Wall clock time and date at job start Mon Mar 30 2020 05:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99920 * 2 1 4 4 C 1.53006 * 109.47212 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47088 * 64.99749 * 4 3 2 6 6 C 1.46493 * 119.99749 * 90.00146 * 5 4 3 7 7 C 1.50701 * 109.47082 * 83.80402 * 6 5 4 8 8 H 1.08001 * 119.99976 * 4.44041 * 7 6 5 9 9 C 1.37882 * 120.00332 * 184.43460 * 7 6 5 10 10 N 1.31515 * 120.00062 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99709 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47159 * 89.99834 * 11 9 7 13 13 H 1.48499 * 109.47144 * 209.99583 * 11 9 7 14 14 H 1.48506 * 109.47125 * 329.99608 * 11 9 7 15 15 C 1.34775 * 119.99992 * 270.00705 * 5 4 3 16 16 O 1.21282 * 120.00432 * 5.39110 * 15 5 4 17 17 C 1.50705 * 119.99781 * 185.39611 * 15 5 4 18 18 H 1.08998 * 109.86470 * 324.96555 * 17 15 5 19 19 O 1.43746 * 109.87829 * 203.95989 * 17 15 5 20 20 C 1.44573 * 106.86619 * 214.17366 * 19 17 15 21 21 C 1.54988 * 103.59072 * 39.87707 * 20 19 17 22 22 C 1.54105 * 109.87870 * 85.97170 * 17 15 5 23 23 H 1.08999 * 110.48487 * 240.13161 * 22 17 15 24 24 N 1.46904 * 110.48733 * 2.77621 * 22 17 15 25 25 H 1.08999 * 109.47170 * 299.99735 * 1 2 3 26 26 H 1.08995 * 109.47561 * 59.99764 * 1 2 3 27 27 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47379 * 300.00382 * 3 2 1 29 29 H 1.09001 * 109.47118 * 60.00281 * 3 2 1 30 30 H 1.08993 * 109.47329 * 185.00018 * 4 3 2 31 31 H 1.09003 * 109.46506 * 305.00407 * 4 3 2 32 32 H 1.08999 * 109.47282 * 203.80601 * 6 5 4 33 33 H 1.09007 * 109.47678 * 323.80840 * 6 5 4 34 34 H 0.97002 * 119.99714 * 180.02562 * 10 9 7 35 35 H 1.09003 * 110.50320 * 281.37261 * 20 19 17 36 36 H 1.09002 * 110.77157 * 158.51194 * 20 19 17 37 37 H 1.09007 * 110.91106 * 204.85948 * 21 20 19 38 38 H 1.08998 * 110.93625 * 81.26888 * 21 20 19 39 39 H 1.00899 * 110.99558 * 185.33812 * 24 22 17 40 40 H 1.00897 * 110.99851 * 309.29663 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2864 1.4006 -2.4148 7 6 5.7019 1.9060 -2.3059 8 1 6.3327 1.5746 -1.4943 9 6 6.1919 2.7913 -3.2426 10 7 7.4274 3.2319 -3.1478 11 14 5.1007 3.3648 -4.6461 12 1 4.3688 4.5898 -4.2353 13 1 5.9393 3.6643 -5.8345 14 1 4.1266 2.2961 -4.9843 15 6 4.0948 -0.7756 -1.3356 16 8 3.7450 -1.4740 -0.4078 17 6 4.6627 -1.4060 -2.5811 18 1 4.3583 -0.8339 -3.4575 19 8 4.1996 -2.7619 -2.6973 20 6 5.2727 -3.5215 -3.2986 21 6 6.5454 -2.9534 -2.6208 22 6 6.2005 -1.4497 -2.4918 23 1 6.6463 -0.8844 -3.3102 24 7 6.6554 -0.9269 -1.1965 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.6885 1.8464 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 3.9785 2.1764 0.0889 31 1 3.8514 0.5681 0.8409 32 1 4.1800 0.8111 -3.3255 33 1 3.6000 2.2468 -2.4475 34 1 7.7719 3.8550 -3.8066 35 1 5.3032 -3.3528 -4.3751 36 1 5.1634 -4.5840 -3.0808 37 1 7.4210 -3.0987 -3.2535 38 1 6.6978 -3.4030 -1.6396 39 1 7.6623 -0.8708 -1.1628 40 1 6.2364 -0.0301 -1.0012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703162720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:00 Heat of formation + Delta-G solvation = -128.652075 kcal Electronic energy + Delta-G solvation = -23039.003054 eV Core-core repulsion = 19660.838639 eV Total energy + Delta-G solvation = -3378.164415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.52978 -39.56640 -38.42634 -36.75352 -35.13720 -34.53239 -31.99357 -30.96154 -29.70675 -28.80688 -27.09855 -24.66842 -24.47561 -23.15761 -22.01698 -19.84293 -19.24648 -18.51109 -17.72239 -17.50540 -17.12836 -16.63026 -16.51128 -16.05910 -15.85682 -15.75199 -15.54550 -15.11260 -14.72656 -14.49240 -14.11939 -13.73895 -13.43062 -13.13525 -13.06941 -12.96923 -12.64266 -12.61744 -12.45995 -12.27552 -12.01362 -11.96753 -11.91655 -11.64834 -10.98667 -10.79648 -10.54882 -10.24389 -9.61919 -9.34026 -8.28031 -6.34488 1.38335 1.43016 1.49433 1.82184 2.11406 2.34169 2.98707 3.05441 3.10223 3.43589 3.58020 3.73582 4.00410 4.18132 4.21003 4.26450 4.27810 4.42456 4.51692 4.53503 4.55860 4.64737 4.65418 4.76339 4.79977 4.83525 4.86402 4.87192 5.01302 5.14638 5.43255 5.67348 5.86331 6.16791 6.24480 6.37690 6.48492 6.67101 6.76426 7.29222 7.49384 8.85362 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.009694 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.067311 B = 2887.692712 C = 4353.623764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.209 3.791 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.031 3.969 10 N -0.931 5.931 11 Si 0.927 3.073 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.247 1.247 15 C 0.532 3.468 16 O -0.552 6.552 17 C 0.062 3.938 18 H 0.090 0.910 19 O -0.379 6.379 20 C 0.042 3.958 21 C -0.140 4.140 22 C 0.080 3.920 23 H 0.057 0.943 24 N -0.849 5.849 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.343 0.657 40 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 -5.287 -1.033 9.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.329 5.329 6 C 0.087 3.913 7 C -0.575 4.575 8 H 0.075 0.925 9 C -0.169 4.169 10 N -0.570 5.570 11 Si 0.751 3.249 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.171 1.171 15 C 0.319 3.681 16 O -0.429 6.429 17 C 0.000 4.000 18 H 0.107 0.893 19 O -0.298 6.298 20 C -0.034 4.034 21 C -0.178 4.178 22 C -0.033 4.033 23 H 0.075 0.925 24 N -0.385 5.385 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.840 -6.424 -0.242 10.139 hybrid contribution 0.410 1.827 -1.242 2.247 sum -7.430 -4.598 -1.483 8.862 Atomic orbital electron populations 1.22842 0.80497 1.02952 1.00602 1.88125 1.20603 1.28178 1.95443 1.23036 0.93672 0.84958 1.01310 1.21493 0.92983 0.99401 0.86545 1.47814 1.65999 1.05255 1.13864 1.19756 0.95653 0.91203 0.84644 1.21519 0.96966 1.26952 1.12040 0.92501 1.25567 0.95884 0.95593 0.99871 1.70009 1.16838 1.32998 1.37163 0.86014 0.79552 0.80082 0.79207 1.19155 1.21402 1.17057 1.20092 0.77205 0.82236 0.88566 1.90589 1.49598 1.62150 1.40598 1.22838 0.95194 0.85406 0.96546 0.89290 1.88939 1.39067 1.18734 1.83052 1.23868 0.84518 0.97375 0.97665 1.23238 0.99460 0.92661 1.02469 1.22469 0.91470 0.97151 0.92160 0.92485 1.59210 1.13205 1.35351 1.30744 0.92592 0.93750 0.89888 0.92894 0.90193 0.87597 0.91477 0.94482 0.93899 0.92383 0.89967 0.86716 0.87565 0.90445 0.84447 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -14.50 9.27 -136.29 -1.26 -15.76 16 3 C 0.05 1.47 6.28 71.98 0.45 1.92 16 4 C 0.12 4.28 5.86 86.38 0.51 4.79 16 5 N -0.60 -24.35 1.82 -826.14 -1.51 -25.85 16 6 C 0.21 8.69 4.10 85.63 0.35 9.04 16 7 C -0.54 -25.68 9.23 25.60 0.24 -25.44 16 8 H 0.06 3.01 5.94 -2.91 -0.02 2.99 16 9 C 0.03 1.55 5.47 84.66 0.46 2.01 16 10 N -0.93 -50.96 13.96 21.45 0.30 -50.66 16 11 Si 0.93 38.00 27.38 68.60 1.88 39.88 16 12 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 13 H -0.29 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.25 -9.34 6.67 99.48 0.66 -8.68 16 15 C 0.53 23.48 4.80 87.66 0.42 23.90 16 16 O -0.55 -27.73 15.25 22.22 0.34 -27.39 16 17 C 0.06 2.45 3.20 30.22 0.10 2.54 16 18 H 0.09 3.44 5.94 -2.39 -0.01 3.43 16 19 O -0.38 -14.68 10.86 -131.52 -1.43 -16.11 16 20 C 0.04 1.15 7.72 72.66 0.56 1.71 16 21 C -0.14 -4.04 6.88 31.89 0.22 -3.82 16 22 C 0.08 2.92 4.18 45.91 0.19 3.11 16 23 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 24 N -0.85 -33.65 8.50 -164.57 -1.40 -35.05 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 3.53 8.07 -2.39 -0.02 3.52 16 31 H 0.07 2.63 7.50 -2.39 -0.02 2.61 16 32 H 0.04 1.53 5.06 -2.39 -0.01 1.52 16 33 H 0.04 1.68 7.30 -2.38 -0.02 1.66 16 34 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.11 2.38 8.14 -2.38 -0.02 2.37 16 38 H 0.08 2.40 8.06 -2.39 -0.02 2.38 16 39 H 0.34 12.48 9.08 -89.69 -0.81 11.66 16 40 H 0.35 15.45 3.85 -89.70 -0.35 15.11 16 Total: -1.00 -66.08 319.06 1.52 -64.56 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -0.14 Total: 44.67 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 4.75 Total: 21.72 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -2.61 Total: -111.57 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -2.35 Total: -59.26 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.88 Total: 39.88 kcal Total: -66.08 1.52 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703162720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.094 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds