Wall clock time and date at job start Mon Mar 30 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00114 * 2 1 4 4 C 1.52997 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47678 * 185.00145 * 4 3 2 6 6 C 1.53001 * 109.47207 * 305.00197 * 4 3 2 7 7 O 1.45202 * 109.47108 * 65.00378 * 4 3 2 8 8 C 1.34639 * 117.00234 * 149.99982 * 7 4 3 9 9 O 1.21513 * 120.00012 * 0.02562 * 8 7 4 10 10 N 1.34773 * 120.00278 * 179.97438 * 8 7 4 11 11 C 1.46965 * 120.59294 * 359.72536 * 10 8 7 12 12 C 1.53808 * 108.40330 * 124.75288 * 11 10 8 13 13 N 1.46971 * 108.57742 * 49.63286 * 12 11 10 14 14 C 1.36939 * 120.58935 * 124.62669 * 13 12 11 15 15 H 1.08003 * 119.99738 * 208.18257 * 14 13 12 16 16 C 1.38809 * 120.00197 * 28.18558 * 14 13 12 17 17 N 1.31618 * 120.00238 * 17.55310 * 16 14 13 18 18 Si 1.86805 * 119.99990 * 197.56006 * 16 14 13 19 19 H 1.48492 * 109.47175 * 89.99860 * 18 16 14 20 20 H 1.48502 * 109.46745 * 209.99702 * 18 16 14 21 21 H 1.48492 * 109.46824 * 329.99768 * 18 16 14 22 22 C 1.46959 * 118.81408 * 304.65328 * 13 12 11 23 23 C 1.46965 * 120.59771 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.46945 * 59.99970 * 1 2 3 25 25 H 1.08992 * 109.47330 * 299.99972 * 1 2 3 26 26 H 1.08998 * 109.47471 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47359 * 300.00223 * 3 2 1 28 28 H 1.09001 * 109.46813 * 60.00054 * 3 2 1 29 29 H 1.09002 * 109.46908 * 179.97438 * 6 4 3 30 30 H 1.08992 * 109.47403 * 299.99650 * 6 4 3 31 31 H 1.09000 * 109.47025 * 60.00200 * 6 4 3 32 32 H 1.09000 * 109.61041 * 244.54165 * 11 10 8 33 33 H 1.08997 * 109.61079 * 5.04722 * 11 10 8 34 34 H 1.09008 * 109.74363 * 289.85601 * 12 11 10 35 35 H 1.08998 * 109.53680 * 169.30257 * 12 11 10 36 36 H 0.96995 * 120.00416 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.61124 * 295.47687 * 22 13 12 38 38 H 1.09000 * 109.74983 * 175.04801 * 22 13 12 39 39 H 1.08998 * 109.60762 * 354.95303 * 23 10 8 40 40 H 1.08997 * 109.61219 * 115.29133 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9786 2.1764 0.0902 6 6 3.9780 0.3197 1.1826 7 8 3.9727 0.5694 -1.2398 8 6 5.1877 0.9209 -1.7013 9 8 5.8644 1.7195 -1.0842 10 7 5.6539 0.3863 -2.8473 11 6 4.8496 -0.5861 -3.6005 12 6 4.6868 -0.0702 -5.0403 13 7 6.0112 0.3043 -5.5559 14 6 6.4851 -0.2396 -6.7199 15 1 7.5490 -0.3471 -6.8717 16 6 5.5982 -0.6526 -7.7046 17 7 4.3540 -0.2237 -7.6916 18 14 6.1706 -1.8174 -9.0482 19 1 5.9533 -3.2204 -8.6127 20 1 5.3977 -1.5590 -10.2896 21 1 7.6158 -1.5987 -9.3102 22 6 6.8178 1.2725 -4.7999 23 6 6.9780 0.7611 -3.3633 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6886 1.8463 -0.8899 28 1 1.6886 1.8463 0.8900 29 1 5.0646 0.2332 1.1827 30 1 3.6499 0.7814 2.1137 31 1 3.5350 -0.6722 1.0929 32 1 5.3565 -1.5510 -3.6099 33 1 3.8697 -0.6895 -3.1344 34 1 4.0318 0.8012 -5.0474 35 1 4.2606 -0.8565 -5.6633 36 1 3.7343 -0.5120 -8.3799 37 1 6.3146 2.2393 -4.7898 38 1 7.7991 1.3757 -5.2630 39 1 7.4040 1.5476 -2.7405 40 1 7.6342 -0.1091 -3.3534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704322055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:55 Heat of formation + Delta-G solvation = -114.790374 kcal Electronic energy + Delta-G solvation = -22026.318356 eV Core-core repulsion = 18648.755029 eV Total energy + Delta-G solvation = -3377.563326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70979 -39.51226 -38.65049 -37.31317 -35.70307 -33.61277 -32.87179 -31.86127 -28.77197 -28.31521 -26.67076 -25.68747 -24.61349 -23.38721 -21.94561 -20.88242 -19.59356 -18.38957 -17.95518 -17.43814 -17.11145 -16.85870 -16.58121 -16.11325 -15.65817 -15.48350 -15.39561 -15.07310 -14.78019 -14.52076 -14.03376 -13.60098 -13.44160 -13.22860 -13.12371 -12.86816 -12.67391 -12.51429 -12.35023 -12.21523 -12.09455 -12.02012 -11.92887 -11.71635 -11.56430 -11.39205 -10.63189 -10.59949 -9.96470 -8.68481 -7.88350 -5.36865 1.14202 1.50541 1.52326 1.60784 1.72801 2.51606 2.80790 2.84261 3.26840 3.59459 3.72672 3.93720 4.12919 4.21224 4.21621 4.32903 4.36957 4.44830 4.51921 4.56861 4.60546 4.64461 4.69466 4.78081 4.80427 4.85988 4.90351 5.05870 5.20163 5.21311 5.39435 5.46936 5.57837 5.65466 6.20645 6.34769 6.35935 7.10063 7.22178 7.77941 8.32014 9.17567 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.004638 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.546407 B = 6035.805776 C = 6885.968918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.067 3.933 4 C 0.095 3.905 5 H 0.096 0.904 6 C -0.156 4.156 7 O -0.362 6.362 8 C 0.646 3.354 9 O -0.607 6.607 10 N -0.586 5.586 11 C 0.105 3.895 12 C 0.167 3.833 13 N -0.609 5.609 14 C -0.266 4.266 15 H 0.074 0.926 16 C -0.046 4.046 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.283 1.283 20 H -0.297 1.297 21 H -0.268 1.268 22 C 0.131 3.869 23 C 0.121 3.879 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.092 0.908 34 H -0.003 1.003 35 H 0.076 0.924 36 H 0.252 0.748 37 H 0.011 0.989 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 0.786 16.451 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.009 4.009 4 C 0.040 3.960 5 H 0.114 0.886 6 C -0.213 4.213 7 O -0.276 6.276 8 C 0.401 3.599 9 O -0.500 6.500 10 N -0.325 5.325 11 C -0.019 4.019 12 C 0.040 3.960 13 N -0.332 5.332 14 C -0.396 4.396 15 H 0.092 0.908 16 C -0.242 4.242 17 N -0.581 5.581 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.224 1.224 21 H -0.193 1.193 22 C 0.004 3.996 23 C -0.002 4.002 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.015 0.985 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.912 0.837 16.561 17.294 hybrid contribution -0.166 -0.105 -1.048 1.067 sum -5.077 0.732 15.513 16.339 Atomic orbital electron populations 1.22921 0.79439 1.03793 1.00896 1.87922 1.21383 1.27599 1.95599 1.22733 0.89807 0.85721 1.02687 1.23065 0.93982 0.98143 0.80820 0.88584 1.22041 1.00999 1.01122 0.97164 1.86410 1.32182 1.66737 1.42315 1.18134 0.80883 0.79450 0.81455 1.90878 1.59737 1.39068 1.60282 1.47006 1.19715 1.44733 1.21040 1.22441 0.95379 0.91079 0.93004 1.21050 0.86476 0.97677 0.90752 1.44264 1.16943 1.47775 1.24239 1.19578 0.92465 1.34304 0.93251 0.90840 1.25815 0.96608 1.02201 0.99536 1.70170 1.05928 1.45862 1.36123 0.85230 0.77904 0.78980 0.78080 1.20985 1.22410 1.19258 1.21409 0.96390 0.90993 0.90763 1.22168 0.81367 1.01331 0.95338 0.93952 0.92108 0.88824 0.92659 0.87672 0.93487 0.88173 0.91427 0.91040 0.88979 0.98486 0.90596 0.93908 0.97116 0.89905 0.88662 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -9.38 9.79 -145.57 -1.43 -10.80 16 3 C 0.07 1.37 5.82 71.98 0.42 1.78 16 4 C 0.09 2.44 2.98 30.59 0.09 2.53 16 5 H 0.10 2.49 7.16 -2.39 -0.02 2.48 16 6 C -0.16 -3.48 9.35 71.98 0.67 -2.80 16 7 O -0.36 -12.27 8.48 -52.82 -0.45 -12.72 16 8 C 0.65 24.41 8.40 129.79 1.09 25.50 16 9 O -0.61 -24.35 15.01 19.80 0.30 -24.05 16 10 N -0.59 -22.51 2.94 -947.59 -2.79 -25.29 16 11 C 0.10 4.10 6.64 86.56 0.57 4.67 16 12 C 0.17 8.04 5.53 86.56 0.48 8.52 16 13 N -0.61 -30.25 2.97 -697.43 -2.07 -32.32 16 14 C -0.27 -14.21 9.58 84.03 0.80 -13.41 16 15 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 16 C -0.05 -2.49 4.90 84.86 0.42 -2.08 16 17 N -0.94 -54.19 11.20 21.65 0.24 -53.95 16 18 Si 0.97 43.64 29.59 68.60 2.03 45.67 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 C 0.13 5.46 6.67 86.40 0.58 6.03 16 23 C 0.12 4.38 6.59 86.40 0.57 4.95 16 24 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.60 7.56 -2.39 -0.02 1.58 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.09 3.38 6.91 -2.39 -0.02 3.37 16 34 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.08 4.03 5.99 -2.39 -0.01 4.02 16 36 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 3.19 7.94 -2.39 -0.02 3.18 16 39 H 0.10 3.28 6.99 -2.39 -0.02 3.26 16 40 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -66.88 327.07 3.79 -63.09 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.01 Total: 13.05 kcal Atomic # 6 Polarization: 30.40 SS G_CDS: 6.94 Total: 37.35 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.61 Total: -111.57 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -1.58 Total: -47.57 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.88 3.79 -63.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704322055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.704 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds