Wall clock time and date at job start Mon Mar 30 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.50716 * 2 1 4 4 C 1.53097 * 109.50306 * 120.12909 * 2 1 3 5 5 N 1.47015 * 109.26158 * 63.08650 * 4 2 1 6 6 C 1.46900 * 111.00069 * 182.38988 * 5 4 2 7 7 C 1.47016 * 110.75095 * 58.61128 * 5 4 2 8 8 C 1.53096 * 109.25899 * 301.38372 * 7 5 4 9 9 H 1.09000 * 109.50742 * 296.87086 * 8 7 5 10 10 C 1.53002 * 109.50411 * 176.78355 * 8 7 5 11 11 N 1.46908 * 109.46811 * 180.02562 * 10 8 7 12 12 C 1.46902 * 110.99561 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46739 * 180.02562 * 12 11 10 14 14 O 1.42901 * 109.47346 * 64.99793 * 13 12 11 15 15 C 1.42897 * 113.99948 * 180.02562 * 14 13 12 16 16 C 1.50707 * 109.47121 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99435 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99991 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99857 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46851 * 60.00252 * 20 18 16 22 22 H 1.48498 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47298 * 300.00017 * 20 18 16 24 24 O 1.43013 * 109.50417 * 239.90849 * 2 1 3 25 25 H 1.08997 * 109.47096 * 180.08943 * 1 2 3 26 26 H 1.09001 * 109.46560 * 300.09142 * 1 2 3 27 27 H 1.08999 * 109.47174 * 60.09076 * 1 2 3 28 28 H 1.08996 * 109.51093 * 303.14590 * 4 2 1 29 29 H 1.09010 * 109.50353 * 183.02317 * 4 2 1 30 30 H 1.09003 * 109.47171 * 296.36614 * 6 5 4 31 31 H 1.08995 * 109.47191 * 56.36040 * 6 5 4 32 32 H 1.09000 * 109.47150 * 176.36599 * 6 5 4 33 33 H 1.09004 * 109.50347 * 61.32188 * 7 5 4 34 34 H 1.08998 * 109.50027 * 181.40886 * 7 5 4 35 35 H 1.09000 * 109.47322 * 300.00108 * 10 8 7 36 36 H 1.08998 * 109.46814 * 60.00329 * 10 8 7 37 37 H 1.00899 * 110.99756 * 56.05003 * 11 10 8 38 38 H 1.09001 * 109.47136 * 300.00114 * 12 11 10 39 39 H 1.08992 * 109.47231 * 59.99950 * 12 11 10 40 40 H 1.08994 * 109.47310 * 184.99905 * 13 12 11 41 41 H 1.09008 * 109.47009 * 305.00001 * 13 12 11 42 42 H 1.09001 * 109.47242 * 299.99572 * 15 14 13 43 43 H 1.08998 * 109.47325 * 60.00117 * 15 14 13 44 44 H 0.96998 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0412 -0.7244 1.2482 5 7 1.6110 -2.1295 1.2038 6 6 2.0335 -2.8479 2.4134 7 6 2.1185 -2.7916 -0.0067 8 6 1.6065 -2.0466 -1.2423 9 1 0.5187 -2.1067 -1.2788 10 6 2.1960 -2.6823 -2.5029 11 7 1.7046 -1.9664 -3.6880 12 6 2.2507 -2.5510 -4.9201 13 6 1.7182 -1.7803 -6.1297 14 8 2.2125 -0.4399 -6.0958 15 6 1.7714 0.3699 -7.1874 16 6 2.3501 1.7548 -7.0513 17 1 2.9902 1.9927 -6.2146 18 6 2.0614 2.7183 -7.9943 19 7 1.2815 2.4287 -9.0129 20 14 2.7781 4.4350 -7.8253 21 1 4.2610 4.3556 -7.8359 22 1 2.3199 5.2766 -8.9597 23 1 2.3237 5.0374 -6.5462 24 8 2.0076 -0.6759 -1.1664 25 1 -0.3633 -1.0276 0.0016 26 1 -0.3632 0.5153 0.8892 27 1 -0.3633 0.5124 -0.8908 28 1 1.6332 -0.2468 2.1389 29 1 3.1300 -0.6777 1.2758 30 1 3.1223 -2.8732 2.4593 31 1 1.6446 -2.3368 3.2940 32 1 1.6474 -3.8668 2.3844 33 1 3.2084 -2.7781 0.0008 34 1 1.7674 -3.8232 -0.0315 35 1 3.2836 -2.6205 -2.4665 36 1 1.8931 -3.7279 -2.5581 37 1 1.9171 -0.9818 -3.6294 38 1 3.3388 -2.4891 -4.9004 39 1 1.9476 -3.5955 -4.9920 40 1 2.0513 -2.2673 -7.0462 41 1 0.6286 -1.7666 -6.1009 42 1 2.1054 -0.0723 -8.1260 43 1 0.6830 0.4282 -7.1801 44 1 1.0781 3.1066 -9.6761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700330585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:36 Heat of formation + Delta-G solvation = -116.019062 kcal Electronic energy + Delta-G solvation = -21560.189045 eV Core-core repulsion = 18318.405533 eV Total energy + Delta-G solvation = -3241.783512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98765 -38.87570 -37.08254 -36.43180 -34.91686 -33.55651 -31.36601 -30.01524 -28.69564 -27.96048 -26.11763 -24.51971 -24.09885 -22.89461 -22.62321 -20.42685 -18.65176 -17.76965 -17.47955 -17.35002 -16.87483 -16.68740 -16.36666 -16.10216 -15.70808 -15.50819 -15.15078 -14.97019 -14.65988 -14.33485 -13.82048 -13.48033 -13.32156 -13.19368 -12.98363 -12.94388 -12.80542 -12.69239 -12.67275 -12.53280 -12.36995 -12.19832 -12.04598 -11.73698 -11.30305 -11.21758 -10.86808 -10.53461 -10.22768 -9.39866 -9.34961 -8.31957 -6.44562 1.39343 1.44604 1.52954 2.34855 2.71364 2.84254 3.01565 3.21522 3.26591 3.84090 3.92797 3.98370 4.08449 4.18783 4.20084 4.34237 4.37277 4.42029 4.51587 4.56429 4.57124 4.61399 4.64404 4.71481 4.77232 4.79650 4.85152 4.94589 4.97594 4.99943 5.05395 5.13098 5.18349 5.39598 5.54465 5.90001 5.95836 5.96917 6.09290 6.31078 6.38810 6.53616 6.81964 7.27283 8.80308 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.003579 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.745535 B = 7820.564569 C = 8750.930932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 H 0.107 0.893 4 C 0.028 3.972 5 N -0.547 5.547 6 C 0.025 3.975 7 C 0.031 3.969 8 C 0.094 3.906 9 H 0.069 0.931 10 C 0.070 3.930 11 N -0.694 5.694 12 C 0.075 3.925 13 C 0.053 3.947 14 O -0.410 6.410 15 C 0.212 3.788 16 C -0.549 4.549 17 H 0.060 0.940 18 C 0.006 3.994 19 N -0.931 5.931 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.265 1.265 24 O -0.400 6.400 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.035 0.965 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.103 0.897 35 H 0.029 0.971 36 H 0.107 0.893 37 H 0.346 0.654 38 H 0.031 0.969 39 H 0.110 0.890 40 H 0.051 0.949 41 H 0.043 0.957 42 H -0.014 1.014 43 H -0.016 1.016 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -11.790 22.570 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.024 3.976 3 H 0.124 0.876 4 C -0.100 4.100 5 N -0.272 5.272 6 C -0.123 4.123 7 C -0.098 4.098 8 C 0.036 3.964 9 H 0.087 0.913 10 C -0.059 4.059 11 N -0.326 5.326 12 C -0.054 4.054 13 C -0.024 4.024 14 O -0.330 6.330 15 C 0.137 3.863 16 C -0.587 4.587 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.806 3.194 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.190 1.190 24 O -0.320 6.320 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.121 0.879 35 H 0.047 0.953 36 H 0.125 0.875 37 H 0.164 0.836 38 H 0.049 0.951 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.004 0.996 43 H 0.002 0.998 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.090 -11.947 22.368 25.359 hybrid contribution 1.608 0.943 -0.377 1.902 sum 1.518 -11.004 21.991 24.637 Atomic orbital electron populations 1.22190 0.95128 1.02899 1.02159 1.22419 0.94867 0.96237 0.84092 0.87560 1.22779 0.98193 0.89534 0.99464 1.62194 1.59731 1.02294 1.02949 1.22441 0.98391 0.99712 0.91719 1.22711 0.97808 0.99503 0.89757 1.22200 0.99228 0.81431 0.93565 0.91308 1.22015 0.97028 0.98773 0.88110 1.60497 1.62278 1.08361 1.01453 1.21943 0.96869 0.98614 0.88004 1.22624 0.98001 0.83645 0.98114 1.87769 1.73447 1.22523 1.49289 1.19781 0.92783 0.89705 0.84023 1.21361 1.31216 0.95871 1.10244 0.92126 1.25973 0.95206 1.03980 0.94087 1.70063 1.37242 1.36479 1.13216 0.85232 0.78906 0.77025 0.78229 1.18999 1.19842 1.19023 1.88048 1.75685 1.24104 1.44115 0.91715 0.90186 0.93667 0.87892 0.94644 0.95557 0.90164 0.90181 0.94523 0.87868 0.95263 0.87529 0.83624 0.95122 0.87162 0.93131 0.93903 0.99647 0.99835 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 8.89 71.98 0.64 -2.91 16 2 C 0.08 1.82 3.92 30.63 0.12 1.94 16 3 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 4 C 0.03 0.51 5.08 86.31 0.44 0.94 16 5 N -0.55 -9.49 4.35 -921.42 -4.01 -13.50 16 6 C 0.02 0.31 9.60 127.69 1.23 1.53 16 7 C 0.03 0.57 4.95 86.31 0.43 1.00 16 8 C 0.09 2.22 2.68 30.63 0.08 2.30 16 9 H 0.07 1.75 6.50 -2.39 -0.02 1.74 16 10 C 0.07 1.70 5.42 86.30 0.47 2.16 16 11 N -0.69 -21.95 6.50 -513.87 -3.34 -25.30 16 12 C 0.07 2.29 6.11 86.30 0.53 2.81 16 13 C 0.05 2.08 6.28 71.98 0.45 2.53 16 14 O -0.41 -20.89 9.85 -148.98 -1.47 -22.36 16 15 C 0.21 12.40 5.69 71.24 0.41 12.81 16 16 C -0.55 -33.80 9.43 25.60 0.24 -33.56 16 17 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 18 C 0.01 0.35 5.46 84.65 0.46 0.82 16 19 N -0.93 -57.25 13.29 21.44 0.28 -56.96 16 20 Si 0.98 45.40 29.54 68.60 2.03 47.43 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 O -0.40 -11.41 9.63 -148.98 -1.43 -12.84 16 25 H 0.06 1.44 6.13 -2.39 -0.01 1.43 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.35 13.23 7.69 -89.69 -0.69 12.54 16 38 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 42 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.74 350.96 -2.19 -71.93 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.26 Total: 19.21 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.49 Total: -7.62 kcal Atomic # 7 Polarization: -88.69 SS G_CDS: -7.06 Total: -95.75 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -2.90 Total: -35.20 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.74 -2.19 -71.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700330585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.084 kcal (2) G-P(sol) polarization free energy of solvation -69.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds