Wall clock time and date at job start Mon Mar 30 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46949 * 239.99656 * 3 2 1 5 5 H 1.48499 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47219 * 119.99889 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 N 1.46896 * 109.47254 * 180.02562 * 13 11 10 15 15 C 1.48567 * 110.99726 * 170.00412 * 14 13 11 16 16 C 1.54382 * 104.59221 * 200.96012 * 15 14 13 17 17 H 1.09001 * 110.32123 * 264.95509 * 16 15 14 18 18 C 1.52993 * 110.32370 * 142.84694 * 16 15 14 19 19 O 1.42894 * 109.47105 * 66.45573 * 18 16 15 20 20 C 1.54264 * 105.05871 * 23.84742 * 16 15 14 21 21 H 1.09004 * 110.32069 * 241.10408 * 20 16 15 22 22 C 1.52999 * 110.32104 * 119.00440 * 20 16 15 23 23 O 1.42900 * 109.47271 * 175.00084 * 22 20 16 24 24 C 1.48552 * 111.00315 * 54.58153 * 14 13 11 25 25 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 27 27 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 28 28 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 30 30 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 31 31 H 1.09001 * 110.40813 * 319.73115 * 15 14 13 32 32 H 1.08998 * 110.41527 * 82.18002 * 15 14 13 33 33 H 1.09007 * 109.46926 * 186.44763 * 18 16 15 34 34 H 1.08996 * 109.47205 * 306.45071 * 18 16 15 35 35 H 0.96704 * 114.00309 * 179.97438 * 19 18 16 36 36 H 1.09007 * 109.46601 * 294.99417 * 22 20 16 37 37 H 1.09000 * 109.47695 * 54.99551 * 22 20 16 38 38 H 0.96701 * 114.00272 * 179.97438 * 23 22 20 39 39 H 1.09004 * 110.41125 * 277.81849 * 24 14 13 40 40 H 1.09004 * 110.41393 * 40.25852 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 7 1.9984 -7.3010 0.0173 15 6 2.9154 -8.4461 -0.2173 16 6 1.9980 -9.5833 -0.7159 17 1 1.7047 -10.2249 0.1150 18 6 2.7073 -10.4036 -1.7951 19 8 3.8177 -11.0925 -1.2169 20 6 0.7626 -8.8721 -1.3057 21 1 -0.1370 -9.1648 -0.7643 22 6 0.6183 -9.2032 -2.7924 23 8 -0.5923 -8.6319 -3.2924 24 6 1.0375 -7.3652 -1.1138 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 3.1566 -3.4355 0.0009 29 1 3.3604 -5.9753 -0.8771 30 1 3.3588 -5.9669 0.9027 31 1 3.6537 -8.1922 -0.9779 32 1 3.4083 -8.7347 0.7110 33 1 2.0106 -11.1278 -2.2175 34 1 3.0621 -9.7387 -2.5825 35 1 4.3148 -11.6343 -1.8449 36 1 1.4669 -8.7929 -3.3400 37 1 0.5905 -10.2850 -2.9228 38 1 -0.7491 -8.8019 -4.2313 39 1 0.1165 -6.8400 -0.8606 40 1 1.4819 -6.9422 -2.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705388593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:38 Heat of formation + Delta-G solvation = -128.135627 kcal Electronic energy + Delta-G solvation = -21329.920715 eV Core-core repulsion = 17951.778695 eV Total energy + Delta-G solvation = -3378.142020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08954 -38.53065 -36.82587 -36.42106 -34.15816 -33.03642 -32.29094 -29.60147 -28.54731 -26.69589 -25.06695 -24.23961 -22.39199 -21.20807 -19.70458 -19.25366 -18.29716 -17.06031 -16.88984 -16.30172 -15.80556 -15.61067 -15.34739 -14.88059 -14.78875 -14.41470 -14.09452 -13.53107 -13.46434 -13.14181 -12.74131 -12.36921 -12.05579 -11.91467 -11.88308 -11.74208 -11.35635 -11.08581 -11.03050 -10.93662 -10.79764 -10.53171 -10.44635 -10.26841 -9.87171 -9.39013 -8.90672 -8.71088 -8.30762 -7.82988 -6.14603 -4.21673 3.26307 3.30983 3.32546 3.40723 3.73516 3.82287 4.02806 4.28764 4.39688 4.42566 4.71429 4.78497 4.99903 5.04155 5.09727 5.13035 5.21153 5.31944 5.38566 5.42872 5.47811 5.59446 5.65089 5.74605 5.78969 6.02259 6.17914 6.50637 6.94819 7.01832 7.27172 7.35059 7.47668 7.48979 7.55064 7.69475 7.99448 8.65677 8.80859 9.15065 9.44933 10.95561 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.003436 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.304484 B = 8146.461169 C = 8679.636482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.539 6.539 13 C 0.025 3.975 14 N -0.495 5.495 15 C 0.042 3.958 16 C -0.085 4.085 17 H 0.091 0.909 18 C 0.078 3.922 19 O -0.571 6.571 20 C -0.089 4.089 21 H 0.092 0.908 22 C 0.079 3.921 23 O -0.566 6.566 24 C 0.044 3.956 25 H 0.266 0.734 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.389 0.611 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.378 0.622 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.377 0.623 39 H 0.118 0.882 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 -21.227 -6.584 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.417 6.417 13 C -0.107 4.107 14 N -0.219 5.219 15 C -0.085 4.085 16 C -0.104 4.104 17 H 0.110 0.890 18 C 0.000 4.000 19 O -0.377 6.377 20 C -0.108 4.108 21 H 0.111 0.889 22 C 0.001 3.999 23 O -0.371 6.371 24 C -0.083 4.083 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.222 0.778 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.135 0.865 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.904 -20.725 -4.891 22.098 hybrid contribution 1.696 0.671 -1.913 2.643 sum 7.600 -20.054 -6.804 22.499 Atomic orbital electron populations 1.69967 1.06103 1.27400 1.48789 1.24957 0.94916 0.99432 0.94719 0.86471 0.79408 0.82334 0.78666 1.20108 1.21068 1.20052 1.21198 0.93212 0.90510 1.53335 0.91982 1.19083 0.88271 0.81858 0.97724 1.46436 1.11065 1.06061 1.72717 1.20274 0.89520 0.84202 0.77861 1.90610 1.16725 1.84336 1.50078 1.22245 0.95962 0.89851 1.02645 1.65299 1.13211 1.00802 1.42552 1.23157 0.94266 0.90491 1.00636 1.21865 0.94236 0.96238 0.98032 0.89024 1.22458 0.87905 0.94533 0.95134 1.86504 1.44713 1.65970 1.40465 1.21956 0.98293 0.96484 0.94067 0.88923 1.22429 0.86766 0.96178 0.94540 1.86579 1.41727 1.79061 1.29712 1.23355 0.99469 0.94169 0.91332 0.92390 0.95612 0.95493 0.77820 0.92433 0.88092 0.93859 0.89704 0.93136 0.93478 0.77542 0.93740 0.93444 0.77639 0.86451 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 N -0.71 -15.31 5.55 -61.47 -0.34 -15.65 16 11 C 0.50 10.21 7.54 -10.98 -0.08 10.13 16 12 O -0.54 -13.18 13.67 5.55 0.08 -13.10 16 13 C 0.02 0.38 5.55 -4.98 -0.03 0.35 16 14 N -0.49 -7.59 5.33 -231.41 -1.23 -8.82 16 15 C 0.04 0.51 5.88 -2.18 -0.01 0.50 16 16 C -0.08 -0.90 3.34 -89.24 -0.30 -1.20 16 17 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 18 C 0.08 0.62 5.17 37.15 0.19 0.81 16 19 O -0.57 -4.73 13.49 -35.23 -0.48 -5.21 16 20 C -0.09 -1.08 3.32 -89.24 -0.30 -1.38 16 21 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 22 C 0.08 0.77 5.19 37.16 0.19 0.96 16 23 O -0.57 -6.43 13.55 -35.23 -0.48 -6.91 16 24 C 0.04 0.69 4.76 -2.19 -0.01 0.68 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.39 7.12 8.32 -40.82 -0.34 6.78 16 29 H 0.06 0.77 7.88 -51.93 -0.41 0.36 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.04 0.49 7.48 -51.93 -0.39 0.10 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.33 6.54 -51.93 -0.34 -0.01 16 34 H 0.05 0.35 6.99 -51.93 -0.36 -0.01 16 35 H 0.38 1.37 9.12 45.56 0.42 1.78 16 36 H 0.04 0.40 7.00 -51.93 -0.36 0.04 16 37 H 0.05 0.35 6.44 -51.93 -0.33 0.02 16 38 H 0.38 2.40 9.12 45.56 0.42 2.81 16 39 H 0.12 2.32 6.05 -51.93 -0.31 2.01 16 40 H 0.04 0.59 7.61 -51.93 -0.40 0.19 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -35.25 323.95 -7.13 -42.38 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.49 Total: 8.07 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.79 Total: 4.03 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.84 Total: -50.13 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.88 Total: -25.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.25 -7.13 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705388593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.756 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds