Wall clock time and date at job start Mon Mar 30 2020 04:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48501 * 109.46949 * 239.99656 * 3 2 1 5 5 H 1.48499 * 109.47367 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47219 * 119.99889 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 N 1.46896 * 109.47254 * 180.02562 * 13 11 10 15 15 C 1.48567 * 110.99726 * 170.00412 * 14 13 11 16 16 C 1.54382 * 104.59221 * 200.96012 * 15 14 13 17 17 H 1.09001 * 110.32123 * 264.95509 * 16 15 14 18 18 C 1.52993 * 110.32370 * 142.84694 * 16 15 14 19 19 O 1.42894 * 109.47105 * 66.45573 * 18 16 15 20 20 C 1.54264 * 105.05871 * 23.84742 * 16 15 14 21 21 H 1.09004 * 110.32069 * 241.10408 * 20 16 15 22 22 C 1.52999 * 110.32104 * 119.00440 * 20 16 15 23 23 O 1.42900 * 109.47271 * 175.00084 * 22 20 16 24 24 C 1.48552 * 111.00315 * 54.58153 * 14 13 11 25 25 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 27 27 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 28 28 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 30 30 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 31 31 H 1.09001 * 110.40813 * 319.73115 * 15 14 13 32 32 H 1.08998 * 110.41527 * 82.18002 * 15 14 13 33 33 H 1.09007 * 109.46926 * 186.44763 * 18 16 15 34 34 H 1.08996 * 109.47205 * 306.45071 * 18 16 15 35 35 H 0.96704 * 114.00309 * 179.97438 * 19 18 16 36 36 H 1.09007 * 109.46601 * 294.99417 * 22 20 16 37 37 H 1.09000 * 109.47695 * 54.99551 * 22 20 16 38 38 H 0.96701 * 114.00272 * 179.97438 * 23 22 20 39 39 H 1.09004 * 110.41125 * 277.81849 * 24 14 13 40 40 H 1.09004 * 110.41393 * 40.25852 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 7 1.9984 -7.3010 0.0173 15 6 2.9154 -8.4461 -0.2173 16 6 1.9980 -9.5833 -0.7159 17 1 1.7047 -10.2249 0.1150 18 6 2.7073 -10.4036 -1.7951 19 8 3.8177 -11.0925 -1.2169 20 6 0.7626 -8.8721 -1.3057 21 1 -0.1370 -9.1648 -0.7643 22 6 0.6183 -9.2032 -2.7924 23 8 -0.5923 -8.6319 -3.2924 24 6 1.0375 -7.3652 -1.1138 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 3.1566 -3.4355 0.0009 29 1 3.3604 -5.9753 -0.8771 30 1 3.3588 -5.9669 0.9027 31 1 3.6537 -8.1922 -0.9779 32 1 3.4083 -8.7347 0.7110 33 1 2.0106 -11.1278 -2.2175 34 1 3.0621 -9.7387 -2.5825 35 1 4.3148 -11.6343 -1.8449 36 1 1.4669 -8.7929 -3.3400 37 1 0.5905 -10.2850 -2.9228 38 1 -0.7491 -8.8019 -4.2313 39 1 0.1165 -6.8400 -0.8606 40 1 1.4819 -6.9422 -2.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705388593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:38 Heat of formation + Delta-G solvation = -162.409171 kcal Electronic energy + Delta-G solvation = -21331.406928 eV Core-core repulsion = 17951.778695 eV Total energy + Delta-G solvation = -3379.628232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26837 -39.98253 -37.51695 -37.34926 -36.11762 -34.40090 -34.02149 -30.54149 -30.16140 -28.30890 -25.94603 -25.46360 -24.16742 -22.38339 -21.39797 -20.21297 -19.00920 -18.85444 -17.64960 -17.49776 -17.24652 -17.05875 -16.68648 -16.43278 -15.87538 -15.60741 -15.58639 -14.71225 -14.57800 -14.29678 -14.11812 -14.01310 -13.62975 -13.42192 -13.01500 -12.91474 -12.77422 -12.67666 -12.42230 -12.23919 -12.08706 -11.96733 -11.52070 -11.27389 -11.17779 -10.80001 -10.58843 -10.54840 -9.84935 -9.46415 -8.29714 -6.47014 1.42359 1.46919 1.55155 1.74832 2.26532 2.46612 2.99411 3.04824 3.16855 3.35350 3.53125 3.81451 4.00632 4.04713 4.18574 4.24538 4.33975 4.34982 4.41437 4.45561 4.54260 4.58255 4.59531 4.78230 4.94240 5.09206 5.09374 5.22551 5.22938 5.25708 5.48782 5.68644 5.79643 5.83620 5.93465 6.63875 6.90727 6.91444 6.97480 7.22563 7.50337 8.82423 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.031093 B = 0.003436 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.304484 B = 8146.461169 C = 8679.636482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.491 3.509 12 O -0.585 6.585 13 C 0.038 3.962 14 N -0.518 5.518 15 C 0.046 3.954 16 C -0.080 4.080 17 H 0.086 0.914 18 C 0.084 3.916 19 O -0.589 6.589 20 C -0.086 4.086 21 H 0.074 0.926 22 C 0.080 3.920 23 O -0.598 6.598 24 C 0.047 3.953 25 H 0.269 0.731 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.408 0.592 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.397 0.603 39 H 0.066 0.934 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.642 -22.269 -7.444 25.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.359 5.359 11 C 0.278 3.722 12 O -0.465 6.465 13 C -0.093 4.093 14 N -0.242 5.242 15 C -0.082 4.082 16 C -0.099 4.099 17 H 0.105 0.895 18 C 0.006 3.994 19 O -0.398 6.398 20 C -0.105 4.105 21 H 0.093 0.907 22 C 0.003 3.997 23 O -0.406 6.406 24 C -0.080 4.080 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.003 0.997 28 H 0.244 0.756 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.247 0.753 39 H 0.084 0.916 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.128 -21.819 -5.776 24.347 hybrid contribution 0.651 0.921 -1.630 1.982 sum 9.779 -20.898 -7.406 24.233 Atomic orbital electron populations 1.70142 1.08360 1.28668 1.49868 1.26110 0.95787 1.04031 0.93789 0.85177 0.77879 0.76418 0.79554 1.18540 1.21101 1.18592 1.21600 0.94338 0.90540 1.53074 0.89705 1.18502 0.88667 0.84358 0.93882 1.46166 1.11184 1.05407 1.73103 1.21327 0.89961 0.84934 0.75960 1.90619 1.19301 1.85022 1.51585 1.22200 0.94422 0.87443 1.05257 1.65249 1.14430 1.01727 1.42800 1.23216 0.94099 0.89349 1.01488 1.21813 0.93369 0.95954 0.98791 0.89511 1.22360 0.88267 0.94871 0.93899 1.86442 1.44963 1.66493 1.41899 1.21879 0.98457 0.93975 0.96194 0.90749 1.22492 0.86634 0.97989 0.92591 1.86532 1.42635 1.79742 1.31720 1.23107 0.97480 0.96330 0.91106 0.92230 0.99684 0.99719 0.75587 0.89463 0.85357 0.92352 0.89162 0.91188 0.92416 0.75112 0.92458 0.90264 0.75309 0.91605 0.94919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.13 5.46 84.66 0.46 0.60 16 3 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.56 -30.90 9.28 25.60 0.24 -30.66 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 15.21 5.43 85.63 0.46 15.68 16 10 N -0.71 -30.89 5.55 -466.79 -2.59 -33.48 16 11 C 0.49 20.67 7.54 87.66 0.66 21.33 16 12 O -0.58 -30.43 13.67 -3.04 -0.04 -30.47 16 13 C 0.04 1.10 5.55 85.56 0.47 1.58 16 14 N -0.52 -15.59 5.33 -886.05 -4.73 -20.31 16 15 C 0.05 0.99 5.88 86.45 0.51 1.50 16 16 C -0.08 -1.54 3.34 -9.90 -0.03 -1.58 16 17 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 18 C 0.08 1.04 5.17 71.98 0.37 1.41 16 19 O -0.59 -7.66 13.49 -148.98 -2.01 -9.67 16 20 C -0.09 -2.05 3.32 -9.90 -0.03 -2.08 16 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 22 C 0.08 1.42 5.19 71.98 0.37 1.79 16 23 O -0.60 -13.32 13.55 -148.98 -2.02 -15.34 16 24 C 0.05 1.54 4.76 86.45 0.41 1.95 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 27 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 28 H 0.41 14.51 8.32 -92.71 -0.77 13.74 16 29 H 0.09 2.07 7.88 -2.39 -0.02 2.05 16 30 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.06 1.11 7.48 -2.39 -0.02 1.09 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 0.62 6.54 -2.38 -0.02 0.60 16 34 H 0.06 0.62 6.99 -2.39 -0.02 0.60 16 35 H 0.40 1.39 9.12 -74.05 -0.68 0.72 16 36 H 0.06 0.87 7.00 -2.38 -0.02 0.86 16 37 H 0.08 0.91 6.44 -2.39 -0.02 0.89 16 38 H 0.40 4.64 9.12 -74.06 -0.68 3.97 16 39 H 0.07 2.83 6.05 -2.38 -0.01 2.81 16 40 H 0.03 1.05 7.61 -2.38 -0.02 1.03 16 Total: -1.00 -81.35 323.95 -6.22 -87.57 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -1.04 Total: 22.44 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 3.90 Total: 11.52 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -7.03 Total: -110.83 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -4.07 Total: -55.48 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -81.35 -6.22 -87.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705388593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.840 kcal (2) G-P(sol) polarization free energy of solvation -81.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds