Wall clock time and date at job start Mon Mar 30 2020 04:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00114 * 2 1 4 4 C 1.52997 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47678 * 185.00145 * 4 3 2 6 6 C 1.53001 * 109.47207 * 305.00197 * 4 3 2 7 7 O 1.45202 * 109.47108 * 65.00378 * 4 3 2 8 8 C 1.34639 * 117.00234 * 149.99982 * 7 4 3 9 9 O 1.21513 * 120.00012 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00278 * 179.97438 * 8 7 4 11 11 C 1.46965 * 120.59294 * 359.72536 * 10 8 7 12 12 C 1.53808 * 108.40330 * 124.75288 * 11 10 8 13 13 N 1.46971 * 108.57742 * 49.63286 * 12 11 10 14 14 C 1.36939 * 120.58935 * 124.62669 * 13 12 11 15 15 H 1.08003 * 119.99738 * 208.18257 * 14 13 12 16 16 C 1.38809 * 120.00197 * 28.18558 * 14 13 12 17 17 N 1.31618 * 120.00238 * 17.55310 * 16 14 13 18 18 Si 1.86805 * 119.99990 * 197.56006 * 16 14 13 19 19 H 1.48492 * 109.47175 * 89.99860 * 18 16 14 20 20 H 1.48502 * 109.46745 * 209.99702 * 18 16 14 21 21 H 1.48492 * 109.46824 * 329.99768 * 18 16 14 22 22 C 1.46959 * 118.81408 * 304.65328 * 13 12 11 23 23 C 1.46965 * 120.59771 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.46945 * 59.99970 * 1 2 3 25 25 H 1.08992 * 109.47330 * 299.99972 * 1 2 3 26 26 H 1.08998 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47359 * 300.00223 * 3 2 1 28 28 H 1.09001 * 109.46813 * 60.00054 * 3 2 1 29 29 H 1.09002 * 109.46908 * 179.97438 * 6 4 3 30 30 H 1.08992 * 109.47403 * 299.99650 * 6 4 3 31 31 H 1.09000 * 109.47025 * 60.00200 * 6 4 3 32 32 H 1.09000 * 109.61041 * 244.54165 * 11 10 8 33 33 H 1.08997 * 109.61079 * 5.04722 * 11 10 8 34 34 H 1.09008 * 109.74363 * 289.85601 * 12 11 10 35 35 H 1.08998 * 109.53680 * 169.30257 * 12 11 10 36 36 H 0.96995 * 120.00416 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.61124 * 295.47687 * 22 13 12 38 38 H 1.09000 * 109.74983 * 175.04801 * 22 13 12 39 39 H 1.08998 * 109.60762 * 354.95303 * 23 10 8 40 40 H 1.08997 * 109.61219 * 115.29133 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9786 2.1764 0.0902 6 6 3.9780 0.3197 1.1826 7 8 3.9727 0.5694 -1.2398 8 6 5.1877 0.9209 -1.7013 9 8 5.8644 1.7195 -1.0842 10 7 5.6539 0.3863 -2.8473 11 6 4.8496 -0.5861 -3.6005 12 6 4.6868 -0.0702 -5.0403 13 7 6.0112 0.3043 -5.5559 14 6 6.4851 -0.2396 -6.7199 15 1 7.5490 -0.3471 -6.8717 16 6 5.5982 -0.6526 -7.7046 17 7 4.3540 -0.2237 -7.6916 18 14 6.1706 -1.8174 -9.0482 19 1 5.9533 -3.2204 -8.6127 20 1 5.3977 -1.5590 -10.2896 21 1 7.6158 -1.5987 -9.3102 22 6 6.8178 1.2725 -4.7999 23 6 6.9780 0.7611 -3.3633 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8463 -0.8899 28 1 1.6886 1.8463 0.8900 29 1 5.0646 0.2332 1.1827 30 1 3.6499 0.7814 2.1137 31 1 3.5350 -0.6722 1.0929 32 1 5.3565 -1.5510 -3.6099 33 1 3.8697 -0.6895 -3.1344 34 1 4.0318 0.8012 -5.0474 35 1 4.2606 -0.8565 -5.6633 36 1 3.7343 -0.5120 -8.3799 37 1 6.3146 2.2393 -4.7898 38 1 7.7991 1.3757 -5.2630 39 1 7.4040 1.5476 -2.7405 40 1 7.6342 -0.1091 -3.3534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704322055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:56 Heat of formation + Delta-G solvation = -94.526290 kcal Electronic energy + Delta-G solvation = -22025.439639 eV Core-core repulsion = 18648.755029 eV Total energy + Delta-G solvation = -3376.684610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.27244 -38.31132 -37.31087 -35.87386 -33.91973 -32.34897 -31.16669 -30.11111 -27.50423 -26.96445 -25.83902 -23.90116 -22.91880 -21.92777 -20.59151 -19.33021 -17.94915 -17.00467 -16.45035 -16.16678 -15.90105 -15.68408 -15.10088 -14.75403 -14.24282 -13.80889 -13.66214 -13.52103 -13.26836 -13.10417 -12.82851 -12.52473 -12.18598 -11.97789 -11.63214 -11.43302 -11.31921 -11.00076 -10.83228 -10.70903 -10.49772 -10.37423 -10.26284 -10.13089 -9.87711 -9.83214 -9.73330 -8.59252 -8.29896 -6.71061 -5.84271 -3.28927 2.51045 3.23133 3.35954 3.42981 3.43991 3.62426 4.22557 4.46189 4.67296 4.88730 5.08493 5.17339 5.21936 5.25905 5.31420 5.36910 5.47408 5.53081 5.58583 5.82550 5.84683 5.90337 5.95295 6.09718 6.19956 6.27460 6.41117 6.44675 6.65730 6.79251 6.92671 6.99089 7.24359 7.50291 7.73393 7.90417 8.37007 8.71638 9.13067 9.75694 10.32818 11.23507 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.004638 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.546407 B = 6035.805776 C = 6885.968918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.107 3.893 5 H 0.098 0.902 6 C -0.164 4.164 7 O -0.354 6.354 8 C 0.644 3.356 9 O -0.593 6.593 10 N -0.578 5.578 11 C 0.085 3.915 12 C 0.158 3.842 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.131 3.869 23 C 0.111 3.889 24 H 0.043 0.957 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.024 0.976 35 H 0.101 0.899 36 H 0.255 0.745 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 1.160 15.143 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.013 4.013 4 C 0.051 3.949 5 H 0.116 0.884 6 C -0.221 4.221 7 O -0.268 6.268 8 C 0.398 3.602 9 O -0.485 6.485 10 N -0.317 5.317 11 C -0.038 4.038 12 C 0.032 3.968 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.004 3.996 23 C -0.012 4.012 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.095 1.204 15.219 16.095 hybrid contribution -0.062 -0.295 -0.708 0.770 sum -5.157 0.909 14.511 15.427 Atomic orbital electron populations 1.22748 0.81134 1.02875 0.99845 1.87969 1.19469 1.26946 1.95353 1.22675 0.91645 0.85735 1.01202 1.22632 0.92236 0.98178 0.81836 0.88414 1.22089 1.02154 1.01439 0.96466 1.86401 1.33410 1.66403 1.40575 1.18106 0.80444 0.79919 0.81706 1.90897 1.59117 1.38547 1.59891 1.46956 1.19463 1.44607 1.20688 1.22751 0.94458 0.91074 0.95538 1.21281 0.87182 0.99566 0.88807 1.44011 1.16506 1.46828 1.24152 1.19229 0.92077 1.34623 0.92649 0.91380 1.25068 0.96491 1.00688 0.97247 1.70020 1.04824 1.44497 1.35273 0.86253 0.78075 0.81104 0.81113 1.21334 1.21755 1.20375 1.21311 0.96534 0.92248 0.89526 1.22278 0.81348 1.00530 0.97058 0.93883 0.94328 0.89553 0.92124 0.91284 0.91917 0.91237 0.90793 0.91848 0.90121 0.95814 0.88131 0.93476 0.95794 0.91199 0.89740 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.71 9.79 -38.80 -0.38 -5.09 16 3 C 0.06 0.72 5.82 37.16 0.22 0.94 16 4 C 0.11 1.46 2.98 -26.73 -0.08 1.38 16 5 H 0.10 1.33 7.16 -51.93 -0.37 0.96 16 6 C -0.16 -1.98 9.35 37.16 0.35 -1.63 16 7 O -0.35 -6.14 8.48 -43.10 -0.37 -6.51 16 8 C 0.64 12.46 8.40 54.05 0.45 12.91 16 9 O -0.59 -12.21 15.01 -19.28 -0.29 -12.50 16 10 N -0.58 -11.36 2.94 -178.04 -0.52 -11.89 16 11 C 0.09 1.69 6.64 -3.37 -0.02 1.67 16 12 C 0.16 3.74 5.53 -3.36 -0.02 3.72 16 13 N -0.59 -14.67 2.97 -171.79 -0.51 -15.18 16 14 C -0.26 -6.87 9.58 -15.06 -0.14 -7.01 16 15 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 16 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 17 N -0.90 -25.65 11.20 55.49 0.62 -25.03 16 18 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.13 2.77 6.67 -3.62 -0.02 2.74 16 23 C 0.11 2.09 6.59 -3.62 -0.02 2.06 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.50 6.91 -51.93 -0.36 1.14 16 34 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.10 2.60 5.99 -51.93 -0.31 2.29 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 1.38 7.94 -51.93 -0.41 0.97 16 39 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 327.07 15.07 4.93 4.93 Total: -1.00 -31.42 327.07 -6.22 -37.65 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.41 Total: -0.76 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 1.73 Total: 18.18 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.41 Total: -52.10 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.03 Total: -24.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.42 -6.22 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704322055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.878 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds