Wall clock time and date at job start Mon Mar 30 2020 04:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99746 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00346 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99614 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47140 * 179.97438 * 13 11 10 15 15 C 1.47834 * 110.99850 * 49.15620 * 14 13 11 16 16 C 1.54906 * 104.79513 * 146.36653 * 15 14 13 17 17 H 1.09001 * 111.02635 * 81.03524 * 16 15 14 18 18 C 1.53004 * 110.99239 * 204.83643 * 16 15 14 19 19 O 1.42898 * 109.47229 * 287.26949 * 18 16 15 20 20 C 1.55143 * 101.65313 * 322.92910 * 16 15 14 21 21 H 1.09004 * 110.70253 * 277.27141 * 20 16 15 22 22 C 1.52995 * 110.70518 * 154.03679 * 20 16 15 23 23 O 1.42905 * 109.47004 * 179.97438 * 22 20 16 24 24 C 1.47440 * 111.00132 * 170.00286 * 14 13 11 25 25 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 26 26 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 27 27 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 28 28 H 0.96996 * 119.99985 * 359.97438 * 10 9 7 29 29 H 1.08996 * 109.47258 * 300.00046 * 13 11 10 30 30 H 1.09000 * 109.47247 * 59.99885 * 13 11 10 31 31 H 1.09007 * 110.37456 * 265.19506 * 15 14 13 32 32 H 1.09003 * 110.37723 * 27.53829 * 15 14 13 33 33 H 1.09002 * 109.46996 * 47.26680 * 18 16 15 34 34 H 1.08997 * 109.47305 * 167.26117 * 18 16 15 35 35 H 0.96703 * 114.00367 * 179.97438 * 19 18 16 36 36 H 1.08994 * 109.47383 * 299.94432 * 22 20 16 37 37 H 1.09008 * 109.47388 * 59.95079 * 22 20 16 38 38 H 0.96698 * 114.00072 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.88963 * 356.14548 * 24 14 13 40 40 H 1.08998 * 109.89043 * 117.17058 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 7 3.9997 -2.5755 -0.0124 11 6 5.3248 -2.8217 -0.0127 12 8 6.1130 -1.9000 -0.0074 13 6 5.8271 -4.2425 -0.0208 14 7 7.2961 -4.2426 -0.0201 15 6 7.8254 -3.3462 1.0295 16 6 9.1311 -4.0274 1.5100 17 1 9.9574 -3.8106 0.8329 18 6 9.4741 -3.6072 2.9407 19 8 9.9382 -2.2557 2.9419 20 6 8.7422 -5.5280 1.4496 21 1 8.2003 -5.8222 2.3485 22 6 9.9833 -6.4010 1.2543 23 8 9.5956 -7.7755 1.2030 24 6 7.8243 -5.5996 0.2112 25 1 -0.4850 0.8401 0.0040 26 1 3.8752 -0.6760 -0.8923 27 1 3.8746 -0.6849 0.8876 28 1 3.3694 -3.3127 -0.0163 29 1 5.4629 -4.7617 0.8657 30 1 5.4645 -4.7510 -0.9141 31 1 8.0416 -2.3618 0.6142 32 1 7.1152 -3.2643 1.8523 33 1 8.5847 -3.6865 3.5658 34 1 10.2538 -4.2595 3.3339 35 1 10.1742 -1.9216 3.8182 36 1 10.4765 -6.1281 0.3214 37 1 10.6702 -6.2477 2.0868 38 1 10.3337 -8.3881 1.0801 39 1 7.0024 -6.2906 0.3983 40 1 8.3946 -5.9286 -0.6576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705344123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:36 Heat of formation + Delta-G solvation = -163.367460 kcal Electronic energy + Delta-G solvation = -21343.457060 eV Core-core repulsion = 17963.787273 eV Total energy + Delta-G solvation = -3379.669787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28104 -39.86874 -37.62154 -37.31981 -36.13759 -34.44486 -33.88312 -30.79290 -30.52401 -28.26640 -26.54309 -24.88498 -23.63611 -21.88690 -21.48059 -21.19695 -19.20155 -18.42008 -18.08134 -17.77679 -17.23977 -16.81335 -16.63481 -16.31958 -15.88427 -15.63217 -15.34036 -14.79977 -14.72665 -14.56954 -14.34885 -13.99799 -13.82227 -13.53290 -13.10046 -12.95226 -12.77008 -12.68164 -12.27493 -12.26270 -11.94964 -11.75675 -11.67782 -11.63095 -11.00289 -10.93453 -10.78423 -10.58741 -9.93925 -9.31264 -8.41841 -6.48762 1.30884 1.33394 1.46453 1.70396 2.26071 2.31028 2.93419 2.96003 3.06078 3.38737 3.56981 3.83722 3.92962 4.03868 4.21693 4.23546 4.29360 4.42975 4.44581 4.49016 4.55342 4.55993 4.66934 4.77103 4.84887 4.89683 5.00062 5.01285 5.21620 5.25972 5.30792 5.53551 5.86266 5.98630 6.09795 6.52087 6.83403 6.89316 6.95224 7.14239 7.40815 8.72924 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.027671 B = 0.003791 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.636678 B = 7384.275251 C = 8120.228363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.235 3.765 10 N -0.706 5.706 11 C 0.495 3.505 12 O -0.579 6.579 13 C 0.040 3.960 14 N -0.533 5.533 15 C 0.071 3.929 16 C -0.090 4.090 17 H 0.088 0.912 18 C 0.087 3.913 19 O -0.594 6.594 20 C -0.096 4.096 21 H 0.085 0.915 22 C 0.092 3.908 23 O -0.590 6.590 24 C 0.054 3.946 25 H 0.273 0.727 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.409 0.591 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.399 0.601 39 H 0.069 0.931 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.053 -15.302 5.856 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.111 3.889 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.459 6.459 13 C -0.090 4.090 14 N -0.258 5.258 15 C -0.056 4.056 16 C -0.109 4.109 17 H 0.106 0.894 18 C 0.010 3.990 19 O -0.402 6.402 20 C -0.115 4.115 21 H 0.103 0.897 22 C 0.014 3.986 23 O -0.398 6.398 24 C -0.073 4.073 25 H 0.082 0.918 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.244 0.756 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.249 0.751 39 H 0.087 0.913 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 21.870 -14.158 4.799 26.491 hybrid contribution -0.280 0.345 1.194 1.275 sum 21.589 -13.813 5.994 26.322 Atomic orbital electron populations 1.69980 1.07640 1.28635 1.50669 1.25594 0.95547 1.02639 0.93571 0.85860 0.79187 0.79398 0.79457 1.18947 1.18731 1.19656 1.21293 0.89908 0.94630 1.52644 0.92177 1.19055 0.93344 0.81068 0.95471 1.46012 1.06666 1.09713 1.73290 1.21249 0.82120 0.92577 0.75818 1.90647 1.55703 1.48034 1.51530 1.22276 0.89674 0.92071 1.05026 1.63465 1.05616 1.08937 1.47799 1.22873 0.94285 0.97009 0.91482 1.22321 0.97825 0.93694 0.97085 0.89388 1.22160 0.98471 0.83242 0.95176 1.86496 1.87854 1.29228 1.36652 1.22287 0.97193 0.92839 0.99228 0.89670 1.22068 0.94454 0.81114 1.00925 1.86429 1.39806 1.16944 1.96660 1.22911 0.98401 0.88265 0.97707 0.91800 0.97173 0.97276 0.75576 0.89762 0.85580 0.91712 0.95515 0.93629 0.90748 0.75341 0.92574 0.91851 0.75121 0.91282 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.96 21.45 0.30 -55.82 16 2 C 0.03 1.54 5.47 84.66 0.46 2.00 16 3 Si 0.94 44.95 27.47 68.60 1.88 46.83 16 4 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.26 -12.64 6.53 99.48 0.65 -11.99 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.55 -30.69 9.83 25.60 0.25 -30.44 16 8 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 9 C 0.23 11.81 4.50 85.63 0.38 12.20 16 10 N -0.71 -28.96 5.55 -466.79 -2.59 -31.55 16 11 C 0.50 19.18 7.35 87.66 0.64 19.82 16 12 O -0.58 -27.05 13.55 -3.04 -0.04 -27.09 16 13 C 0.04 1.12 5.31 85.56 0.45 1.57 16 14 N -0.53 -15.02 5.21 -890.12 -4.64 -19.65 16 15 C 0.07 2.17 4.38 86.78 0.38 2.55 16 16 C -0.09 -1.95 2.74 -9.41 -0.03 -1.97 16 17 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 18 C 0.09 1.58 6.50 71.98 0.47 2.05 16 19 O -0.59 -12.73 13.62 -148.98 -2.03 -14.75 16 20 C -0.10 -1.69 2.70 -9.61 -0.03 -1.72 16 21 H 0.08 1.50 8.04 -2.38 -0.02 1.48 16 22 C 0.09 1.16 6.36 71.98 0.46 1.62 16 23 O -0.59 -7.66 13.50 -148.98 -2.01 -9.67 16 24 C 0.05 1.13 6.32 86.65 0.55 1.67 16 25 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 26 H 0.01 0.55 7.19 -2.39 -0.02 0.54 16 27 H 0.01 0.49 7.58 -2.39 -0.02 0.47 16 28 H 0.41 14.51 8.32 -92.71 -0.77 13.74 16 29 H 0.08 1.96 7.96 -2.39 -0.02 1.94 16 30 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.06 2.53 6.71 -2.38 -0.02 2.52 16 32 H 0.03 0.87 7.30 -2.39 -0.02 0.85 16 33 H 0.05 0.82 7.96 -2.39 -0.02 0.81 16 34 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.40 4.58 9.12 -74.06 -0.68 3.90 16 36 H 0.06 0.67 8.06 -2.39 -0.02 0.65 16 37 H 0.06 0.59 8.08 -2.38 -0.02 0.57 16 38 H 0.40 1.52 9.12 -74.06 -0.68 0.84 16 39 H 0.07 1.31 7.49 -2.39 -0.02 1.30 16 40 H 0.09 1.71 7.77 -2.39 -0.02 1.69 16 Total: -1.00 -76.30 326.19 -6.23 -82.54 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -1.11 Total: 19.81 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 4.00 Total: 9.35 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -6.93 Total: -107.02 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -4.08 Total: -51.52 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.83 kcal Total: -76.30 -6.23 -82.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705344123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.829 kcal (2) G-P(sol) polarization free energy of solvation -76.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds