Wall clock time and date at job start Mon Mar 30 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.50716 * 2 1 4 4 C 1.53097 * 109.50306 * 120.12909 * 2 1 3 5 5 N 1.47015 * 109.26158 * 63.08650 * 4 2 1 6 6 C 1.46900 * 111.00069 * 182.38988 * 5 4 2 7 7 C 1.47016 * 110.75095 * 58.61128 * 5 4 2 8 8 C 1.53096 * 109.25899 * 301.38372 * 7 5 4 9 9 H 1.09000 * 109.50742 * 296.87086 * 8 7 5 10 10 C 1.53002 * 109.50411 * 176.78355 * 8 7 5 11 11 N 1.46908 * 109.46811 * 180.02562 * 10 8 7 12 12 C 1.46902 * 110.99561 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46739 * 180.02562 * 12 11 10 14 14 O 1.42901 * 109.47346 * 64.99793 * 13 12 11 15 15 C 1.42897 * 113.99948 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47121 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99435 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99991 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99857 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46851 * 60.00252 * 20 18 16 22 22 H 1.48498 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47298 * 300.00017 * 20 18 16 24 24 O 1.43013 * 109.50417 * 239.90849 * 2 1 3 25 25 H 1.08997 * 109.47096 * 180.08943 * 1 2 3 26 26 H 1.09001 * 109.46560 * 300.09142 * 1 2 3 27 27 H 1.08999 * 109.47174 * 60.09076 * 1 2 3 28 28 H 1.08996 * 109.51093 * 303.14590 * 4 2 1 29 29 H 1.09010 * 109.50353 * 183.02317 * 4 2 1 30 30 H 1.09003 * 109.47171 * 296.36614 * 6 5 4 31 31 H 1.08995 * 109.47191 * 56.36040 * 6 5 4 32 32 H 1.09000 * 109.47150 * 176.36599 * 6 5 4 33 33 H 1.09004 * 109.50347 * 61.32188 * 7 5 4 34 34 H 1.08998 * 109.50027 * 181.40886 * 7 5 4 35 35 H 1.09000 * 109.47322 * 300.00108 * 10 8 7 36 36 H 1.08998 * 109.46814 * 60.00329 * 10 8 7 37 37 H 1.00899 * 110.99756 * 56.05003 * 11 10 8 38 38 H 1.09001 * 109.47136 * 300.00114 * 12 11 10 39 39 H 1.08992 * 109.47231 * 59.99950 * 12 11 10 40 40 H 1.08994 * 109.47310 * 184.99905 * 13 12 11 41 41 H 1.09008 * 109.47009 * 305.00001 * 13 12 11 42 42 H 1.09001 * 109.47242 * 299.99572 * 15 14 13 43 43 H 1.08998 * 109.47325 * 60.00117 * 15 14 13 44 44 H 0.96998 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0412 -0.7244 1.2482 5 7 1.6110 -2.1295 1.2038 6 6 2.0335 -2.8479 2.4134 7 6 2.1185 -2.7916 -0.0067 8 6 1.6065 -2.0466 -1.2423 9 1 0.5187 -2.1067 -1.2788 10 6 2.1960 -2.6823 -2.5029 11 7 1.7046 -1.9664 -3.6880 12 6 2.2507 -2.5510 -4.9201 13 6 1.7182 -1.7803 -6.1297 14 8 2.2125 -0.4399 -6.0958 15 6 1.7714 0.3699 -7.1874 16 6 2.3501 1.7548 -7.0513 17 1 2.9902 1.9927 -6.2146 18 6 2.0614 2.7183 -7.9943 19 7 1.2815 2.4287 -9.0129 20 14 2.7781 4.4350 -7.8253 21 1 4.2610 4.3556 -7.8359 22 1 2.3199 5.2766 -8.9597 23 1 2.3237 5.0374 -6.5462 24 8 2.0076 -0.6759 -1.1664 25 1 -0.3633 -1.0276 0.0016 26 1 -0.3632 0.5153 0.8892 27 1 -0.3633 0.5124 -0.8908 28 1 1.6332 -0.2468 2.1389 29 1 3.1300 -0.6777 1.2758 30 1 3.1223 -2.8732 2.4593 31 1 1.6446 -2.3368 3.2940 32 1 1.6474 -3.8668 2.3844 33 1 3.2084 -2.7781 0.0008 34 1 1.7674 -3.8232 -0.0315 35 1 3.2836 -2.6205 -2.4665 36 1 1.8931 -3.7279 -2.5581 37 1 1.9171 -0.9818 -3.6294 38 1 3.3388 -2.4891 -4.9004 39 1 1.9476 -3.5955 -4.9920 40 1 2.0513 -2.2673 -7.0462 41 1 0.6286 -1.7666 -6.1009 42 1 2.1054 -0.0723 -8.1260 43 1 0.6830 0.4282 -7.1801 44 1 1.0781 3.1066 -9.6761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700330585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:37 Heat of formation + Delta-G solvation = -91.578077 kcal Electronic energy + Delta-G solvation = -21559.129204 eV Core-core repulsion = 18318.405533 eV Total energy + Delta-G solvation = -3240.723671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11794 -37.17616 -36.01054 -35.28332 -32.86718 -32.35823 -30.28995 -28.58392 -27.23801 -26.78654 -25.05314 -23.29612 -22.29586 -21.91536 -21.23723 -19.55871 -16.80713 -16.51852 -16.32510 -15.97127 -15.52617 -15.42583 -15.08979 -14.75096 -14.40719 -14.27809 -14.02505 -13.57395 -13.44991 -13.06260 -12.69615 -12.32002 -12.15905 -12.11072 -11.94850 -11.82831 -11.60762 -11.34723 -11.28666 -11.04770 -10.77621 -10.68894 -10.56857 -10.27689 -9.95065 -9.62577 -9.06262 -8.76576 -8.65767 -8.13295 -8.11017 -6.06065 -4.07510 3.35660 3.37876 3.42138 3.49995 3.69473 4.31020 4.39350 4.65407 4.73195 4.89069 4.91944 5.00571 5.04690 5.13888 5.18988 5.25048 5.30240 5.30481 5.38470 5.46689 5.48275 5.50872 5.57728 5.63377 5.79053 5.85261 5.97518 6.00568 6.13685 6.26328 6.29359 6.41080 6.63886 6.64064 7.16489 7.18493 7.30782 7.49718 7.78726 7.84258 8.20930 8.64111 9.05844 9.57077 11.05513 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.003579 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.745535 B = 7820.564569 C = 8750.930932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.105 0.895 4 C 0.023 3.977 5 N -0.538 5.538 6 C 0.025 3.975 7 C 0.024 3.976 8 C 0.093 3.907 9 H 0.079 0.921 10 C 0.069 3.931 11 N -0.684 5.684 12 C 0.065 3.935 13 C 0.062 3.938 14 O -0.398 6.398 15 C 0.198 3.802 16 C -0.514 4.514 17 H 0.065 0.935 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 O -0.369 6.369 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.365 0.635 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 -11.523 21.028 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.032 3.968 3 H 0.123 0.877 4 C -0.106 4.106 5 N -0.263 5.263 6 C -0.123 4.123 7 C -0.104 4.104 8 C 0.034 3.966 9 H 0.097 0.903 10 C -0.062 4.062 11 N -0.318 5.318 12 C -0.064 4.064 13 C -0.016 4.016 14 O -0.318 6.318 15 C 0.123 3.877 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 O -0.288 6.288 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.563 -11.636 20.806 23.846 hybrid contribution 1.805 0.945 0.093 2.039 sum 1.242 -10.691 20.900 23.508 Atomic orbital electron populations 1.22274 0.95363 1.03351 1.02225 1.22236 0.94644 0.95951 0.83921 0.87689 1.22842 0.98566 0.89313 0.99850 1.62172 1.59526 1.02225 1.02339 1.22380 0.98239 0.99276 0.92446 1.22792 0.98214 0.98973 0.90462 1.22200 0.99869 0.81801 0.92697 0.90279 1.21894 0.97230 0.97823 0.89223 1.60447 1.61839 1.09288 1.00190 1.21948 0.97205 0.97636 0.89589 1.22284 0.97963 0.85800 0.95505 1.87803 1.73207 1.20137 1.50657 1.20161 0.94370 0.89409 0.83724 1.21031 1.30134 0.94447 1.09577 0.91642 1.24942 0.95305 0.99312 0.94953 1.69953 1.36650 1.34665 1.12612 0.86402 0.79400 0.83072 0.77625 1.20084 1.21200 1.19976 1.88090 1.75163 1.22942 1.42623 0.91147 0.92119 0.91690 0.89758 0.94083 0.95630 0.91260 0.91194 0.94043 0.89680 0.94958 0.90141 0.81410 0.94864 0.90818 0.94218 0.93571 0.97891 0.97632 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 8.89 37.16 0.33 -1.56 16 2 C 0.09 1.02 3.92 -26.68 -0.10 0.92 16 3 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.02 0.22 5.08 -3.71 -0.02 0.20 16 5 N -0.54 -5.16 4.35 -242.59 -1.06 -6.22 16 6 C 0.02 0.18 9.60 60.06 0.58 0.76 16 7 C 0.02 0.24 4.95 -3.71 -0.02 0.22 16 8 C 0.09 1.13 2.68 -26.68 -0.07 1.05 16 9 H 0.08 1.02 6.50 -51.93 -0.34 0.68 16 10 C 0.07 0.87 5.42 -3.82 -0.02 0.84 16 11 N -0.68 -10.90 6.50 -113.78 -0.74 -11.64 16 12 C 0.07 1.04 6.11 -3.82 -0.02 1.01 16 13 C 0.06 1.21 6.28 37.16 0.23 1.44 16 14 O -0.40 -9.86 9.85 -35.23 -0.35 -10.20 16 15 C 0.20 5.57 5.69 36.01 0.20 5.78 16 16 C -0.51 -15.47 9.43 -34.44 -0.32 -15.79 16 17 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 20 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 O -0.37 -5.21 9.63 -35.23 -0.34 -5.55 16 25 H 0.07 0.80 6.13 -51.93 -0.32 0.48 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.37 6.80 7.69 -39.29 -0.30 6.50 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -32.05 350.96 -8.92 -40.97 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.11 Total: 0.38 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 0.67 Total: -3.57 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -1.06 Total: -44.53 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.69 Total: -15.75 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.05 -8.92 -40.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700330585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.605 kcal (2) G-P(sol) polarization free energy of solvation -32.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds