.13334 -8.80446 -8.01177 -5.88923 1.37561 1.40125 1.46027 2.50286 2.80665 3.20161 3.29722 3.34775 3.44267 3.87820 3.95648 4.17099 4.22036 4.31009 4.38401 4.45068 4.50370 4.50911 4.55296 4.62228 4.72201 4.76373 4.79682 4.83548 4.87415 4.96133 5.03309 5.07999 5.09822 5.15986 5.26666 5.36317 5.39422 5.44225 5.82096 5.97884 6.17603 6.32410 6.52588 6.54524 6.70887 6.85108 7.01868 7.63785 9.14733 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.022746 B = 0.006441 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.707753 B = 4345.787934 C = 4615.903365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 O -0.379 6.379 3 C 0.074 3.926 4 C 0.068 3.932 5 N -0.521 5.521 6 C 0.178 3.822 7 C -0.435 4.435 8 H 0.044 0.956 9 C 0.020 3.980 10 N -0.949 5.949 11 Si 0.915 3.085 12 H -0.283 1.283 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.081 3.919 16 H 0.086 0.914 17 C -0.169 4.169 18 C 0.080 3.920 19 H 0.075 0.925 20 C 0.042 3.958 21 N -0.691 5.691 22 C 0.024 3.976 23 C 0.019 3.981 24 O -0.384 6.384 25 H 0.044 0.956 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.032 0.968 30 H 0.024 0.976 31 H 0.118 0.882 32 H 0.010 0.990 33 H -0.015 1.015 34 H 0.254 0.746 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.347 0.653 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.177 9.556 8.263 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.297 6.297 3 C -0.002 4.002 4 C -0.059 4.059 5 N -0.245 5.245 6 C 0.051 3.949 7 C -0.474 4.474 8 H 0.063 0.937 9 C -0.174 4.174 10 N -0.593 5.593 11 Si 0.743 3.257 12 H -0.210 1.210 13 H -0.219 1.219 14 H -0.185 1.185 15 C -0.028 4.028 16 H 0.104 0.896 17 C -0.228 4.228 18 C 0.020 3.980 19 H 0.092 0.908 20 C -0.088 4.088 21 N -0.320 5.320 22 C -0.106 4.106 23 C -0.058 4.058 24 O -0.303 6.303 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.135 0.865 32 H 0.028 0.972 33 H 0.002 0.998 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.165 0.835 41 H 0.122 0.878 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.338 9.863 7.702 18.290 hybrid contribution 0.392 -1.998 0.598 2.122 sum 13.730 7.865 8.300 17.868 Atomic orbital electron populations 1.22266 0.82189 1.00835 0.98295 1.88014 1.18982 1.27910 1.94804 1.22413 0.94338 0.85210 0.98280 1.22384 0.92482 1.01819 0.89247 1.62189 1.05698 1.33182 1.23434 1.19935 0.94469 0.87264 0.93277 1.20941 0.98549 0.93835 1.34070 0.93749 1.25246 0.95070 1.00805 0.96319 1.70004 1.11942 1.31651 1.45708 0.86207 0.79594 0.82957 0.76920 1.20953 1.21941 1.18460 1.21873 0.88230 0.93920 0.98816 0.89582 1.22274 1.01671 0.98924 0.99951 1.22691 0.97913 0.92957 0.84431 0.90762 1.22397 1.01266 0.86848 0.98306 1.60827 1.22487 1.20825 1.27889 1.22654 1.01292 0.99437 0.87215 1.23409 0.98567 0.82633 1.01227 1.88029 1.81121 1.28990 1.32196 0.93780 0.96109 0.92287 0.93441 0.94958 0.95794 0.86462 0.97249 0.99771 0.93653 0.94617 0.90838 0.91774 0.91083 0.90347 0.83510 0.87798 0.91812 0.87284 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.66 10.52 113.37 1.19 3.85 16 2 O -0.38 -17.69 7.10 -148.98 -1.06 -18.74 16 3 C 0.07 3.04 5.29 71.98 0.38 3.42 16 4 C 0.07 2.53 4.18 86.30 0.36 2.89 16 5 N -0.52 -20.56 3.33 -875.54 -2.91 -23.47 16 6 C 0.18 8.48 2.83 85.56 0.24 8.72 16 7 C -0.44 -24.16 6.15 25.60 0.16 -24.00 16 8 H 0.04 2.74 6.30 -2.91 -0.02 2.72 16 9 C 0.02 1.18 5.37 84.65 0.45 1.63 16 10 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 11 Si 0.92 45.89 27.44 68.60 1.88 47.77 16 12 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 14 H -0.26 -12.36 6.58 99.48 0.65 -11.71 16 15 C 0.08 2.54 2.36 44.92 0.11 2.65 16 16 H 0.09 2.72 7.65 -2.39 -0.02 2.70 16 17 C -0.17 -4.92 8.15 71.98 0.59 -4.33 16 18 C 0.08 2.01 2.65 30.63 0.08 2.09 16 19 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 20 C 0.04 1.14 5.87 86.31 0.51 1.64 16 21 N -0.69 -15.19 6.93 -512.99 -3.55 -18.74 16 22 C 0.02 0.45 6.76 86.32 0.58 1.03 16 23 C 0.02 0.34 7.01 72.02 0.50 0.85 16 24 O -0.38 -9.52 6.40 -148.98 -0.95 -10.48 16 25 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.03 1.50 6.50 -2.38 -0.02 1.48 16 30 H 0.02 0.92 6.37 -2.39 -0.02 0.91 16 31 H 0.12 3.92 5.06 -2.39 -0.01 3.91 16 32 H 0.01 0.46 6.65 -2.39 -0.02 0.44 16 33 H -0.02 -0.78 6.50 -2.39 -0.02 -0.80 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.03 1.16 7.62 -2.39 -0.02 1.14 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.90 5.81 -2.39 -0.01 1.89 16 38 H 0.07 2.51 7.34 -2.38 -0.02 2.49 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.35 5.95 8.89 -89.69 -0.80 5.16 16 41 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -65.33 325.66 -1.02 -66.34 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.13 Total: 14.63 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.16 Total: 0.45 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -6.17 Total: -99.97 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -2.01 Total: -29.22 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -65.33 -1.02 -66.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699588922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.699 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds