Wall clock time and date at job start Mon Mar 30 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.51084 * 2 1 4 4 C 1.53103 * 109.50755 * 239.87070 * 2 1 3 5 5 N 1.47008 * 109.25925 * 296.91555 * 4 2 1 6 6 C 1.46903 * 111.00264 * 177.60534 * 5 4 2 7 7 C 1.47013 * 110.75503 * 301.38394 * 5 4 2 8 8 C 1.53099 * 109.25851 * 58.61164 * 7 5 4 9 9 H 1.09002 * 109.53800 * 63.11494 * 8 7 5 10 10 C 1.53000 * 109.50497 * 183.22078 * 8 7 5 11 11 N 1.46899 * 109.46901 * 184.78590 * 10 8 7 12 12 C 1.46906 * 111.00141 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47215 * 179.97438 * 12 11 10 14 14 O 1.42897 * 109.46795 * 65.00306 * 13 12 11 15 15 C 1.42905 * 113.99899 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47179 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 O 1.43015 * 109.26014 * 303.15402 * 8 7 5 25 25 H 1.09003 * 109.46963 * 299.90538 * 1 2 3 26 26 H 1.09000 * 109.46920 * 59.91116 * 1 2 3 27 27 H 1.09007 * 109.46928 * 179.91007 * 1 2 3 28 28 H 1.08997 * 109.50381 * 56.85121 * 4 2 1 29 29 H 1.08996 * 109.50749 * 176.93338 * 4 2 1 30 30 H 1.09000 * 109.47073 * 63.95253 * 6 5 4 31 31 H 1.08993 * 109.47181 * 183.95497 * 6 5 4 32 32 H 1.09007 * 109.46681 * 303.95371 * 6 5 4 33 33 H 1.09005 * 109.50484 * 298.68108 * 7 5 4 34 34 H 1.08997 * 109.50801 * 178.54966 * 7 5 4 35 35 H 1.09003 * 109.47375 * 64.78392 * 10 8 7 36 36 H 1.09002 * 109.46990 * 304.78384 * 10 8 7 37 37 H 1.00895 * 111.00221 * 56.04803 * 11 10 8 38 38 H 1.09000 * 109.46758 * 60.00031 * 12 11 10 39 39 H 1.08993 * 109.47047 * 300.00608 * 12 11 10 40 40 H 1.08995 * 109.47274 * 305.00344 * 13 12 11 41 41 H 1.09002 * 109.46559 * 184.99809 * 13 12 11 42 42 H 1.09007 * 109.46810 * 59.99780 * 15 14 13 43 43 H 1.09003 * 109.46936 * 300.00543 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 1.6110 -2.1294 -1.2038 6 6 2.0335 -2.8479 -2.4134 7 6 2.1185 -2.7917 0.0067 8 6 1.6065 -2.0466 1.2423 9 1 0.5188 -2.1061 1.2792 10 6 2.1960 -2.6823 2.5029 11 7 1.6165 -2.0419 3.6911 12 6 2.1601 -2.6286 4.9234 13 6 1.5347 -1.9372 6.1365 14 8 0.1332 -2.2138 6.1724 15 6 -0.5500 -1.6116 7.2736 16 6 -2.0129 -1.9681 7.2127 17 1 -2.3839 -2.5924 6.4133 18 6 -2.8780 -1.4971 8.1776 19 7 -2.4263 -0.7373 9.1514 20 14 -4.6915 -1.9384 8.1017 21 1 -5.4016 -1.3127 9.2462 22 1 -5.2694 -1.4400 6.8278 23 1 -4.8453 -3.4138 8.1712 24 8 2.0076 -0.6759 1.1664 25 1 -0.3633 0.5124 0.8909 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0277 -0.0016 28 1 1.6332 -0.2467 -2.1389 29 1 3.1298 -0.6771 -1.2762 30 1 3.1223 -2.8781 -2.4564 31 1 1.6426 -3.8650 -2.3871 32 1 1.6492 -2.3336 -3.2943 33 1 3.2084 -2.7781 -0.0008 34 1 1.7668 -3.8230 0.0319 35 1 3.2774 -2.5454 2.5073 36 1 1.9647 -3.7474 2.5149 37 1 0.6092 -2.0990 3.6776 38 1 3.2412 -2.4916 4.9448 39 1 1.9282 -3.6932 4.9519 40 1 1.6909 -0.8610 6.0618 41 1 2.0021 -2.3099 7.0480 42 1 -0.4371 -0.5286 7.2230 43 1 -0.1258 -1.9778 8.2085 44 1 -3.0350 -0.4057 9.8300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700330586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:40 Heat of formation + Delta-G solvation = -114.316287 kcal Electronic energy + Delta-G solvation = -21455.209128 eV Core-core repulsion = 18213.499454 eV Total energy + Delta-G solvation = -3241.709674 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.94998 -38.88233 -37.06588 -36.44291 -34.91341 -33.55370 -31.35666 -29.98935 -28.68829 -27.95347 -26.12164 -24.51696 -24.07556 -22.89612 -22.68988 -20.42214 -18.64524 -17.77323 -17.44906 -17.36396 -16.94556 -16.42184 -16.32772 -16.09427 -15.90023 -15.43909 -15.12719 -14.91645 -14.65098 -14.26909 -13.90879 -13.48740 -13.37495 -13.20265 -13.00180 -12.94444 -12.76236 -12.73225 -12.65429 -12.53716 -12.35571 -12.18776 -12.04885 -11.72407 -11.29224 -11.19048 -10.86353 -10.49479 -10.22939 -9.37307 -9.30336 -8.31636 -6.44402 1.40191 1.45350 1.53660 2.35074 2.73842 2.84642 3.02080 3.20383 3.25676 3.86577 3.91896 3.99055 4.07497 4.15385 4.23033 4.33765 4.38138 4.43344 4.50466 4.56851 4.57193 4.58868 4.63124 4.71500 4.77752 4.80524 4.85772 4.95801 4.97340 4.99651 5.02755 5.12138 5.18431 5.39739 5.54686 5.91571 5.95847 5.98415 6.09578 6.31435 6.44666 6.53375 6.81440 7.27423 8.80666 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.022305 B = 0.003321 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.000678 B = 8428.834646 C = 9005.914177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.112 0.888 4 C 0.029 3.971 5 N -0.551 5.551 6 C 0.025 3.975 7 C 0.031 3.969 8 C 0.096 3.904 9 H 0.055 0.945 10 C 0.070 3.930 11 N -0.693 5.693 12 C 0.077 3.923 13 C 0.054 3.946 14 O -0.408 6.408 15 C 0.212 3.788 16 C -0.549 4.549 17 H 0.063 0.937 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.275 1.275 22 H -0.265 1.265 23 H -0.264 1.264 24 O -0.382 6.382 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.342 0.658 38 H 0.103 0.897 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.050 0.950 42 H -0.018 1.018 43 H -0.015 1.015 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -3.342 -22.930 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 H 0.130 0.870 4 C -0.099 4.099 5 N -0.276 5.276 6 C -0.122 4.122 7 C -0.098 4.098 8 C 0.037 3.963 9 H 0.073 0.927 10 C -0.059 4.059 11 N -0.324 5.324 12 C -0.052 4.052 13 C -0.023 4.023 14 O -0.328 6.328 15 C 0.137 3.863 16 C -0.586 4.586 17 H 0.082 0.918 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.807 3.193 21 H -0.200 1.200 22 H -0.190 1.190 23 H -0.189 1.189 24 O -0.301 6.301 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.119 0.881 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.159 0.841 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.000 1.000 43 H 0.003 0.997 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.883 -2.760 -22.758 25.376 hybrid contribution -0.318 -0.643 0.454 0.849 sum 10.565 -3.403 -22.304 24.913 Atomic orbital electron populations 1.22211 0.95719 1.02599 1.02108 1.22440 0.94429 0.96539 0.84404 0.87003 1.22787 0.98405 0.89233 0.99515 1.62171 1.59986 1.02551 1.02913 1.22429 0.98524 0.99547 0.91715 1.22694 0.98203 0.99124 0.89749 1.22111 0.98331 0.82164 0.93662 0.92689 1.21952 1.00295 0.95662 0.88002 1.60394 1.11928 1.58760 1.01367 1.21904 0.99522 0.96039 0.87731 1.22598 0.82504 0.99131 0.98034 1.87743 1.20234 1.74751 1.50076 1.19784 0.91849 0.90979 0.83720 1.21368 0.92939 1.32694 1.11645 0.91849 1.25998 1.04906 0.94330 0.94121 1.70074 1.37802 1.34917 1.14283 0.85215 0.76937 0.78958 0.78185 1.20021 1.18982 1.18885 1.88143 1.75163 1.23388 1.43431 0.93676 0.90262 0.92309 0.88095 0.94167 0.95231 0.90585 0.90191 0.93742 0.88644 0.89962 0.92438 0.84060 0.87921 0.94406 0.94263 0.93193 0.99980 0.99689 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 8.88 71.98 0.64 -2.99 16 2 C 0.08 1.66 3.92 30.63 0.12 1.78 16 3 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.03 0.48 5.08 86.32 0.44 0.92 16 5 N -0.55 -9.64 4.35 -921.44 -4.01 -13.64 16 6 C 0.03 0.32 9.61 127.69 1.23 1.54 16 7 C 0.03 0.57 4.95 86.31 0.43 1.00 16 8 C 0.10 2.27 2.58 30.63 0.08 2.35 16 9 H 0.06 1.47 6.50 -2.39 -0.02 1.45 16 10 C 0.07 1.68 5.36 86.30 0.46 2.14 16 11 N -0.69 -21.61 6.45 -513.88 -3.32 -24.93 16 12 C 0.08 2.33 6.11 86.30 0.53 2.86 16 13 C 0.05 2.12 6.28 71.98 0.45 2.57 16 14 O -0.41 -20.32 9.85 -148.98 -1.47 -21.79 16 15 C 0.21 12.25 5.69 71.23 0.41 12.66 16 16 C -0.55 -33.28 9.43 25.60 0.24 -33.04 16 17 H 0.06 3.76 7.81 -2.91 -0.02 3.74 16 18 C 0.00 0.28 5.46 84.66 0.46 0.75 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 20 Si 0.98 44.89 29.54 68.60 2.03 46.91 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 24 O -0.38 -10.31 10.23 -148.98 -1.52 -11.84 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.39 6.13 -2.38 -0.01 1.37 16 28 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.34 12.09 8.29 -89.70 -0.74 11.34 16 38 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 43 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.98 351.94 -2.32 -71.30 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.20 Total: 18.22 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.48 Total: -7.45 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -7.04 Total: -95.35 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -2.99 Total: -33.63 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.98 -2.32 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700330586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.021 kcal (2) G-P(sol) polarization free energy of solvation -68.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds