Wall clock time and date at job start Mon Mar 30 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99695 * 2 1 4 4 H 1.48496 * 109.47243 * 270.00641 * 3 2 1 5 5 H 1.48507 * 109.47335 * 30.00471 * 3 2 1 6 6 H 1.48498 * 109.47116 * 150.00427 * 3 2 1 7 7 C 1.38946 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.37098 * 119.99892 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00435 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99686 * 359.72677 * 10 9 7 12 12 C 1.50698 * 120.00361 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47057 * 179.72410 * 12 10 9 14 14 C 1.46898 * 110.99873 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47117 * 174.46457 * 14 13 12 16 16 C 1.52992 * 109.54454 * 305.06476 * 15 14 13 17 17 O 1.42905 * 109.47432 * 304.70010 * 16 15 14 18 18 C 1.53176 * 109.54233 * 184.79711 * 15 14 13 19 19 C 1.53085 * 109.16985 * 297.11325 * 18 15 14 20 20 O 1.42906 * 109.41738 * 302.39882 * 19 18 15 21 21 C 1.42904 * 114.10238 * 61.14605 * 20 19 18 22 22 C 1.53089 * 109.41648 * 298.85232 * 21 20 19 23 23 H 0.96998 * 120.00486 * 359.97438 * 1 2 3 24 24 H 0.97008 * 119.99601 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.47139 * 299.72847 * 12 10 9 26 26 H 1.09006 * 109.46994 * 59.72860 * 12 10 9 27 27 H 1.00901 * 110.99568 * 56.05055 * 13 12 10 28 28 H 1.08999 * 109.47474 * 294.46703 * 14 13 12 29 29 H 1.08998 * 109.47060 * 54.46653 * 14 13 12 30 30 H 1.08999 * 109.47143 * 64.70181 * 16 15 14 31 31 H 1.09000 * 109.47475 * 184.70031 * 16 15 14 32 32 H 0.96700 * 113.99953 * 180.02562 * 17 16 15 33 33 H 1.08996 * 109.52268 * 57.02603 * 18 15 14 34 34 H 1.09002 * 109.52275 * 177.20762 * 18 15 14 35 35 H 1.08998 * 109.49008 * 182.40711 * 19 18 15 36 36 H 1.09007 * 109.48853 * 62.38005 * 19 18 15 37 37 H 1.08988 * 109.48328 * 178.86313 * 21 20 19 38 38 H 1.08999 * 109.48312 * 58.83560 * 21 20 19 39 39 H 1.09006 * 109.52364 * 297.70062 * 22 21 20 40 40 H 1.09000 * 109.52703 * 177.50926 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4455 2.6527 0.7002 6 1 3.5456 1.4403 0.6999 7 6 2.0090 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0075 12 6 1.2440 -4.8629 -0.0010 13 7 2.1987 -5.9794 -0.0090 14 6 1.4984 -7.2708 -0.0093 15 6 2.5167 -8.4030 -0.1568 16 6 3.3652 -8.1685 -1.4082 17 8 2.5098 -8.0285 -2.5444 18 6 1.7811 -9.7412 -0.2776 19 6 0.9974 -10.0020 1.0113 20 8 1.8950 -9.9936 2.1232 21 6 2.5761 -8.7519 2.3139 22 6 3.4233 -8.4409 1.0773 23 1 -0.4851 0.8400 0.0004 24 1 0.3535 -2.3906 0.0002 25 1 0.6220 -4.9230 0.8921 26 1 0.6126 -4.9183 -0.8879 27 1 2.8376 -5.9143 0.7692 28 1 0.9557 -7.3901 0.9284 29 1 0.7961 -7.3030 -0.8422 30 1 3.9543 -7.2601 -1.2827 31 1 4.0330 -9.0168 -1.5586 32 1 2.9810 -7.8773 -3.3752 33 1 1.0923 -9.7033 -1.1215 34 1 2.5045 -10.5418 -0.4323 35 1 0.5062 -10.9730 0.9480 36 1 0.2466 -9.2230 1.1444 37 1 3.2222 -8.8223 3.1889 38 1 1.8463 -7.9563 2.4640 39 1 4.1798 -9.2152 0.9499 40 1 3.9088 -7.4730 1.2023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700926532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:37 Heat of formation + Delta-G solvation = -164.862892 kcal Electronic energy + Delta-G solvation = -21747.867106 eV Core-core repulsion = 18368.132472 eV Total energy + Delta-G solvation = -3379.734634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20197 -40.06080 -37.96928 -36.56206 -35.86204 -34.33425 -33.24872 -32.08495 -29.20466 -28.09471 -26.65899 -25.05838 -24.19642 -23.40952 -21.14823 -19.97275 -19.57081 -18.19096 -17.71977 -17.23022 -17.09127 -16.87508 -16.48289 -16.27438 -15.79168 -15.69479 -15.37135 -15.13127 -14.57737 -14.37990 -14.10059 -13.91814 -13.50668 -13.28518 -13.11507 -13.05513 -12.84167 -12.43046 -12.34127 -12.24606 -12.12142 -11.93111 -11.51298 -11.37773 -11.20831 -10.70042 -10.44171 -10.32173 -10.02440 -9.25178 -8.47200 -5.96304 1.37841 1.41576 1.54455 2.04059 2.28664 2.88976 2.95823 3.19977 3.35540 3.55980 3.68703 3.78722 4.01986 4.10507 4.17250 4.30413 4.31206 4.39414 4.46954 4.54874 4.58324 4.71726 4.71790 4.79426 4.80859 4.84856 4.95603 5.04684 5.17174 5.27101 5.34955 5.40177 5.87693 6.09063 6.24680 6.41544 6.59060 6.98687 7.11569 7.55070 8.09946 8.70339 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.003681 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.457992 B = 7605.553197 C = 7843.235533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.621 6.621 12 C 0.066 3.934 13 N -0.671 5.671 14 C 0.077 3.923 15 C -0.052 4.052 16 C 0.100 3.900 17 O -0.581 6.581 18 C -0.132 4.132 19 C 0.054 3.946 20 O -0.397 6.397 21 C 0.059 3.941 22 C -0.145 4.145 23 H 0.278 0.722 24 H 0.396 0.604 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.341 0.659 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.050 0.950 32 H 0.389 0.611 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -19.050 0.494 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.227 3.773 11 O -0.508 6.508 12 C -0.066 4.066 13 N -0.303 5.303 14 C -0.052 4.052 15 C -0.053 4.053 16 C 0.022 3.978 17 O -0.388 6.388 18 C -0.170 4.170 19 C -0.022 4.022 20 O -0.316 6.316 21 C -0.017 4.017 22 C -0.183 4.183 23 H 0.087 0.913 24 H 0.230 0.770 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.160 0.840 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.238 0.762 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.222 -19.127 0.386 19.169 hybrid contribution -0.051 1.379 0.188 1.392 sum 1.171 -17.748 0.574 17.796 Atomic orbital electron populations 1.69675 1.06893 1.29331 1.50325 1.26051 0.96529 1.02447 0.96207 0.84918 0.77906 0.76798 0.78654 1.19670 1.19512 1.19661 1.19678 0.92726 0.84005 1.49986 0.90250 1.41941 1.09321 1.04757 1.65054 1.20805 0.88240 0.86044 0.82170 1.90477 1.15719 1.87944 1.56642 1.21496 0.94133 0.88411 1.02599 1.60021 1.18622 1.00560 1.51146 1.21990 0.95601 0.87498 1.00093 1.20602 0.95630 0.94711 0.94359 1.21970 0.91401 0.99069 0.85317 1.86367 1.37940 1.95675 1.18853 1.22104 1.00401 0.95798 0.98684 1.22768 0.91316 1.03087 0.85060 1.87897 1.59089 1.35033 1.49593 1.22654 0.95152 0.86058 0.97861 1.22191 0.98701 1.03055 0.94376 0.91281 0.77048 0.91989 0.88403 0.83960 0.94760 0.90926 0.94175 0.93165 0.76224 0.90136 0.90560 0.87279 0.93073 0.87518 0.93489 0.89933 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 2 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 3 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.33 -19.15 9.68 84.04 0.81 -18.33 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.84 5.29 -307.00 -1.62 -31.47 16 10 C 0.44 21.21 7.82 87.66 0.69 21.90 16 11 O -0.62 -34.50 15.78 -3.07 -0.05 -34.55 16 12 C 0.07 2.35 6.16 85.56 0.53 2.87 16 13 N -0.67 -21.43 5.19 -517.93 -2.69 -24.12 16 14 C 0.08 1.93 3.79 86.30 0.33 2.26 16 15 C -0.05 -1.13 0.43 -52.07 -0.02 -1.15 16 16 C 0.10 2.27 5.63 71.98 0.41 2.68 16 17 O -0.58 -13.62 12.50 -148.98 -1.86 -15.48 16 18 C -0.13 -2.42 4.78 30.68 0.15 -2.27 16 19 C 0.05 0.96 6.57 72.01 0.47 1.43 16 20 O -0.40 -8.47 10.77 -148.98 -1.60 -10.07 16 21 C 0.06 1.16 6.57 72.01 0.47 1.63 16 22 C -0.15 -2.91 4.75 30.68 0.15 -2.77 16 23 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 24 H 0.40 19.63 7.90 -92.70 -0.73 18.90 16 25 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 27 H 0.34 11.24 6.85 -89.69 -0.61 10.63 16 28 H 0.03 0.81 5.03 -2.39 -0.01 0.79 16 29 H 0.07 1.95 7.73 -2.39 -0.02 1.93 16 30 H 0.04 1.10 7.64 -2.39 -0.02 1.08 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.39 6.38 9.12 -74.06 -0.68 5.70 16 33 H 0.08 1.51 7.92 -2.39 -0.02 1.50 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.05 0.92 6.72 -2.38 -0.02 0.90 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 0.96 6.49 -2.39 -0.02 0.95 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.07 1.63 6.70 -2.39 -0.02 1.61 16 Total: -1.00 -68.17 319.68 -2.02 -70.19 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.94 Total: 42.20 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.44 Total: 8.03 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.03 Total: -105.39 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -3.51 Total: -60.10 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.17 -2.02 -70.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700926532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.676 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds