Wall clock time and date at job start Mon Mar 30 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99920 * 2 1 4 4 C 1.53006 * 109.47212 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47088 * 64.99749 * 4 3 2 6 6 C 1.46493 * 119.99749 * 90.00146 * 5 4 3 7 7 C 1.50701 * 109.47082 * 83.80402 * 6 5 4 8 8 H 1.08001 * 119.99976 * 4.44041 * 7 6 5 9 9 C 1.37882 * 120.00332 * 184.43460 * 7 6 5 10 10 N 1.31515 * 120.00062 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99709 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47159 * 89.99834 * 11 9 7 13 13 H 1.48499 * 109.47144 * 209.99583 * 11 9 7 14 14 H 1.48506 * 109.47125 * 329.99608 * 11 9 7 15 15 C 1.34775 * 119.99992 * 270.00705 * 5 4 3 16 16 O 1.21282 * 120.00432 * 5.39110 * 15 5 4 17 17 C 1.50705 * 119.99781 * 185.39611 * 15 5 4 18 18 H 1.08998 * 109.86470 * 324.96555 * 17 15 5 19 19 O 1.43746 * 109.87829 * 203.95989 * 17 15 5 20 20 C 1.44573 * 106.86619 * 214.17366 * 19 17 15 21 21 C 1.54988 * 103.59072 * 39.87707 * 20 19 17 22 22 C 1.54105 * 109.87870 * 85.97170 * 17 15 5 23 23 H 1.08999 * 110.48487 * 240.13161 * 22 17 15 24 24 N 1.46904 * 110.48733 * 2.77621 * 22 17 15 25 25 H 1.08999 * 109.47170 * 299.99735 * 1 2 3 26 26 H 1.08995 * 109.47561 * 59.99764 * 1 2 3 27 27 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47379 * 300.00382 * 3 2 1 29 29 H 1.09001 * 109.47118 * 60.00281 * 3 2 1 30 30 H 1.08993 * 109.47329 * 185.00018 * 4 3 2 31 31 H 1.09003 * 109.46506 * 305.00407 * 4 3 2 32 32 H 1.08999 * 109.47282 * 203.80601 * 6 5 4 33 33 H 1.09007 * 109.47678 * 323.80840 * 6 5 4 34 34 H 0.97002 * 119.99714 * 180.02562 * 10 9 7 35 35 H 1.09003 * 110.50320 * 281.37261 * 20 19 17 36 36 H 1.09002 * 110.77157 * 158.51194 * 20 19 17 37 37 H 1.09007 * 110.91106 * 204.85948 * 21 20 19 38 38 H 1.08998 * 110.93625 * 81.26888 * 21 20 19 39 39 H 1.00899 * 110.99558 * 185.33812 * 24 22 17 40 40 H 1.00897 * 110.99851 * 309.29663 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2864 1.4006 -2.4148 7 6 5.7019 1.9060 -2.3059 8 1 6.3327 1.5746 -1.4943 9 6 6.1919 2.7913 -3.2426 10 7 7.4274 3.2319 -3.1478 11 14 5.1007 3.3648 -4.6461 12 1 4.3688 4.5898 -4.2353 13 1 5.9393 3.6643 -5.8345 14 1 4.1266 2.2961 -4.9843 15 6 4.0948 -0.7756 -1.3356 16 8 3.7450 -1.4740 -0.4078 17 6 4.6627 -1.4060 -2.5811 18 1 4.3583 -0.8339 -3.4575 19 8 4.1996 -2.7619 -2.6973 20 6 5.2727 -3.5215 -3.2986 21 6 6.5454 -2.9534 -2.6208 22 6 6.2005 -1.4497 -2.4918 23 1 6.6463 -0.8844 -3.3102 24 7 6.6554 -0.9269 -1.1965 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6885 1.8464 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 3.9785 2.1764 0.0889 31 1 3.8514 0.5681 0.8409 32 1 4.1800 0.8111 -3.3255 33 1 3.6000 2.2468 -2.4475 34 1 7.7719 3.8550 -3.8066 35 1 5.3032 -3.3528 -4.3751 36 1 5.1634 -4.5840 -3.0808 37 1 7.4210 -3.0987 -3.2535 38 1 6.6978 -3.4030 -1.6396 39 1 7.6623 -0.8708 -1.1628 40 1 6.2364 -0.0301 -1.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703162720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:01 Heat of formation + Delta-G solvation = -106.632845 kcal Electronic energy + Delta-G solvation = -23038.048228 eV Core-core repulsion = 19660.838639 eV Total energy + Delta-G solvation = -3377.209589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97701 -38.12778 -37.04822 -35.02792 -33.64510 -32.66245 -30.56058 -29.56888 -27.97373 -27.30839 -25.91197 -23.27263 -22.71902 -21.79502 -20.56801 -18.23657 -17.41638 -16.93985 -16.26118 -16.02281 -15.74289 -15.32875 -14.99332 -14.50724 -14.39559 -14.15640 -14.14363 -13.72859 -13.07847 -12.90307 -12.45286 -12.18816 -12.04300 -11.70102 -11.57482 -11.50622 -11.21213 -11.04535 -11.03238 -10.81239 -10.62781 -10.60440 -10.32593 -9.80712 -9.48376 -9.32158 -8.88466 -8.59223 -8.05921 -7.66648 -6.34921 -4.37932 3.09041 3.18017 3.19890 3.44807 3.68227 4.15656 4.19574 4.51419 4.87885 4.96103 4.98949 5.19344 5.37959 5.43176 5.45781 5.47150 5.62604 5.65443 5.70000 5.75166 5.84921 5.91992 5.96200 6.00087 6.10182 6.12325 6.38831 6.41183 6.44066 6.63914 7.11770 7.28695 7.40476 7.57873 7.75572 8.04198 8.12446 8.39110 8.68173 9.13490 9.26483 10.76176 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.009694 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.067311 B = 2887.692712 C = 4353.623764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.043 3.957 4 C 0.125 3.875 5 N -0.598 5.598 6 C 0.203 3.797 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.886 5.886 11 Si 0.871 3.129 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.536 3.464 16 O -0.517 6.517 17 C 0.064 3.936 18 H 0.088 0.912 19 O -0.353 6.353 20 C 0.047 3.953 21 C -0.150 4.150 22 C 0.084 3.916 23 H 0.064 0.936 24 N -0.842 5.842 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.267 0.733 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.337 0.663 40 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 -5.086 0.053 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.035 4.035 4 C 0.002 3.998 5 N -0.332 5.332 6 C 0.082 3.918 7 C -0.586 4.586 8 H 0.101 0.899 9 C -0.125 4.125 10 N -0.523 5.523 11 Si 0.698 3.302 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.189 1.189 15 C 0.322 3.678 16 O -0.392 6.392 17 C 0.003 3.997 18 H 0.105 0.895 19 O -0.271 6.271 20 C -0.030 4.030 21 C -0.188 4.188 22 C -0.029 4.029 23 H 0.081 0.919 24 N -0.379 5.379 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.560 -6.216 0.844 9.076 hybrid contribution -0.009 1.809 -1.650 2.448 sum -6.568 -4.407 -0.806 7.951 Atomic orbital electron populations 1.22667 0.82666 1.02159 0.99027 1.88179 1.18070 1.26972 1.95108 1.23068 0.95606 0.85214 0.99582 1.21321 0.90917 0.99569 0.88028 1.47777 1.66570 1.05530 1.13372 1.19864 0.97061 0.90753 0.84148 1.21421 0.96083 1.27849 1.13270 0.89897 1.24873 0.94897 0.95303 0.97444 1.69880 1.14877 1.31666 1.35878 0.86923 0.80988 0.79958 0.82379 1.19842 1.20896 1.18922 1.19715 0.77789 0.82008 0.88310 1.90620 1.47906 1.61435 1.39233 1.22831 0.94422 0.84919 0.97562 0.89460 1.88968 1.37019 1.18761 1.82371 1.23528 0.86260 0.96681 0.96555 1.23260 0.97891 0.95430 1.02191 1.22368 0.92374 0.95057 0.93091 0.91858 1.59168 1.12752 1.36180 1.29810 0.94800 0.94815 0.90152 0.93545 0.93213 0.88553 0.89883 0.94937 0.95382 0.92250 0.92425 0.89083 0.90646 0.89426 0.85123 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.74 9.27 -48.50 -0.45 -7.19 16 3 C 0.04 0.71 6.28 37.16 0.23 0.94 16 4 C 0.13 2.29 5.86 -4.04 -0.02 2.26 16 5 N -0.60 -12.34 1.82 -175.05 -0.32 -12.65 16 6 C 0.20 4.35 4.10 -5.20 -0.02 4.33 16 7 C -0.55 -13.17 9.23 -34.44 -0.32 -13.49 16 8 H 0.08 2.15 5.94 -52.49 -0.31 1.84 16 9 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.89 -24.03 13.96 55.43 0.77 -23.25 16 11 Si 0.87 19.01 27.38 -169.99 -4.65 14.35 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 14 H -0.26 -5.54 6.67 56.52 0.38 -5.16 16 15 C 0.54 11.82 4.80 -10.98 -0.05 11.77 16 16 O -0.52 -12.84 15.25 -20.86 -0.32 -13.16 16 17 C 0.06 1.29 3.20 -27.30 -0.09 1.21 16 18 H 0.09 1.73 5.94 -51.93 -0.31 1.42 16 19 O -0.35 -7.03 10.86 -53.49 -0.58 -7.61 16 20 C 0.05 0.70 7.72 38.21 0.29 1.00 16 21 C -0.15 -2.29 6.88 -24.73 -0.17 -2.46 16 22 C 0.08 1.56 4.18 -66.18 -0.28 1.28 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 N -0.84 -16.51 8.50 -3.37 -0.03 -16.53 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.63 8.07 -51.93 -0.42 1.22 16 31 H 0.08 1.59 7.50 -51.93 -0.39 1.21 16 32 H 0.03 0.70 5.06 -51.93 -0.26 0.44 16 33 H 0.03 0.58 7.30 -51.93 -0.38 0.21 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 39 H 0.34 6.04 9.08 -39.29 -0.36 5.68 16 40 H 0.36 7.82 3.85 -39.29 -0.15 7.66 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -30.60 319.06 -6.14 -36.74 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -5.96 Total: 14.22 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 0.59 Total: 10.28 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.43 Total: -52.44 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.35 Total: -27.96 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.65 Total: 14.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.60 -6.14 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703162720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.892 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds