Wall clock time and date at job start Mon Mar 30 2020 05:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99767 * 2 1 4 4 H 1.48506 * 109.47116 * 270.00159 * 3 2 1 5 5 H 1.48503 * 109.47256 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00058 * 3 2 1 7 7 C 1.37870 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00078 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.47294 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.46830 * 54.99987 * 11 10 9 13 13 N 1.46902 * 109.46897 * 295.00075 * 11 10 9 14 14 C 1.50694 * 109.47025 * 175.00237 * 11 10 9 15 15 O 1.21288 * 120.00037 * 100.00236 * 14 11 10 16 16 N 1.34776 * 120.00228 * 279.99756 * 14 11 10 17 17 C 1.46496 * 120.00478 * 180.02562 * 16 14 11 18 18 C 1.52999 * 109.47580 * 180.02562 * 17 16 14 19 19 C 1.52995 * 109.47293 * 179.97438 * 18 17 16 20 20 F 1.39905 * 112.85050 * 309.66638 * 19 18 17 21 21 C 1.53781 * 113.69312 * 80.93486 * 19 18 17 22 22 C 1.53779 * 87.08092 * 139.99220 * 21 19 18 23 23 C 1.53777 * 87.08235 * 334.56833 * 22 21 19 24 24 H 0.97000 * 120.00671 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.47245 * 60.00476 * 9 7 2 26 26 H 1.08996 * 109.47176 * 299.99838 * 9 7 2 27 27 H 1.09003 * 109.47376 * 60.00154 * 10 9 7 28 28 H 1.08993 * 109.47752 * 300.00186 * 10 9 7 29 29 H 1.00902 * 110.99699 * 176.04145 * 13 11 10 30 30 H 1.00899 * 111.00144 * 300.00009 * 13 11 10 31 31 H 0.97003 * 119.99708 * 359.97438 * 16 14 11 32 32 H 1.09004 * 109.47234 * 59.99680 * 17 16 14 33 33 H 1.09004 * 109.47030 * 300.00489 * 17 16 14 34 34 H 1.09002 * 109.46403 * 59.99818 * 18 17 16 35 35 H 1.08995 * 109.46753 * 300.00300 * 18 17 16 36 36 H 1.08997 * 113.61414 * 254.54602 * 21 19 18 37 37 H 1.09005 * 113.60855 * 25.44101 * 21 19 18 38 38 H 1.09003 * 113.61115 * 220.02346 * 22 21 19 39 39 H 1.08995 * 113.61370 * 89.11749 * 22 21 19 40 40 H 1.09009 * 113.61922 * 270.88620 * 23 22 21 41 41 H 1.09003 * 113.61452 * 139.98026 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9871 0.0033 12 1 0.7875 -5.0077 -0.8377 13 7 0.7302 -5.1176 1.2595 14 6 2.4551 -6.1298 -0.1207 15 8 2.7880 -6.7526 0.8653 16 7 2.9567 -6.4598 -1.3274 17 6 3.9036 -7.5710 -1.4481 18 6 4.3154 -7.7335 -2.9126 19 6 5.3048 -8.8936 -3.0385 20 9 6.3644 -8.8051 -2.1291 21 6 4.6342 -10.2772 -3.0702 22 6 5.6613 -10.6633 -4.1475 23 6 5.7546 -9.1656 -4.4837 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8919 27 1 2.8728 -3.6038 0.8909 28 1 2.8714 -3.6047 -0.8889 29 1 0.1658 -5.9540 1.2583 30 1 1.3509 -5.1012 2.0548 31 1 2.6900 -5.9619 -2.1160 32 1 3.4323 -8.4897 -1.0986 33 1 4.7866 -7.3631 -0.8437 34 1 4.7868 -6.8148 -3.2615 35 1 3.4326 -7.9412 -3.5172 36 1 4.7441 -10.8370 -2.1414 37 1 3.6068 -10.2561 -3.4338 38 1 5.2429 -11.2664 -4.9534 39 1 6.5842 -11.0781 -3.7422 40 1 5.0336 -8.8407 -5.2339 41 1 6.7691 -8.8282 -4.6961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702449620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:22 Heat of formation + Delta-G solvation = -114.204094 kcal Electronic energy + Delta-G solvation = -20706.223969 eV Core-core repulsion = 17341.058855 eV Total energy + Delta-G solvation = -3365.165114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.75002 -41.03933 -39.09418 -36.92615 -36.24623 -34.80752 -32.12282 -31.89433 -28.30406 -26.92722 -26.39934 -24.80832 -22.82818 -22.32562 -21.20034 -20.49651 -18.69887 -18.07635 -17.52532 -17.11327 -16.92051 -16.54878 -16.41862 -16.32533 -15.90818 -15.31446 -14.99126 -14.83503 -14.81846 -14.26878 -13.95930 -13.77909 -13.49843 -13.40320 -12.99922 -12.79079 -12.60959 -12.51901 -12.26103 -12.18579 -11.87289 -11.78311 -11.66263 -11.28696 -11.15346 -11.11708 -10.96402 -10.48346 -10.18205 -9.62604 -8.13488 -6.23658 1.41824 1.43490 1.49287 1.54437 2.12747 2.45082 3.19552 3.22412 3.28725 3.52373 3.57976 3.67195 3.78912 3.89581 4.05858 4.08753 4.15260 4.32694 4.46491 4.67820 4.73881 4.74680 4.78529 4.83374 4.92858 4.96758 5.00921 5.03434 5.17060 5.25604 5.35531 5.48239 5.57783 5.85495 5.99420 6.09640 6.31196 6.44003 6.53987 6.95129 7.13710 7.44494 8.97720 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025090 B = 0.003127 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.719482 B = 8953.362018 C = 9619.337786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.083 4.083 11 C 0.086 3.914 12 H 0.115 0.885 13 N -0.819 5.819 14 C 0.486 3.514 15 O -0.586 6.586 16 N -0.714 5.714 17 C 0.119 3.881 18 C -0.132 4.132 19 C 0.077 3.923 20 F -0.212 7.212 21 C -0.156 4.156 22 C -0.140 4.140 23 C -0.147 4.147 24 H 0.262 0.738 25 H -0.003 1.003 26 H 0.005 0.995 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.347 0.653 30 H 0.344 0.656 31 H 0.417 0.583 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -21.093 -12.182 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.121 4.121 11 C -0.029 4.029 12 H 0.133 0.867 13 N -0.348 5.348 14 C 0.271 3.729 15 O -0.466 6.466 16 N -0.367 5.367 17 C -0.005 4.005 18 C -0.170 4.170 19 C 0.058 3.942 20 F -0.193 7.193 21 C -0.193 4.193 22 C -0.177 4.177 23 C -0.184 4.184 24 H 0.071 0.929 25 H 0.015 0.985 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.254 0.746 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.140 0.860 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.105 -20.739 -11.667 25.138 hybrid contribution 0.918 0.316 0.336 1.028 sum 9.023 -20.423 -11.331 25.038 Atomic orbital electron populations 1.70098 1.07599 1.27528 1.51759 1.25888 0.95700 1.02991 0.94990 0.85543 0.78575 0.78967 0.78513 1.19523 1.20954 1.19258 1.21740 0.93339 0.92810 1.50362 0.92722 1.18826 0.93854 0.91222 0.95858 1.21401 0.97751 0.92197 1.00744 1.21654 0.93730 0.91897 0.95667 0.86707 1.58986 1.27234 1.45283 1.03306 1.22448 0.82007 0.85327 0.83071 1.90644 1.62092 1.55439 1.38474 1.46013 1.45828 1.34925 1.09889 1.21238 0.91967 0.89465 0.97786 1.22221 1.00371 0.99180 0.95206 1.22143 0.85229 0.97015 0.89780 1.92813 1.59479 1.97330 1.69676 1.23655 1.01035 0.93987 1.00664 1.22852 0.99248 0.96475 0.99152 1.23588 1.03667 0.96902 0.94290 0.92905 0.98478 0.97647 0.94237 0.91297 0.83988 0.84242 0.74591 0.91874 0.93797 0.89386 0.86261 0.91301 0.86317 0.88758 0.90625 0.85953 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.44 0.28 -56.30 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.71 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.04 2.05 4.86 29.85 0.15 2.19 16 10 C -0.08 -3.32 4.78 30.60 0.15 -3.17 16 11 C 0.09 2.83 3.15 44.17 0.14 2.97 16 12 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 13 N -0.82 -27.90 8.44 -171.80 -1.45 -29.35 16 14 C 0.49 15.04 7.07 87.66 0.62 15.66 16 15 O -0.59 -22.15 16.25 -3.05 -0.05 -22.20 16 16 N -0.71 -16.40 5.56 -463.06 -2.57 -18.97 16 17 C 0.12 2.55 5.48 86.38 0.47 3.03 16 18 C -0.13 -1.78 5.04 30.59 0.15 -1.62 16 19 C 0.08 1.14 1.61 -10.27 -0.02 1.12 16 20 F -0.21 -4.81 16.58 44.97 0.75 -4.07 16 21 C -0.16 -1.80 7.51 31.12 0.23 -1.56 16 22 C -0.14 -1.38 8.06 31.12 0.25 -1.13 16 23 C -0.15 -1.48 7.54 31.12 0.23 -1.25 16 24 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 25 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 26 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.35 10.06 9.06 -89.69 -0.81 9.25 16 30 H 0.34 12.16 8.58 -89.69 -0.77 11.39 16 31 H 0.42 7.26 8.47 -92.71 -0.79 6.47 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.39 16 33 H 0.04 1.19 7.76 -2.38 -0.02 1.17 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.12 0.94 7.98 -2.39 -0.02 0.93 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.12 0.90 7.99 -2.38 -0.02 0.88 16 38 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.12 0.69 8.10 -2.38 -0.02 0.67 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.50 343.80 0.73 -71.77 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -1.33 Total: 26.53 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 3.07 Total: -13.89 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.74 Total: -104.63 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.75 Total: -4.07 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.50 0.73 -71.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702449620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.439 kcal (2) G-P(sol) polarization free energy of solvation -72.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds