Wall clock time and date at job start Mon Mar 30 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51084 * 2 1 4 4 C 1.53103 * 109.50755 * 239.87070 * 2 1 3 5 5 N 1.47008 * 109.25925 * 296.91555 * 4 2 1 6 6 C 1.46903 * 111.00264 * 177.60534 * 5 4 2 7 7 C 1.47013 * 110.75503 * 301.38394 * 5 4 2 8 8 C 1.53099 * 109.25851 * 58.61164 * 7 5 4 9 9 H 1.09002 * 109.53800 * 63.11494 * 8 7 5 10 10 C 1.53000 * 109.50497 * 183.22078 * 8 7 5 11 11 N 1.46899 * 109.46901 * 184.78590 * 10 8 7 12 12 C 1.46906 * 111.00141 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47215 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.46795 * 65.00306 * 13 12 11 15 15 C 1.42905 * 113.99899 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47179 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 O 1.43015 * 109.26014 * 303.15402 * 8 7 5 25 25 H 1.09003 * 109.46963 * 299.90538 * 1 2 3 26 26 H 1.09000 * 109.46920 * 59.91116 * 1 2 3 27 27 H 1.09007 * 109.46928 * 179.91007 * 1 2 3 28 28 H 1.08997 * 109.50381 * 56.85121 * 4 2 1 29 29 H 1.08996 * 109.50749 * 176.93338 * 4 2 1 30 30 H 1.09000 * 109.47073 * 63.95253 * 6 5 4 31 31 H 1.08993 * 109.47181 * 183.95497 * 6 5 4 32 32 H 1.09007 * 109.46681 * 303.95371 * 6 5 4 33 33 H 1.09005 * 109.50484 * 298.68108 * 7 5 4 34 34 H 1.08997 * 109.50801 * 178.54966 * 7 5 4 35 35 H 1.09003 * 109.47375 * 64.78392 * 10 8 7 36 36 H 1.09002 * 109.46990 * 304.78384 * 10 8 7 37 37 H 1.00895 * 111.00221 * 56.04803 * 11 10 8 38 38 H 1.09000 * 109.46758 * 60.00031 * 12 11 10 39 39 H 1.08993 * 109.47047 * 300.00608 * 12 11 10 40 40 H 1.08995 * 109.47274 * 305.00344 * 13 12 11 41 41 H 1.09002 * 109.46559 * 184.99809 * 13 12 11 42 42 H 1.09007 * 109.46810 * 59.99780 * 15 14 13 43 43 H 1.09003 * 109.46936 * 300.00543 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 1.6110 -2.1294 -1.2038 6 6 2.0335 -2.8479 -2.4134 7 6 2.1185 -2.7917 0.0067 8 6 1.6065 -2.0466 1.2423 9 1 0.5188 -2.1061 1.2792 10 6 2.1960 -2.6823 2.5029 11 7 1.6165 -2.0419 3.6911 12 6 2.1601 -2.6286 4.9234 13 6 1.5347 -1.9372 6.1365 14 8 0.1332 -2.2138 6.1724 15 6 -0.5500 -1.6116 7.2736 16 6 -2.0129 -1.9681 7.2127 17 1 -2.3839 -2.5924 6.4133 18 6 -2.8780 -1.4971 8.1776 19 7 -2.4263 -0.7373 9.1514 20 14 -4.6915 -1.9384 8.1017 21 1 -5.4016 -1.3127 9.2462 22 1 -5.2694 -1.4400 6.8278 23 1 -4.8453 -3.4138 8.1712 24 8 2.0076 -0.6759 1.1664 25 1 -0.3633 0.5124 0.8909 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0277 -0.0016 28 1 1.6332 -0.2467 -2.1389 29 1 3.1298 -0.6771 -1.2762 30 1 3.1223 -2.8781 -2.4564 31 1 1.6426 -3.8650 -2.3871 32 1 1.6492 -2.3336 -3.2943 33 1 3.2084 -2.7781 -0.0008 34 1 1.7668 -3.8230 0.0319 35 1 3.2774 -2.5454 2.5073 36 1 1.9647 -3.7474 2.5149 37 1 0.6092 -2.0990 3.6776 38 1 3.2412 -2.4916 4.9448 39 1 1.9282 -3.6932 4.9519 40 1 1.6909 -0.8610 6.0618 41 1 2.0021 -2.3099 7.0480 42 1 -0.4371 -0.5286 7.2230 43 1 -0.1258 -1.9778 8.2085 44 1 -3.0350 -0.4057 9.8300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700330586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:40 Heat of formation + Delta-G solvation = -89.967641 kcal Electronic energy + Delta-G solvation = -21454.153291 eV Core-core repulsion = 18213.499454 eV Total energy + Delta-G solvation = -3240.653837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10120 -37.20026 -35.98648 -35.33245 -32.88129 -32.37830 -30.27928 -28.57622 -27.24178 -26.80204 -25.06414 -23.28977 -22.31667 -21.94012 -21.29447 -19.56624 -16.78284 -16.63585 -16.32243 -15.74680 -15.64774 -15.42941 -15.03581 -14.83579 -14.40747 -14.31115 -13.96113 -13.54646 -13.43917 -13.08977 -12.76273 -12.38027 -12.28736 -12.00297 -11.97145 -11.82159 -11.62126 -11.31534 -11.30931 -11.09962 -10.79271 -10.71829 -10.51132 -10.28285 -9.97096 -9.60387 -9.08400 -8.78280 -8.65833 -8.13081 -8.11152 -6.07762 -4.09499 3.34118 3.36696 3.40510 3.50068 3.69351 4.28231 4.37582 4.64716 4.73397 4.85241 4.90270 4.99319 5.01347 5.14970 5.16997 5.23699 5.28510 5.31318 5.39267 5.40465 5.46626 5.51187 5.58143 5.61429 5.77477 5.83634 5.93735 5.98516 6.13314 6.26131 6.29831 6.40985 6.63558 6.64183 7.15686 7.19217 7.31693 7.48420 7.71864 7.81793 8.18997 8.61983 9.03442 9.55101 11.03762 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.003321 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.000678 B = 8428.834646 C = 9005.914177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.538 5.538 6 C 0.025 3.975 7 C 0.024 3.976 8 C 0.094 3.906 9 H 0.071 0.929 10 C 0.068 3.932 11 N -0.678 5.678 12 C 0.067 3.933 13 C 0.062 3.938 14 O -0.400 6.400 15 C 0.198 3.802 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.274 1.274 23 H -0.275 1.275 24 O -0.355 6.355 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.355 0.645 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.040 0.960 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 -2.462 -21.357 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.029 3.971 3 H 0.121 0.879 4 C -0.105 4.105 5 N -0.263 5.263 6 C -0.123 4.123 7 C -0.104 4.104 8 C 0.036 3.964 9 H 0.089 0.911 10 C -0.063 4.063 11 N -0.310 5.310 12 C -0.062 4.062 13 C -0.015 4.015 14 O -0.320 6.320 15 C 0.123 3.877 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.212 1.212 22 H -0.200 1.200 23 H -0.201 1.201 24 O -0.274 6.274 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.175 0.825 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.024 0.976 43 H 0.021 0.979 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.037 -1.873 -21.162 23.940 hybrid contribution -0.466 -0.960 -0.017 1.068 sum 10.571 -2.833 -21.179 23.839 Atomic orbital electron populations 1.22281 0.95413 1.03429 1.02181 1.22248 0.94643 0.95938 0.84301 0.87884 1.22838 0.98455 0.89347 0.99893 1.62160 1.59572 1.02223 1.02342 1.22382 0.98189 0.99334 0.92420 1.22794 0.98248 0.98967 0.90441 1.22141 0.99261 0.82268 0.92747 0.91065 1.21892 1.00184 0.95001 0.89176 1.60363 1.12742 1.57722 1.00211 1.21947 0.98498 0.96432 0.89356 1.22287 0.84931 0.98886 0.95443 1.87777 1.17476 1.75148 1.51581 1.20162 0.91709 0.92422 0.83358 1.21020 0.91750 1.31659 1.10890 0.91685 1.24952 0.99483 0.95046 0.95037 1.69957 1.35677 1.34441 1.13700 0.86399 0.83796 0.78693 0.77592 1.21178 1.19985 1.20079 1.88193 1.74767 1.22541 1.41888 0.91713 0.92163 0.91161 0.89855 0.94154 0.95637 0.91171 0.91257 0.93929 0.89736 0.90699 0.94021 0.82546 0.90753 0.94923 0.93461 0.94211 0.97601 0.97876 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.88 37.16 0.33 -1.57 16 2 C 0.09 0.94 3.92 -26.68 -0.10 0.83 16 3 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.02 0.21 5.08 -3.71 -0.02 0.19 16 5 N -0.54 -5.18 4.35 -242.60 -1.06 -6.23 16 6 C 0.02 0.18 9.61 60.07 0.58 0.76 16 7 C 0.02 0.24 4.95 -3.71 -0.02 0.22 16 8 C 0.09 1.14 2.58 -26.68 -0.07 1.07 16 9 H 0.07 0.93 6.50 -51.93 -0.34 0.60 16 10 C 0.07 0.84 5.36 -3.82 -0.02 0.82 16 11 N -0.68 -10.65 6.45 -113.78 -0.73 -11.39 16 12 C 0.07 1.05 6.11 -3.82 -0.02 1.02 16 13 C 0.06 1.20 6.28 37.16 0.23 1.44 16 14 O -0.40 -9.72 9.85 -35.23 -0.35 -10.07 16 15 C 0.20 5.53 5.69 36.00 0.20 5.73 16 16 C -0.51 -15.34 9.43 -34.44 -0.32 -15.66 16 17 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 20 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 O -0.36 -4.84 10.23 -35.23 -0.36 -5.20 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.83 6.13 -51.93 -0.32 0.51 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.35 6.15 8.29 -39.29 -0.33 5.83 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 43 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -31.97 351.94 -8.94 -40.91 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.14 Total: -0.24 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 0.67 Total: -3.59 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -1.05 Total: -44.14 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.71 Total: -15.27 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.97 -8.94 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700330586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.053 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds