Wall clock time and date at job start Mon Mar 30 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86789 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47247 * 300.00007 * 3 2 1 6 6 H 1.48501 * 109.47368 * 60.00285 * 3 2 1 7 7 C 1.37877 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47244 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47438 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46818 * 304.99765 * 11 10 9 13 13 N 1.46897 * 109.47027 * 64.99601 * 11 10 9 14 14 C 1.50693 * 109.47125 * 184.99708 * 11 10 9 15 15 O 1.21282 * 120.00160 * 259.99805 * 14 11 10 16 16 N 1.34782 * 120.00167 * 80.00047 * 14 11 10 17 17 C 1.46492 * 119.99960 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.47111 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47277 * 179.97438 * 18 17 16 20 20 F 1.39897 * 112.84885 * 53.80394 * 19 18 17 21 21 C 1.53778 * 113.61196 * 184.99528 * 19 18 17 22 22 C 1.53787 * 87.08035 * 140.06532 * 21 19 18 23 23 C 1.53778 * 113.68969 * 282.53293 * 19 18 17 24 24 H 0.97003 * 119.99957 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47377 * 60.00608 * 9 7 2 26 26 H 1.09005 * 109.47196 * 300.00280 * 9 7 2 27 27 H 1.09000 * 109.47402 * 59.99958 * 10 9 7 28 28 H 1.09005 * 109.46732 * 299.99927 * 10 9 7 29 29 H 1.00905 * 110.99910 * 296.04707 * 13 11 10 30 30 H 1.00896 * 111.00676 * 60.00243 * 13 11 10 31 31 H 0.96998 * 119.99338 * 359.97438 * 16 14 11 32 32 H 1.09002 * 109.47560 * 60.00056 * 17 16 14 33 33 H 1.09004 * 109.47532 * 299.99464 * 17 16 14 34 34 H 1.09001 * 109.47437 * 59.99710 * 18 17 16 35 35 H 1.09007 * 109.46863 * 299.99816 * 18 17 16 36 36 H 1.08998 * 113.61879 * 25.52015 * 21 19 18 37 37 H 1.08997 * 113.69304 * 254.62101 * 21 19 18 38 38 H 1.09004 * 113.61202 * 89.11582 * 22 21 19 39 39 H 1.08994 * 113.61447 * 220.02014 * 22 21 19 40 40 H 1.08993 * 113.61229 * 105.46192 * 23 19 18 41 41 H 1.09000 * 113.61263 * 334.55842 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 1 0.7877 -5.0073 0.8404 13 7 0.7287 -5.1181 -1.2566 14 6 2.4546 -6.1299 0.1226 15 8 2.7867 -6.7532 -0.8634 16 7 2.9571 -6.4594 1.3290 17 6 3.9049 -7.5700 1.4492 18 6 4.3166 -7.7329 2.9137 19 6 5.3060 -8.8932 3.0394 20 9 6.4055 -8.7646 2.1839 21 6 5.6907 -9.2201 4.4919 22 6 5.6215 -10.7038 4.0934 23 6 4.6426 -10.2794 2.9859 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5570 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.0240 -4.4000 -1.3329 30 1 1.3486 -5.1022 -2.0525 31 1 2.6918 -5.9607 2.1175 32 1 4.7874 -7.3616 0.8443 33 1 3.4340 -8.4890 1.1003 34 1 3.4340 -7.9414 3.5183 35 1 4.7875 -6.8139 3.2631 36 1 4.9343 -8.9279 5.2203 37 1 6.6921 -8.8877 4.7652 38 1 6.5644 -11.0987 3.7150 39 1 5.1702 -11.3398 4.8549 40 1 4.7982 -10.8018 2.0420 41 1 3.5996 -10.2768 3.3025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702449624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:25 Heat of formation + Delta-G solvation = -91.619139 kcal Electronic energy + Delta-G solvation = -20711.685315 eV Core-core repulsion = 17347.499559 eV Total energy + Delta-G solvation = -3364.185757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.97051 -39.61663 -38.47259 -35.69161 -34.96858 -32.85079 -31.18154 -29.87946 -26.91565 -26.31290 -25.15490 -23.54984 -22.00037 -20.74345 -20.02737 -19.66381 -17.36878 -16.56116 -16.33957 -16.12009 -15.85073 -15.39126 -15.04477 -14.67441 -14.46990 -14.29310 -13.96597 -13.84511 -13.26538 -13.07942 -12.94748 -12.78579 -12.23424 -12.17276 -11.82356 -11.66032 -11.55221 -11.36905 -11.08883 -10.93985 -10.67522 -10.56383 -10.51810 -9.99567 -9.89746 -9.27904 -9.19304 -8.97135 -8.44979 -8.17944 -6.09429 -4.12393 2.96190 3.21337 3.25686 3.33775 3.37949 3.83186 3.85654 4.18960 4.30043 4.31043 4.39143 4.75973 4.86307 5.11208 5.17963 5.20044 5.20288 5.25968 5.27015 5.39982 5.45198 5.48852 5.56942 5.59936 5.76285 5.79871 5.85325 6.04874 6.28822 6.50547 6.53853 6.87462 7.43875 7.51635 7.60968 7.71395 7.87973 7.91721 8.30678 8.48791 8.93927 9.52635 11.01543 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003123 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.843781 B = 8962.720773 C = 9619.266121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.525 3.475 15 O -0.538 6.538 16 N -0.736 5.736 17 C 0.121 3.879 18 C -0.142 4.142 19 C 0.097 3.903 20 F -0.188 7.188 21 C -0.155 4.155 22 C -0.142 4.142 23 C -0.157 4.157 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.354 0.646 30 H 0.346 0.654 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 -18.810 10.140 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.311 3.689 15 O -0.413 6.413 16 N -0.389 5.389 17 C -0.003 4.003 18 C -0.180 4.180 19 C 0.078 3.922 20 F -0.169 7.169 21 C -0.193 4.193 22 C -0.179 4.179 23 C -0.195 4.195 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.677 -19.867 9.656 23.385 hybrid contribution 0.840 2.233 0.167 2.392 sum 8.517 -17.634 9.823 21.908 Atomic orbital electron populations 1.69963 1.06020 1.26676 1.50579 1.25018 0.94875 0.99333 0.95141 0.86525 0.80122 0.83658 0.77655 1.19744 1.20938 1.20945 1.21226 0.93076 0.90896 1.50931 0.92658 1.19110 0.93724 0.91129 0.97360 1.22383 0.99863 0.93959 1.01513 1.21471 0.94666 0.92303 0.95597 0.88586 1.58742 1.18489 1.55863 1.03221 1.20906 0.81090 0.84439 0.82427 1.90638 1.60170 1.53433 1.37102 1.45969 1.47313 1.35390 1.10257 1.21173 0.93295 0.90293 0.95493 1.22226 0.99303 0.98868 0.97591 1.21752 0.84477 0.95990 0.90003 1.92859 1.55218 1.96903 1.71893 1.23556 1.03518 0.96870 0.95314 1.22859 1.00098 0.96336 0.98620 1.23590 1.00169 0.94981 1.00733 0.92935 0.96378 0.96329 0.92547 0.92680 0.83066 0.84123 0.76454 0.91211 0.91483 0.89125 0.89791 0.88206 0.90142 0.89681 0.90557 0.90036 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 10 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 11 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 12 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.55 8.94 -5.66 -0.05 -14.60 16 14 C 0.52 8.85 7.08 -10.99 -0.08 8.77 16 15 O -0.54 -10.86 16.25 5.56 0.09 -10.77 16 16 N -0.74 -9.48 5.56 -60.30 -0.33 -9.81 16 17 C 0.12 1.41 5.48 -4.04 -0.02 1.39 16 18 C -0.14 -1.16 5.01 -26.73 -0.13 -1.29 16 19 C 0.10 0.81 1.59 -89.81 -0.14 0.67 16 20 F -0.19 -2.16 16.71 2.25 0.04 -2.12 16 21 C -0.15 -0.99 7.54 -25.92 -0.20 -1.18 16 22 C -0.14 -0.87 8.06 -25.91 -0.21 -1.08 16 23 C -0.16 -1.10 7.39 -25.92 -0.19 -1.29 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.35 6.17 7.55 -39.29 -0.30 5.87 16 30 H 0.35 6.17 8.58 -39.29 -0.34 5.83 16 31 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 32 H 0.07 0.95 7.83 -51.93 -0.41 0.55 16 33 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.09 0.56 8.05 -51.93 -0.42 0.15 16 35 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.10 0.49 8.10 -51.93 -0.42 0.06 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.23 341.89 -8.02 -40.25 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.76 Total: 9.43 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -1.86 Total: -8.51 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.35 Total: -49.71 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -8.02 -40.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702449624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.368 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds