Wall clock time and date at job start Mon Mar 30 2020 05:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48506 * 109.47116 * 270.00159 * 3 2 1 5 5 H 1.48503 * 109.47256 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00058 * 3 2 1 7 7 C 1.37870 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47294 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46830 * 54.99987 * 11 10 9 13 13 N 1.46902 * 109.46897 * 295.00075 * 11 10 9 14 14 C 1.50694 * 109.47025 * 175.00237 * 11 10 9 15 15 O 1.21288 * 120.00037 * 100.00236 * 14 11 10 16 16 N 1.34776 * 120.00228 * 279.99756 * 14 11 10 17 17 C 1.46496 * 120.00478 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47580 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47293 * 179.97438 * 18 17 16 20 20 F 1.39905 * 112.85050 * 309.66638 * 19 18 17 21 21 C 1.53781 * 113.69312 * 80.93486 * 19 18 17 22 22 C 1.53779 * 87.08092 * 139.99220 * 21 19 18 23 23 C 1.53777 * 87.08235 * 334.56833 * 22 21 19 24 24 H 0.97000 * 120.00671 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47245 * 60.00476 * 9 7 2 26 26 H 1.08996 * 109.47176 * 299.99838 * 9 7 2 27 27 H 1.09003 * 109.47376 * 60.00154 * 10 9 7 28 28 H 1.08993 * 109.47752 * 300.00186 * 10 9 7 29 29 H 1.00902 * 110.99699 * 176.04145 * 13 11 10 30 30 H 1.00899 * 111.00144 * 300.00009 * 13 11 10 31 31 H 0.97003 * 119.99708 * 359.97438 * 16 14 11 32 32 H 1.09004 * 109.47234 * 59.99680 * 17 16 14 33 33 H 1.09004 * 109.47030 * 300.00489 * 17 16 14 34 34 H 1.09002 * 109.46403 * 59.99818 * 18 17 16 35 35 H 1.08995 * 109.46753 * 300.00300 * 18 17 16 36 36 H 1.08997 * 113.61414 * 254.54602 * 21 19 18 37 37 H 1.09005 * 113.60855 * 25.44101 * 21 19 18 38 38 H 1.09003 * 113.61115 * 220.02346 * 22 21 19 39 39 H 1.08995 * 113.61370 * 89.11749 * 22 21 19 40 40 H 1.09009 * 113.61922 * 270.88620 * 23 22 21 41 41 H 1.09003 * 113.61452 * 139.98026 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9871 0.0033 12 1 0.7875 -5.0077 -0.8377 13 7 0.7302 -5.1176 1.2595 14 6 2.4551 -6.1298 -0.1207 15 8 2.7880 -6.7526 0.8653 16 7 2.9567 -6.4598 -1.3274 17 6 3.9036 -7.5710 -1.4481 18 6 4.3154 -7.7335 -2.9126 19 6 5.3048 -8.8936 -3.0385 20 9 6.3644 -8.8051 -2.1291 21 6 4.6342 -10.2772 -3.0702 22 6 5.6613 -10.6633 -4.1475 23 6 5.7546 -9.1656 -4.4837 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 2.8728 -3.6038 0.8909 28 1 2.8714 -3.6047 -0.8889 29 1 0.1658 -5.9540 1.2583 30 1 1.3509 -5.1012 2.0548 31 1 2.6900 -5.9619 -2.1160 32 1 3.4323 -8.4897 -1.0986 33 1 4.7866 -7.3631 -0.8437 34 1 4.7868 -6.8148 -3.2615 35 1 3.4326 -7.9412 -3.5172 36 1 4.7441 -10.8370 -2.1414 37 1 3.6068 -10.2561 -3.4338 38 1 5.2429 -11.2664 -4.9534 39 1 6.5842 -11.0781 -3.7422 40 1 5.0336 -8.8407 -5.2339 41 1 6.7691 -8.8282 -4.6961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702449620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:23 Heat of formation + Delta-G solvation = -90.573977 kcal Electronic energy + Delta-G solvation = -20705.199290 eV Core-core repulsion = 17341.058855 eV Total energy + Delta-G solvation = -3364.140435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.00989 -39.76615 -38.51673 -35.55463 -34.96277 -32.78992 -31.23971 -30.07465 -26.81968 -26.33379 -25.19032 -23.37787 -22.01117 -20.69847 -20.03346 -19.70011 -17.20332 -16.65736 -16.36280 -16.10587 -15.92753 -15.46133 -15.36495 -15.00568 -14.44533 -14.32874 -13.93030 -13.77383 -13.45632 -13.21282 -12.91894 -12.31994 -12.27811 -12.01833 -11.85440 -11.64795 -11.50471 -11.40710 -10.89093 -10.71273 -10.57734 -10.56095 -10.54076 -10.09581 -9.79361 -9.36687 -9.06747 -8.98599 -8.34640 -8.19857 -5.93499 -3.95653 2.79372 3.20014 3.34811 3.41425 3.45175 3.79121 3.81660 4.14650 4.26373 4.27383 4.50550 4.70460 4.82211 4.91596 5.10704 5.15679 5.16610 5.22246 5.35740 5.41981 5.42027 5.44230 5.51790 5.55961 5.73892 5.79038 5.84685 6.00651 6.40651 6.46386 6.66632 7.09438 7.38207 7.60215 7.76482 7.81018 7.96753 8.13599 8.32991 8.48994 9.12437 9.67555 11.17425 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.003127 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.719482 B = 8953.362018 C = 9619.337786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.078 3.922 12 H 0.098 0.902 13 N -0.807 5.807 14 C 0.482 3.518 15 O -0.553 6.553 16 N -0.732 5.732 17 C 0.118 3.882 18 C -0.142 4.142 19 C 0.096 3.904 20 F -0.188 7.188 21 C -0.157 4.157 22 C -0.142 4.142 23 C -0.155 4.155 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.035 0.965 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.333 0.667 30 H 0.348 0.652 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.882 -20.811 -10.296 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.037 4.037 12 H 0.116 0.884 13 N -0.335 5.335 14 C 0.268 3.732 15 O -0.431 6.431 16 N -0.385 5.385 17 C -0.006 4.006 18 C -0.180 4.180 19 C 0.077 3.923 20 F -0.169 7.169 21 C -0.195 4.195 22 C -0.179 4.179 23 C -0.193 4.193 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.237 0.763 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.639 -20.443 -9.734 23.896 hybrid contribution 1.076 0.260 -0.250 1.135 sum 8.715 -20.183 -9.984 24.145 Atomic orbital electron populations 1.69972 1.05952 1.26418 1.50889 1.24990 0.94806 0.99059 0.95486 0.86649 0.79909 0.83764 0.77979 1.20785 1.21257 1.19964 1.21287 0.92916 0.91341 1.50533 0.92981 1.19017 0.93555 0.89821 0.98197 1.21660 0.98847 0.92172 1.00696 1.21840 0.93532 0.93275 0.95088 0.88432 1.59004 1.26944 1.44237 1.03295 1.22777 0.82229 0.85715 0.82489 1.90651 1.61034 1.54303 1.37117 1.46146 1.46811 1.35011 1.10486 1.21205 0.93478 0.90325 0.95601 1.22228 0.99315 0.98915 0.97532 1.21758 0.85456 0.96138 0.88905 1.92862 1.58218 1.97188 1.68584 1.23596 0.99881 0.95208 1.00793 1.22855 0.99774 0.96290 0.98979 1.23560 1.03348 0.96961 0.95384 0.93099 0.96889 0.94651 0.92844 0.92840 0.85486 0.83806 0.76279 0.91628 0.91159 0.89733 0.89147 0.90093 0.88227 0.90533 0.89661 0.88176 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 10 C -0.10 -1.93 4.78 -26.73 -0.13 -2.06 16 11 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 12 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 13 N -0.81 -13.77 8.44 -5.65 -0.05 -13.82 16 14 C 0.48 7.70 7.07 -10.99 -0.08 7.62 16 15 O -0.55 -10.52 16.25 5.55 0.09 -10.43 16 16 N -0.73 -9.06 5.56 -60.29 -0.33 -9.39 16 17 C 0.12 1.33 5.48 -4.04 -0.02 1.31 16 18 C -0.14 -1.12 5.04 -26.73 -0.13 -1.26 16 19 C 0.10 0.79 1.61 -89.81 -0.14 0.64 16 20 F -0.19 -2.13 16.58 2.25 0.04 -2.09 16 21 C -0.16 -1.05 7.51 -25.92 -0.19 -1.25 16 22 C -0.14 -0.84 8.06 -25.92 -0.21 -1.05 16 23 C -0.15 -0.96 7.54 -25.92 -0.20 -1.16 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.33 4.92 9.06 -39.29 -0.36 4.56 16 30 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 31 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.54 7.98 -51.93 -0.41 0.12 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.53 7.99 -51.93 -0.41 0.12 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.10 0.47 8.10 -51.92 -0.42 0.05 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -33.36 343.80 -8.09 -41.45 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.86 Total: 7.56 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.87 Total: -9.00 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.35 Total: -49.45 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.36 -8.09 -41.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702449620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.120 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds