Wall clock time and date at job start Mon Mar 30 2020 04:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99695 * 2 1 4 4 H 1.48496 * 109.47243 * 270.00641 * 3 2 1 5 5 H 1.48507 * 109.47335 * 30.00471 * 3 2 1 6 6 H 1.48498 * 109.47116 * 150.00427 * 3 2 1 7 7 C 1.38946 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00435 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99686 * 359.72677 * 10 9 7 12 12 C 1.50698 * 120.00361 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47057 * 179.72410 * 12 10 9 14 14 C 1.46898 * 110.99873 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47117 * 174.46457 * 14 13 12 16 16 C 1.52992 * 109.54454 * 305.06476 * 15 14 13 17 17 O 1.42905 * 109.47432 * 304.70010 * 16 15 14 18 18 C 1.53176 * 109.54233 * 184.79711 * 15 14 13 19 19 C 1.53085 * 109.16985 * 297.11325 * 18 15 14 20 20 O 1.42906 * 109.41738 * 302.39882 * 19 18 15 21 21 C 1.42904 * 114.10238 * 61.14605 * 20 19 18 22 22 C 1.53089 * 109.41648 * 298.85232 * 21 20 19 23 23 H 0.96998 * 120.00486 * 359.97438 * 1 2 3 24 24 H 0.97008 * 119.99601 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47139 * 299.72847 * 12 10 9 26 26 H 1.09006 * 109.46994 * 59.72860 * 12 10 9 27 27 H 1.00901 * 110.99568 * 56.05055 * 13 12 10 28 28 H 1.08999 * 109.47474 * 294.46703 * 14 13 12 29 29 H 1.08998 * 109.47060 * 54.46653 * 14 13 12 30 30 H 1.08999 * 109.47143 * 64.70181 * 16 15 14 31 31 H 1.09000 * 109.47475 * 184.70031 * 16 15 14 32 32 H 0.96700 * 113.99953 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.52268 * 57.02603 * 18 15 14 34 34 H 1.09002 * 109.52275 * 177.20762 * 18 15 14 35 35 H 1.08998 * 109.49008 * 182.40711 * 19 18 15 36 36 H 1.09007 * 109.48853 * 62.38005 * 19 18 15 37 37 H 1.08988 * 109.48328 * 178.86313 * 21 20 19 38 38 H 1.08999 * 109.48312 * 58.83560 * 21 20 19 39 39 H 1.09006 * 109.52364 * 297.70062 * 22 21 20 40 40 H 1.09000 * 109.52703 * 177.50926 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4403 0.6999 7 6 2.0090 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0075 12 6 1.2440 -4.8629 -0.0010 13 7 2.1987 -5.9794 -0.0090 14 6 1.4984 -7.2708 -0.0093 15 6 2.5167 -8.4030 -0.1568 16 6 3.3652 -8.1685 -1.4082 17 8 2.5098 -8.0285 -2.5444 18 6 1.7811 -9.7412 -0.2776 19 6 0.9974 -10.0020 1.0113 20 8 1.8950 -9.9936 2.1232 21 6 2.5761 -8.7519 2.3139 22 6 3.4233 -8.4409 1.0773 23 1 -0.4851 0.8400 0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6220 -4.9230 0.8921 26 1 0.6126 -4.9183 -0.8879 27 1 2.8376 -5.9143 0.7692 28 1 0.9557 -7.3901 0.9284 29 1 0.7961 -7.3030 -0.8422 30 1 3.9543 -7.2601 -1.2827 31 1 4.0330 -9.0168 -1.5586 32 1 2.9810 -7.8773 -3.3752 33 1 1.0923 -9.7033 -1.1215 34 1 2.5045 -10.5418 -0.4323 35 1 0.5062 -10.9730 0.9480 36 1 0.2466 -9.2230 1.1444 37 1 3.2222 -8.8223 3.1889 38 1 1.8463 -7.9563 2.4640 39 1 4.1798 -9.2152 0.9499 40 1 3.9088 -7.4730 1.2023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700926532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:38 Heat of formation + Delta-G solvation = -137.927153 kcal Electronic energy + Delta-G solvation = -21746.699085 eV Core-core repulsion = 18368.132472 eV Total energy + Delta-G solvation = -3378.566612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.28184 -38.19626 -37.01532 -35.33313 -33.95855 -33.14391 -31.29033 -31.17579 -27.88318 -27.00240 -24.96722 -23.93469 -23.04729 -22.52506 -19.34521 -18.59233 -17.85644 -17.25455 -16.35878 -16.12570 -16.06752 -15.51288 -15.35788 -14.68584 -14.54172 -14.21325 -13.98438 -13.86013 -13.30122 -13.14138 -12.95683 -12.56004 -12.36468 -11.98961 -11.60260 -11.53313 -11.46304 -11.27782 -11.04019 -10.96011 -10.48684 -10.39269 -10.35957 -10.20997 -9.76144 -9.56056 -9.49935 -8.42072 -7.98511 -7.92488 -6.40819 -3.81714 3.18261 3.26691 3.32442 3.74378 3.92661 4.06005 4.20259 4.45527 4.55606 4.66893 4.86454 4.96945 5.05790 5.12129 5.18224 5.25352 5.30240 5.44962 5.51016 5.56524 5.63511 5.68183 5.75167 5.81874 5.88385 5.95501 6.00539 6.05250 6.15970 6.26124 6.30420 7.05215 7.26604 7.55773 7.70943 7.76511 8.07444 8.62477 9.18746 9.55722 10.07177 10.77009 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.003681 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.457992 B = 7605.553197 C = 7843.235533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.585 6.585 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.071 3.929 15 C -0.052 4.052 16 C 0.098 3.902 17 O -0.567 6.567 18 C -0.140 4.140 19 C 0.057 3.943 20 O -0.385 6.385 21 C 0.060 3.940 22 C -0.150 4.150 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.040 0.960 26 H 0.086 0.914 27 H 0.344 0.656 28 H 0.024 0.976 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.376 0.624 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -18.313 0.389 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.469 6.469 12 C -0.081 4.081 13 N -0.295 5.295 14 C -0.059 4.059 15 C -0.053 4.053 16 C 0.020 3.980 17 O -0.372 6.372 18 C -0.178 4.178 19 C -0.020 4.020 20 O -0.304 6.304 21 C -0.017 4.017 22 C -0.188 4.188 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.058 0.942 26 H 0.104 0.896 27 H 0.163 0.837 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.614 -18.368 0.293 18.441 hybrid contribution -0.166 1.204 0.247 1.240 sum 1.448 -17.164 0.540 17.234 Atomic orbital electron populations 1.69613 1.05943 1.28140 1.50666 1.25258 0.95623 0.99705 0.97350 0.85859 0.79207 0.80827 0.78397 1.20397 1.20942 1.19441 1.19698 0.93352 0.82265 1.47570 0.87957 1.41870 1.09209 1.04618 1.64402 1.19823 0.88367 0.84729 0.84300 1.90507 1.13790 1.87121 1.55488 1.21648 0.94405 0.90942 1.01063 1.60025 1.18593 0.99889 1.50995 1.21994 0.95360 0.88542 0.99974 1.20580 0.95833 0.94701 0.94177 1.22004 0.91352 0.99483 0.85119 1.86407 1.37114 1.95646 1.17993 1.22175 1.00428 0.96645 0.98540 1.22644 0.91601 1.02022 0.85714 1.87906 1.58774 1.34684 1.48995 1.22605 0.95154 0.86430 0.97493 1.22233 0.98664 1.03263 0.94602 0.91883 0.77466 0.94185 0.89580 0.83680 0.95773 0.90199 0.91803 0.95000 0.77825 0.90057 0.91207 0.89079 0.92981 0.88762 0.92965 0.90841 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.48 5.29 -10.97 -0.06 -14.54 16 10 C 0.44 10.55 7.82 -10.99 -0.09 10.47 16 11 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 12 C 0.05 0.95 6.16 -4.97 -0.03 0.91 16 13 N -0.66 -10.78 5.19 -115.06 -0.60 -11.38 16 14 C 0.07 0.93 3.79 -3.83 -0.01 0.92 16 15 C -0.05 -0.60 0.43 -154.33 -0.07 -0.67 16 16 C 0.10 1.17 5.63 37.15 0.21 1.38 16 17 O -0.57 -6.97 12.50 -35.23 -0.44 -7.41 16 18 C -0.14 -1.43 4.78 -26.60 -0.13 -1.56 16 19 C 0.06 0.57 6.57 37.20 0.24 0.81 16 20 O -0.38 -4.50 10.77 -35.23 -0.38 -4.87 16 21 C 0.06 0.63 6.57 37.20 0.24 0.88 16 22 C -0.15 -1.60 4.75 -26.59 -0.13 -1.73 16 23 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.34 5.69 6.85 -39.29 -0.27 5.42 16 28 H 0.02 0.31 5.03 -51.93 -0.26 0.05 16 29 H 0.08 1.13 7.73 -51.93 -0.40 0.73 16 30 H 0.06 0.88 7.64 -51.93 -0.40 0.48 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.38 3.26 9.12 45.56 0.42 3.68 16 33 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.52 6.72 -51.92 -0.35 0.17 16 37 H 0.09 0.87 8.14 -51.94 -0.42 0.44 16 38 H 0.05 0.57 6.49 -51.93 -0.34 0.23 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.94 6.70 -51.93 -0.35 0.59 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -32.13 319.68 -6.01 -38.14 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -5.15 Total: 15.57 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 0.01 Total: 3.36 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.07 Total: -49.93 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.73 Total: -28.08 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.13 -6.01 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700926532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.784 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds