Wall clock time and date at job start Mon Mar 30 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00198 * 2 1 4 4 C 1.53005 * 109.46825 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47219 * 65.61997 * 4 3 2 6 6 C 1.46495 * 119.99646 * 276.91720 * 5 4 3 7 7 C 1.50703 * 109.46865 * 269.72134 * 6 5 4 8 8 H 1.07996 * 120.00106 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99920 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99905 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47141 * 89.99747 * 11 9 7 13 13 H 1.48502 * 109.46852 * 209.99276 * 11 9 7 14 14 H 1.48498 * 109.47437 * 329.99607 * 11 9 7 15 15 C 1.34768 * 119.99975 * 96.63952 * 5 4 3 16 16 O 1.21281 * 119.99955 * 174.55665 * 15 5 4 17 17 C 1.50703 * 120.00086 * 354.55694 * 15 5 4 18 18 H 1.09002 * 110.33094 * 207.86934 * 17 15 5 19 19 O 1.44422 * 110.37465 * 330.12011 * 17 15 5 20 20 C 1.44417 * 105.27959 * 159.34335 * 19 17 15 21 21 C 1.54479 * 104.80152 * 319.49037 * 20 19 17 22 22 C 1.54481 * 110.37031 * 85.50077 * 17 15 5 23 23 H 1.08993 * 110.51115 * 335.83454 * 22 17 15 24 24 N 1.46900 * 110.51103 * 98.54907 * 22 17 15 25 25 H 1.08998 * 109.47516 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47202 * 300.00570 * 1 2 3 27 27 H 1.09006 * 109.47077 * 59.99677 * 1 2 3 28 28 H 1.09000 * 109.47191 * 60.00143 * 3 2 1 29 29 H 1.08997 * 109.46734 * 299.99471 * 3 2 1 30 30 H 1.08995 * 109.47087 * 305.61841 * 4 3 2 31 31 H 1.09001 * 109.46819 * 185.62087 * 4 3 2 32 32 H 1.08992 * 109.47670 * 29.72058 * 6 5 4 33 33 H 1.09003 * 109.47096 * 149.72719 * 6 5 4 34 34 H 0.97004 * 119.99822 * 180.02562 * 10 9 7 35 35 H 1.09000 * 110.37455 * 78.31781 * 20 19 17 36 36 H 1.08997 * 110.37667 * 200.66041 * 20 19 17 37 37 H 1.09001 * 110.51451 * 142.62393 * 21 20 19 38 38 H 1.09001 * 110.51125 * 265.19516 * 21 20 19 39 39 H 1.00897 * 111.00299 * 174.99883 * 24 22 17 40 40 H 1.00907 * 110.99750 * 298.94615 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9778 0.5773 -1.2571 6 6 3.9627 -0.8793 -1.4123 7 6 5.2885 -1.4450 -0.9725 8 1 6.0645 -0.7855 -0.6129 9 6 5.5105 -2.8047 -1.0281 10 7 6.6672 -3.2984 -0.6438 11 14 4.1681 -3.9455 -1.6493 12 1 4.3026 -4.1143 -3.1186 13 1 4.2957 -5.2677 -0.9854 14 1 2.8387 -3.3615 -1.3379 15 6 4.3931 1.3590 -2.2733 16 8 4.8517 0.8560 -3.2771 17 6 4.2878 2.8583 -2.1624 18 1 4.1820 3.3047 -3.1512 19 8 3.1700 3.2232 -1.3238 20 6 3.4461 4.5718 -0.8872 21 6 4.9604 4.5857 -0.5822 22 6 5.5269 3.4324 -1.4403 23 1 5.9850 2.6737 -0.8060 24 7 6.4988 3.9457 -2.4150 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8500 0.5594 0.8363 31 1 3.9784 2.1754 0.1013 32 1 3.1663 -1.3018 -0.7998 33 1 3.7893 -1.1315 -2.4584 34 1 6.8235 -4.2549 -0.6833 35 1 3.2122 5.2826 -1.6797 36 1 2.8758 4.8037 0.0122 37 1 5.4016 5.5366 -0.8811 38 1 5.1384 4.3994 0.4770 39 1 7.2735 4.3955 -1.9508 40 1 6.8212 3.2100 -3.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705390859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:06 Heat of formation + Delta-G solvation = -106.230978 kcal Electronic energy + Delta-G solvation = -22910.290970 eV Core-core repulsion = 19533.098807 eV Total energy + Delta-G solvation = -3377.192163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.43267 -38.14291 -37.42410 -34.94992 -34.27502 -32.50223 -30.41014 -29.67619 -28.81434 -27.01565 -25.88165 -23.52246 -22.53381 -22.23658 -20.83526 -18.89792 -16.94679 -16.79160 -16.72298 -16.22971 -15.85019 -15.35598 -15.25912 -14.86515 -14.64782 -14.28291 -14.09987 -13.90956 -13.68062 -12.83632 -12.65281 -12.28104 -12.01811 -11.91390 -11.70048 -11.58764 -11.48021 -11.42587 -10.98786 -10.80534 -10.77805 -10.32882 -10.02736 -9.78958 -9.46416 -9.31065 -8.97971 -8.83290 -8.48810 -7.62525 -6.00425 -3.97337 3.08345 3.37853 3.43297 3.49043 3.70507 3.96873 4.15794 4.41397 4.49871 4.53203 4.67407 4.87171 5.05743 5.19747 5.34685 5.40101 5.43103 5.52481 5.54873 5.62945 5.66379 5.74195 5.74644 5.80095 5.84691 5.87090 6.00581 6.43679 6.54214 6.98652 7.03787 7.11490 7.33233 7.43658 7.51875 7.73418 8.33107 8.54234 8.92508 9.02076 9.61250 11.13111 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.007568 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.452470 B = 3698.894173 C = 4827.867197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.053 3.947 4 C 0.119 3.881 5 N -0.571 5.571 6 C 0.215 3.785 7 C -0.523 4.523 8 H 0.071 0.929 9 C 0.071 3.929 10 N -0.902 5.902 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.511 3.489 16 O -0.534 6.534 17 C 0.063 3.937 18 H 0.106 0.894 19 O -0.358 6.358 20 C 0.043 3.957 21 C -0.150 4.150 22 C 0.068 3.932 23 H 0.060 0.940 24 N -0.839 5.839 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.344 0.656 40 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 16.717 3.019 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.300 6.300 3 C -0.024 4.024 4 C -0.005 4.005 5 N -0.300 5.300 6 C 0.095 3.905 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.130 4.130 10 N -0.541 5.541 11 Si 0.700 3.300 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.185 1.185 15 C 0.296 3.704 16 O -0.411 6.411 17 C 0.002 3.998 18 H 0.123 0.877 19 O -0.277 6.277 20 C -0.034 4.034 21 C -0.188 4.188 22 C -0.045 4.045 23 H 0.078 0.922 24 N -0.371 5.371 25 H 0.098 0.902 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.156 0.844 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.963 16.396 2.326 18.830 hybrid contribution 0.060 -0.933 0.198 0.955 sum -8.903 15.464 2.524 18.021 Atomic orbital electron populations 1.22656 0.82318 1.02205 0.99166 1.88043 1.18580 1.28167 1.95231 1.23125 0.94784 0.84333 1.00199 1.21669 0.91929 0.99237 0.87662 1.47819 1.61189 1.08461 1.12553 1.19766 0.98176 0.74932 0.97623 1.21325 0.98745 0.92818 1.43234 0.91115 1.24821 0.95457 0.97957 0.94786 1.69902 1.22953 1.12967 1.48296 0.86869 0.83274 0.80352 0.79466 1.20118 1.21212 1.18511 1.19990 0.79272 0.87211 0.83932 1.90721 1.45227 1.74362 1.30835 1.23418 0.86199 0.93805 0.96414 0.87665 1.89345 1.42607 1.29268 1.66483 1.23390 0.94910 0.85134 0.99969 1.23038 0.96355 0.99381 1.00076 1.22597 0.93348 0.95630 0.92902 0.92220 1.58816 1.19691 1.35809 1.22760 0.90160 0.94729 0.94621 0.93673 0.91808 0.90298 0.88602 0.93239 0.95313 0.92733 0.91858 0.88828 0.89426 0.90317 0.84355 0.83259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.56 16 2 O -0.38 -6.78 8.95 -35.23 -0.32 -7.09 16 3 C 0.05 0.82 5.50 37.16 0.20 1.02 16 4 C 0.12 2.07 5.32 -4.04 -0.02 2.05 16 5 N -0.57 -12.42 2.45 -175.06 -0.43 -12.85 16 6 C 0.22 5.60 4.02 -5.19 -0.02 5.58 16 7 C -0.52 -15.53 9.94 -34.44 -0.34 -15.88 16 8 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 10 N -0.90 -28.49 13.96 55.43 0.77 -27.72 16 11 Si 0.87 22.56 27.47 -169.99 -4.67 17.89 16 12 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 15 C 0.51 10.82 6.81 -10.99 -0.07 10.75 16 16 O -0.53 -13.52 16.74 5.56 0.09 -13.43 16 17 C 0.06 0.98 3.16 -27.10 -0.09 0.89 16 18 H 0.11 1.65 8.06 -51.93 -0.42 1.23 16 19 O -0.36 -4.77 5.65 -35.23 -0.20 -4.97 16 20 C 0.04 0.40 7.51 37.93 0.28 0.69 16 21 C -0.15 -1.42 6.48 -25.16 -0.16 -1.59 16 22 C 0.07 0.89 3.07 -66.14 -0.20 0.68 16 23 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 24 N -0.84 -10.02 9.17 -3.34 -0.03 -10.05 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 30 H 0.08 1.47 8.12 -51.93 -0.42 1.05 16 31 H 0.10 1.41 4.32 -51.93 -0.22 1.18 16 32 H 0.05 1.28 5.58 -51.93 -0.29 0.99 16 33 H 0.03 0.80 6.94 -51.93 -0.36 0.44 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.73 7.97 -51.93 -0.41 0.32 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.34 3.30 9.06 -39.29 -0.36 2.94 16 40 H 0.35 4.76 9.06 -39.29 -0.36 4.40 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -35.40 319.92 -5.48 -40.88 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.12 Total: 4.71 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 0.59 Total: 7.81 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.31 Total: -50.62 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.42 Total: -25.50 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.40 -5.48 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705390859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.346 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds