Wall clock time and date at job start Mon Mar 30 2020 04:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99746 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00346 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99614 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47140 * 179.97438 * 13 11 10 15 15 C 1.47834 * 110.99850 * 49.15620 * 14 13 11 16 16 C 1.54906 * 104.79513 * 146.36653 * 15 14 13 17 17 H 1.09001 * 111.02635 * 81.03524 * 16 15 14 18 18 C 1.53004 * 110.99239 * 204.83643 * 16 15 14 19 19 O 1.42898 * 109.47229 * 287.26949 * 18 16 15 20 20 C 1.55143 * 101.65313 * 322.92910 * 16 15 14 21 21 H 1.09004 * 110.70253 * 277.27141 * 20 16 15 22 22 C 1.52995 * 110.70518 * 154.03679 * 20 16 15 23 23 O 1.42905 * 109.47004 * 179.97438 * 22 20 16 24 24 C 1.47440 * 111.00132 * 170.00286 * 14 13 11 25 25 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 26 26 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 27 27 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 28 28 H 0.96996 * 119.99985 * 359.97438 * 10 9 7 29 29 H 1.08996 * 109.47258 * 300.00046 * 13 11 10 30 30 H 1.09000 * 109.47247 * 59.99885 * 13 11 10 31 31 H 1.09007 * 110.37456 * 265.19506 * 15 14 13 32 32 H 1.09003 * 110.37723 * 27.53829 * 15 14 13 33 33 H 1.09002 * 109.46996 * 47.26680 * 18 16 15 34 34 H 1.08997 * 109.47305 * 167.26117 * 18 16 15 35 35 H 0.96703 * 114.00367 * 179.97438 * 19 18 16 36 36 H 1.08994 * 109.47383 * 299.94432 * 22 20 16 37 37 H 1.09008 * 109.47388 * 59.95079 * 22 20 16 38 38 H 0.96698 * 114.00072 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.88963 * 356.14548 * 24 14 13 40 40 H 1.08998 * 109.89043 * 117.17058 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 7 3.9997 -2.5755 -0.0124 11 6 5.3248 -2.8217 -0.0127 12 8 6.1130 -1.9000 -0.0074 13 6 5.8271 -4.2425 -0.0208 14 7 7.2961 -4.2426 -0.0201 15 6 7.8254 -3.3462 1.0295 16 6 9.1311 -4.0274 1.5100 17 1 9.9574 -3.8106 0.8329 18 6 9.4741 -3.6072 2.9407 19 8 9.9382 -2.2557 2.9419 20 6 8.7422 -5.5280 1.4496 21 1 8.2003 -5.8222 2.3485 22 6 9.9833 -6.4010 1.2543 23 8 9.5956 -7.7755 1.2030 24 6 7.8243 -5.5996 0.2112 25 1 -0.4850 0.8401 0.0040 26 1 3.8752 -0.6760 -0.8923 27 1 3.8746 -0.6849 0.8876 28 1 3.3694 -3.3127 -0.0163 29 1 5.4629 -4.7617 0.8657 30 1 5.4645 -4.7510 -0.9141 31 1 8.0416 -2.3618 0.6142 32 1 7.1152 -3.2643 1.8523 33 1 8.5847 -3.6865 3.5658 34 1 10.2538 -4.2595 3.3339 35 1 10.1742 -1.9216 3.8182 36 1 10.4765 -6.1281 0.3214 37 1 10.6702 -6.2477 2.0868 38 1 10.3337 -8.3881 1.0801 39 1 7.0024 -6.2906 0.3983 40 1 8.3946 -5.9286 -0.6576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705344123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:36 Heat of formation + Delta-G solvation = -129.732362 kcal Electronic energy + Delta-G solvation = -21341.998532 eV Core-core repulsion = 17963.787273 eV Total energy + Delta-G solvation = -3378.211260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.08890 -38.55142 -36.94123 -36.45181 -34.28165 -32.91934 -32.32579 -29.91254 -28.78821 -26.83722 -25.69373 -23.71731 -21.90332 -20.81391 -20.36889 -19.84835 -17.73736 -17.47388 -17.15772 -16.41586 -15.81038 -15.46195 -15.30579 -15.25134 -14.65630 -14.33740 -14.03150 -13.73609 -13.46997 -13.21401 -12.75572 -12.57676 -12.45725 -12.24525 -11.90882 -11.74961 -11.40578 -11.24335 -11.03909 -10.87142 -10.74887 -10.73952 -10.34762 -10.09536 -9.94821 -9.48389 -9.01778 -8.76570 -8.23488 -8.09130 -6.20606 -4.22744 3.24848 3.28768 3.34577 3.44063 3.64276 3.75387 4.03869 4.23759 4.34649 4.46314 4.55744 4.81961 4.95889 5.02048 5.11210 5.14725 5.23938 5.30739 5.33426 5.36582 5.45878 5.49403 5.56791 5.67081 5.72933 5.95479 6.16602 6.47813 6.80470 7.00185 7.04865 7.09608 7.26953 7.27790 7.41290 7.45037 8.15445 8.53364 8.76571 8.97029 9.39766 10.91359 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.003791 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.636678 B = 7384.275251 C = 8120.228363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.707 5.707 11 C 0.498 3.502 12 O -0.542 6.542 13 C 0.030 3.970 14 N -0.516 5.516 15 C 0.067 3.933 16 C -0.097 4.097 17 H 0.093 0.907 18 C 0.088 3.912 19 O -0.567 6.567 20 C -0.104 4.104 21 H 0.083 0.917 22 C 0.088 3.912 23 O -0.573 6.573 24 C 0.054 3.946 25 H 0.267 0.733 26 H 0.025 0.975 27 H 0.019 0.981 28 H 0.396 0.604 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.378 0.622 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.379 0.621 39 H 0.059 0.941 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.332 -13.854 5.283 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.184 1.184 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.421 6.421 13 C -0.102 4.102 14 N -0.240 5.240 15 C -0.059 4.059 16 C -0.117 4.117 17 H 0.111 0.889 18 C 0.009 3.991 19 O -0.372 6.372 20 C -0.123 4.123 21 H 0.101 0.899 22 C 0.009 3.991 23 O -0.378 6.378 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.229 0.771 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.225 0.775 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.226 0.774 39 H 0.078 0.922 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.132 -12.661 4.214 24.153 hybrid contribution 0.255 -0.042 1.386 1.410 sum 20.387 -12.704 5.600 24.665 Atomic orbital electron populations 1.69886 1.06224 1.27418 1.49508 1.24803 0.94795 0.99201 0.93862 0.86809 0.80629 0.83189 0.79024 1.19895 1.18428 1.20893 1.21103 0.88566 0.95212 1.53252 0.90279 1.19472 0.95159 0.78656 0.96745 1.46161 1.05603 1.11044 1.72779 1.20380 0.83176 0.90699 0.77511 1.90644 1.54964 1.46212 1.50245 1.22293 0.89373 0.95705 1.02783 1.63523 1.05775 1.07154 1.47563 1.23123 0.92511 0.98186 0.92125 1.22406 1.00161 0.92936 0.96158 0.88912 1.22107 0.97469 0.83191 0.96306 1.86544 1.87692 1.28332 1.34633 1.22355 0.96436 0.93574 0.99978 0.89850 1.22157 0.95626 0.81367 0.99904 1.86492 1.38094 1.16645 1.96574 1.22847 0.97786 0.90097 0.96639 0.92273 0.95663 0.96262 0.77086 0.92211 0.87998 0.87387 0.93982 0.93552 0.93800 0.77519 0.93009 0.93656 0.77442 0.92240 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.54 -15.07 9.83 -34.44 -0.34 -15.40 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.54 4.50 -5.20 -0.02 5.52 16 10 N -0.71 -14.52 5.55 -61.47 -0.34 -14.86 16 11 C 0.50 9.68 7.35 -10.99 -0.08 9.60 16 12 O -0.54 -12.41 13.55 5.56 0.08 -12.33 16 13 C 0.03 0.44 5.31 -4.97 -0.03 0.41 16 14 N -0.52 -7.54 5.21 -232.70 -1.21 -8.75 16 15 C 0.07 1.03 4.38 -2.30 -0.01 1.02 16 16 C -0.10 -1.11 2.74 -88.48 -0.24 -1.36 16 17 H 0.09 1.10 8.05 -51.93 -0.42 0.68 16 18 C 0.09 0.87 6.50 37.16 0.24 1.11 16 19 O -0.57 -6.31 13.62 -35.23 -0.48 -6.79 16 20 C -0.10 -1.04 2.70 -88.80 -0.24 -1.28 16 21 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 22 C 0.09 0.69 6.36 37.15 0.24 0.93 16 23 O -0.57 -4.66 13.50 -35.23 -0.48 -5.13 16 24 C 0.05 0.62 6.32 -2.84 -0.02 0.61 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.67 7.19 -51.93 -0.37 0.30 16 27 H 0.02 0.50 7.58 -51.93 -0.39 0.11 16 28 H 0.40 7.13 8.32 -40.82 -0.34 6.79 16 29 H 0.06 0.77 7.96 -51.93 -0.41 0.36 16 30 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.11 2.01 6.71 -51.92 -0.35 1.67 16 32 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 33 H 0.05 0.45 7.96 -51.93 -0.41 0.04 16 34 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.38 2.40 9.12 45.56 0.42 2.81 16 36 H 0.05 0.39 8.06 -51.93 -0.42 -0.03 16 37 H 0.05 0.30 8.08 -51.92 -0.42 -0.12 16 38 H 0.38 1.34 9.12 45.56 0.42 1.75 16 39 H 0.06 0.66 7.49 -51.93 -0.39 0.27 16 40 H 0.08 0.91 7.77 -51.93 -0.40 0.50 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -35.01 326.19 -6.73 -41.74 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.72 Total: 6.89 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.60 Total: 3.24 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.78 Total: -49.57 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.88 Total: -24.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.01 -6.73 -41.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705344123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.993 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds