Wall clock time and date at job start Mon Mar 30 2020 05:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86789 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47247 * 300.00007 * 3 2 1 6 6 H 1.48501 * 109.47368 * 60.00285 * 3 2 1 7 7 C 1.37877 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99931 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47244 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47438 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46818 * 304.99765 * 11 10 9 13 13 N 1.46897 * 109.47027 * 64.99601 * 11 10 9 14 14 C 1.50693 * 109.47125 * 184.99708 * 11 10 9 15 15 O 1.21282 * 120.00160 * 259.99805 * 14 11 10 16 16 N 1.34782 * 120.00167 * 80.00047 * 14 11 10 17 17 C 1.46492 * 119.99960 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.47111 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47277 * 179.97438 * 18 17 16 20 20 F 1.39897 * 112.84885 * 53.80394 * 19 18 17 21 21 C 1.53778 * 113.61196 * 184.99528 * 19 18 17 22 22 C 1.53787 * 87.08035 * 140.06532 * 21 19 18 23 23 C 1.53778 * 113.68969 * 282.53293 * 19 18 17 24 24 H 0.97003 * 119.99957 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47377 * 60.00608 * 9 7 2 26 26 H 1.09005 * 109.47196 * 300.00280 * 9 7 2 27 27 H 1.09000 * 109.47402 * 59.99958 * 10 9 7 28 28 H 1.09005 * 109.46732 * 299.99927 * 10 9 7 29 29 H 1.00905 * 110.99910 * 296.04707 * 13 11 10 30 30 H 1.00896 * 111.00676 * 60.00243 * 13 11 10 31 31 H 0.96998 * 119.99338 * 359.97438 * 16 14 11 32 32 H 1.09002 * 109.47560 * 60.00056 * 17 16 14 33 33 H 1.09004 * 109.47532 * 299.99464 * 17 16 14 34 34 H 1.09001 * 109.47437 * 59.99710 * 18 17 16 35 35 H 1.09007 * 109.46863 * 299.99816 * 18 17 16 36 36 H 1.08998 * 113.61879 * 25.52015 * 21 19 18 37 37 H 1.08997 * 113.69304 * 254.62101 * 21 19 18 38 38 H 1.09004 * 113.61202 * 89.11582 * 22 21 19 39 39 H 1.08994 * 113.61447 * 220.02014 * 22 21 19 40 40 H 1.08993 * 113.61229 * 105.46192 * 23 19 18 41 41 H 1.09000 * 113.61263 * 334.55842 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 1 0.7877 -5.0073 0.8404 13 7 0.7287 -5.1181 -1.2566 14 6 2.4546 -6.1299 0.1226 15 8 2.7867 -6.7532 -0.8634 16 7 2.9571 -6.4594 1.3290 17 6 3.9049 -7.5700 1.4492 18 6 4.3166 -7.7329 2.9137 19 6 5.3060 -8.8932 3.0394 20 9 6.4055 -8.7646 2.1839 21 6 5.6907 -9.2201 4.4919 22 6 5.6215 -10.7038 4.0934 23 6 4.6426 -10.2794 2.9859 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5570 0.8897 27 1 2.8718 -3.6045 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.0240 -4.4000 -1.3329 30 1 1.3486 -5.1022 -2.0525 31 1 2.6918 -5.9607 2.1175 32 1 4.7874 -7.3616 0.8443 33 1 3.4340 -8.4890 1.1003 34 1 3.4340 -7.9414 3.5183 35 1 4.7875 -6.8139 3.2631 36 1 4.9343 -8.9279 5.2203 37 1 6.6921 -8.8877 4.7652 38 1 6.5644 -11.0987 3.7150 39 1 5.1702 -11.3398 4.8549 40 1 4.7982 -10.8018 2.0420 41 1 3.5996 -10.2768 3.3025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702449624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:25 Heat of formation + Delta-G solvation = -114.012850 kcal Electronic energy + Delta-G solvation = -20712.656379 eV Core-core repulsion = 17347.499559 eV Total energy + Delta-G solvation = -3365.156821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.72719 -40.93573 -39.07812 -37.17623 -36.18614 -34.83811 -32.08737 -31.68268 -28.35941 -26.92208 -26.41039 -24.94750 -22.82975 -22.36277 -21.17930 -20.47468 -18.90701 -18.12133 -17.44084 -16.96280 -16.68665 -16.57182 -16.33340 -16.00292 -15.86853 -15.37985 -15.19834 -14.92871 -14.57742 -14.48047 -14.00567 -13.84815 -13.49780 -13.40641 -12.97624 -12.96242 -12.71947 -12.54764 -12.47690 -12.18075 -11.85439 -11.81453 -11.74040 -11.29263 -11.20021 -11.10088 -10.70369 -10.56626 -10.14066 -9.64973 -8.21996 -6.32117 1.38367 1.40233 1.51831 1.60137 2.09184 2.39842 3.11777 3.24245 3.30637 3.55842 3.65105 3.75542 3.80522 3.88008 4.08315 4.11512 4.16874 4.25447 4.49463 4.66415 4.69605 4.75967 4.76602 4.83850 4.85555 4.97788 5.02687 5.05297 5.08800 5.19431 5.39758 5.46802 5.50307 5.65793 5.80743 6.06878 6.21327 6.46961 6.53088 6.83598 7.22828 7.37079 8.88979 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025337 B = 0.003123 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.843781 B = 8962.720773 C = 9619.266121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.121 4.121 11 C 0.081 3.919 12 H 0.114 0.886 13 N -0.831 5.831 14 C 0.524 3.476 15 O -0.575 6.575 16 N -0.717 5.717 17 C 0.122 3.878 18 C -0.132 4.132 19 C 0.078 3.922 20 F -0.212 7.212 21 C -0.146 4.146 22 C -0.140 4.140 23 C -0.157 4.157 24 H 0.264 0.736 25 H 0.002 0.998 26 H 0.005 0.995 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.416 0.584 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.096 -19.014 11.978 23.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.007 4.007 10 C -0.161 4.161 11 C -0.034 4.034 12 H 0.132 0.868 13 N -0.362 5.362 14 C 0.311 3.689 15 O -0.454 6.454 16 N -0.370 5.370 17 C -0.002 4.002 18 C -0.169 4.169 19 C 0.059 3.941 20 F -0.193 7.193 21 C -0.184 4.184 22 C -0.177 4.177 23 C -0.195 4.195 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.023 0.977 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.996 -20.077 11.540 24.499 hybrid contribution 0.737 2.266 -0.402 2.416 sum 8.733 -17.812 11.138 22.750 Atomic orbital electron populations 1.70067 1.07448 1.27712 1.51417 1.25858 0.95740 1.02950 0.94763 0.85490 0.78988 0.79300 0.77822 1.19081 1.20616 1.20147 1.21653 0.93328 0.92517 1.50753 0.92822 1.18974 0.94014 0.91900 0.95836 1.22140 0.98804 0.93798 1.01364 1.21422 0.94764 0.91127 0.96062 0.86819 1.58762 1.18429 1.55650 1.03383 1.20800 0.80945 0.84138 0.83060 1.90626 1.61450 1.54744 1.38595 1.45841 1.46311 1.35298 1.09575 1.21225 0.91822 0.89357 0.97779 1.22216 1.00363 0.99188 0.95178 1.22130 0.84117 0.96756 0.91098 1.92811 1.56526 1.97046 1.72882 1.23579 1.04011 0.96670 0.94116 1.22855 0.99588 0.96620 0.98643 1.23652 1.01304 0.93896 1.00602 0.92709 0.97956 0.97678 0.91429 0.94025 0.83186 0.84431 0.74685 0.93678 0.91849 0.86273 0.89375 0.85968 0.90530 0.90594 0.88786 0.91312 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 2 C 0.01 0.30 5.46 84.65 0.46 0.76 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.46 4.74 29.85 0.14 1.60 16 10 C -0.12 -4.71 4.78 30.60 0.15 -4.57 16 11 C 0.08 2.72 3.21 44.17 0.14 2.86 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.83 -28.94 8.94 -171.81 -1.54 -30.48 16 14 C 0.52 17.21 7.08 87.65 0.62 17.83 16 15 O -0.58 -23.21 16.25 -3.04 -0.05 -23.26 16 16 N -0.72 -17.29 5.56 -463.07 -2.57 -19.86 16 17 C 0.12 2.70 5.48 86.38 0.47 3.18 16 18 C -0.13 -1.85 5.01 30.60 0.15 -1.69 16 19 C 0.08 1.18 1.59 -10.27 -0.02 1.17 16 20 F -0.21 -4.86 16.71 44.97 0.75 -4.11 16 21 C -0.15 -1.51 7.54 31.12 0.23 -1.28 16 22 C -0.14 -1.44 8.06 31.12 0.25 -1.18 16 23 C -0.16 -1.93 7.39 31.12 0.23 -1.70 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 25 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 26 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.35 12.35 7.55 -89.69 -0.68 11.68 16 30 H 0.34 12.33 8.58 -89.70 -0.77 11.56 16 31 H 0.42 7.58 8.47 -92.71 -0.79 6.80 16 32 H 0.04 1.24 7.83 -2.39 -0.02 1.22 16 33 H 0.06 1.48 8.05 -2.38 -0.02 1.46 16 34 H 0.12 1.02 8.05 -2.39 -0.02 1.00 16 35 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.12 0.72 8.10 -2.39 -0.02 0.70 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.12 1.01 8.04 -2.39 -0.02 0.99 16 Total: -1.00 -69.27 341.89 0.78 -68.49 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -1.19 Total: 30.32 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 3.07 Total: -12.65 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.82 Total: -104.12 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.75 Total: -4.11 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -69.27 0.78 -68.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702449624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.526 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds