Wall clock time and date at job start Mon Mar 30 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00198 * 2 1 4 4 C 1.53005 * 109.46825 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47219 * 65.61997 * 4 3 2 6 6 C 1.46495 * 119.99646 * 276.91720 * 5 4 3 7 7 C 1.50703 * 109.46865 * 269.72134 * 6 5 4 8 8 H 1.07996 * 120.00106 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99920 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99933 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99905 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47141 * 89.99747 * 11 9 7 13 13 H 1.48502 * 109.46852 * 209.99276 * 11 9 7 14 14 H 1.48498 * 109.47437 * 329.99607 * 11 9 7 15 15 C 1.34768 * 119.99975 * 96.63952 * 5 4 3 16 16 O 1.21281 * 119.99955 * 174.55665 * 15 5 4 17 17 C 1.50703 * 120.00086 * 354.55694 * 15 5 4 18 18 H 1.09002 * 110.33094 * 207.86934 * 17 15 5 19 19 O 1.44422 * 110.37465 * 330.12011 * 17 15 5 20 20 C 1.44417 * 105.27959 * 159.34335 * 19 17 15 21 21 C 1.54479 * 104.80152 * 319.49037 * 20 19 17 22 22 C 1.54481 * 110.37031 * 85.50077 * 17 15 5 23 23 H 1.08993 * 110.51115 * 335.83454 * 22 17 15 24 24 N 1.46900 * 110.51103 * 98.54907 * 22 17 15 25 25 H 1.08998 * 109.47516 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47202 * 300.00570 * 1 2 3 27 27 H 1.09006 * 109.47077 * 59.99677 * 1 2 3 28 28 H 1.09000 * 109.47191 * 60.00143 * 3 2 1 29 29 H 1.08997 * 109.46734 * 299.99471 * 3 2 1 30 30 H 1.08995 * 109.47087 * 305.61841 * 4 3 2 31 31 H 1.09001 * 109.46819 * 185.62087 * 4 3 2 32 32 H 1.08992 * 109.47670 * 29.72058 * 6 5 4 33 33 H 1.09003 * 109.47096 * 149.72719 * 6 5 4 34 34 H 0.97004 * 119.99822 * 180.02562 * 10 9 7 35 35 H 1.09000 * 110.37455 * 78.31781 * 20 19 17 36 36 H 1.08997 * 110.37667 * 200.66041 * 20 19 17 37 37 H 1.09001 * 110.51451 * 142.62393 * 21 20 19 38 38 H 1.09001 * 110.51125 * 265.19516 * 21 20 19 39 39 H 1.00897 * 111.00299 * 174.99883 * 24 22 17 40 40 H 1.00907 * 110.99750 * 298.94615 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9778 0.5773 -1.2571 6 6 3.9627 -0.8793 -1.4123 7 6 5.2885 -1.4450 -0.9725 8 1 6.0645 -0.7855 -0.6129 9 6 5.5105 -2.8047 -1.0281 10 7 6.6672 -3.2984 -0.6438 11 14 4.1681 -3.9455 -1.6493 12 1 4.3026 -4.1143 -3.1186 13 1 4.2957 -5.2677 -0.9854 14 1 2.8387 -3.3615 -1.3379 15 6 4.3931 1.3590 -2.2733 16 8 4.8517 0.8560 -3.2771 17 6 4.2878 2.8583 -2.1624 18 1 4.1820 3.3047 -3.1512 19 8 3.1700 3.2232 -1.3238 20 6 3.4461 4.5718 -0.8872 21 6 4.9604 4.5857 -0.5822 22 6 5.5269 3.4324 -1.4403 23 1 5.9850 2.6737 -0.8060 24 7 6.4988 3.9457 -2.4150 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8500 0.5594 0.8363 31 1 3.9784 2.1754 0.1013 32 1 3.1663 -1.3018 -0.7998 33 1 3.7893 -1.1315 -2.4584 34 1 6.8235 -4.2549 -0.6833 35 1 3.2122 5.2826 -1.6797 36 1 2.8758 4.8037 0.0122 37 1 5.4016 5.5366 -0.8811 38 1 5.1384 4.3994 0.4770 39 1 7.2735 4.3955 -1.9508 40 1 6.8212 3.2100 -3.0259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705390859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:06 Heat of formation + Delta-G solvation = -135.545298 kcal Electronic energy + Delta-G solvation = -22911.562135 eV Core-core repulsion = 19533.098807 eV Total energy + Delta-G solvation = -3378.463327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72937 -39.54136 -38.74408 -36.62475 -35.34471 -34.72438 -31.61290 -31.10492 -30.16677 -28.61582 -27.05836 -24.83055 -24.12000 -23.66692 -21.89206 -20.46473 -19.13113 -18.26145 -18.03974 -17.35427 -17.08463 -16.60767 -16.52455 -16.31480 -15.95883 -15.68515 -15.42088 -15.28605 -15.13254 -14.59631 -14.14712 -13.87754 -13.45488 -13.38909 -13.06301 -12.89233 -12.78480 -12.61613 -12.48544 -12.35766 -12.02831 -11.91953 -11.78267 -11.75209 -10.98849 -10.83284 -10.54474 -10.44532 -9.86505 -9.43712 -8.35468 -6.38647 1.30425 1.32992 1.44868 1.51691 2.19341 2.30468 2.76496 2.97037 3.04949 3.37896 3.44557 3.63815 3.88674 4.01198 4.24808 4.26575 4.42112 4.45260 4.50464 4.58436 4.63479 4.65469 4.70804 4.86815 4.88005 4.92729 4.95065 5.03894 5.06218 5.15722 5.45726 5.55107 5.64436 5.99023 6.21580 6.37877 6.40581 6.60077 6.67586 7.16720 7.30484 8.81402 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.007568 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.452470 B = 3698.894173 C = 4827.867197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.423 6.423 3 C 0.060 3.940 4 C 0.115 3.885 5 N -0.578 5.578 6 C 0.231 3.769 7 C -0.531 4.531 8 H 0.029 0.971 9 C 0.014 3.986 10 N -0.944 5.944 11 Si 0.942 3.058 12 H -0.275 1.275 13 H -0.271 1.271 14 H -0.244 1.244 15 C 0.501 3.499 16 O -0.589 6.589 17 C 0.079 3.921 18 H 0.107 0.893 19 O -0.366 6.366 20 C 0.039 3.961 21 C -0.139 4.139 22 C 0.067 3.933 23 H 0.031 0.969 24 N -0.833 5.833 25 H 0.083 0.917 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.055 0.945 33 H 0.007 0.993 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.358 0.642 40 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 18.721 3.960 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.343 6.343 3 C -0.017 4.017 4 C -0.007 4.007 5 N -0.307 5.307 6 C 0.108 3.892 7 C -0.569 4.569 8 H 0.047 0.953 9 C -0.184 4.184 10 N -0.584 5.584 11 Si 0.765 3.235 12 H -0.201 1.201 13 H -0.196 1.196 14 H -0.168 1.168 15 C 0.288 3.712 16 O -0.470 6.470 17 C 0.018 3.982 18 H 0.124 0.876 19 O -0.285 6.285 20 C -0.037 4.037 21 C -0.177 4.177 22 C -0.046 4.046 23 H 0.049 0.951 24 N -0.365 5.365 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.142 0.858 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.173 0.827 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.256 18.461 3.317 21.875 hybrid contribution 0.829 -1.472 -0.049 1.690 sum -10.428 16.989 3.268 20.200 Atomic orbital electron populations 1.22838 0.80101 1.03034 1.00760 1.87969 1.21146 1.29569 1.95573 1.23083 0.92644 0.83990 1.01965 1.21965 0.94144 0.99755 0.84850 1.47899 1.61365 1.06987 1.14464 1.19320 0.95959 0.77976 0.95912 1.21523 0.99498 0.92764 1.43157 0.95296 1.25763 0.98065 0.99760 0.94834 1.70035 1.25145 1.13742 1.49500 0.85787 0.80610 0.78405 0.78691 1.20051 1.19564 1.16758 1.21007 0.77642 0.89742 0.82778 1.90672 1.47405 1.76115 1.32807 1.23045 0.88436 0.89235 0.97487 0.87565 1.89318 1.41463 1.31755 1.65960 1.23726 0.95112 0.83122 1.01733 1.23041 0.96217 0.98338 1.00090 1.22599 0.92553 0.96602 0.92836 0.95061 1.58847 1.20239 1.35037 1.22392 0.89880 0.92154 0.93886 0.89894 0.91715 0.92192 0.85848 0.92697 0.97493 0.92270 0.90609 0.85546 0.87574 0.88761 0.82733 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 11.01 113.37 1.25 1.94 16 2 O -0.42 -14.30 8.95 -148.98 -1.33 -15.63 16 3 C 0.06 1.70 5.50 71.98 0.40 2.10 16 4 C 0.12 3.92 5.32 86.38 0.46 4.38 16 5 N -0.58 -25.74 2.45 -826.17 -2.03 -27.76 16 6 C 0.23 12.33 4.02 85.64 0.34 12.67 16 7 C -0.53 -32.96 9.94 25.60 0.25 -32.71 16 8 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 9 C 0.01 0.85 5.47 84.66 0.46 1.31 16 10 N -0.94 -61.41 13.96 21.45 0.30 -61.12 16 11 Si 0.94 47.26 27.47 68.60 1.88 49.15 16 12 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.24 -11.50 6.54 99.48 0.65 -10.85 16 15 C 0.50 21.81 6.81 87.66 0.60 22.41 16 16 O -0.59 -31.30 16.74 -3.03 -0.05 -31.35 16 17 C 0.08 2.41 3.16 30.35 0.10 2.51 16 18 H 0.11 3.24 8.06 -2.39 -0.02 3.22 16 19 O -0.37 -8.77 5.65 -148.98 -0.84 -9.61 16 20 C 0.04 0.56 7.51 72.48 0.54 1.11 16 21 C -0.14 -2.13 6.48 31.61 0.20 -1.93 16 22 C 0.07 1.68 3.07 45.93 0.14 1.82 16 23 H 0.03 0.97 7.68 -2.39 -0.02 0.95 16 24 N -0.83 -19.24 9.17 -164.47 -1.51 -20.75 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 1.84 6.34 -2.39 -0.02 1.83 16 30 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 31 H 0.12 3.43 4.32 -2.39 -0.01 3.42 16 32 H 0.06 2.87 5.58 -2.39 -0.01 2.86 16 33 H 0.01 0.40 6.94 -2.39 -0.02 0.39 16 34 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.31 7.97 -2.39 -0.02 1.29 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.36 6.40 9.06 -89.70 -0.81 5.59 16 40 H 0.34 9.42 9.06 -89.69 -0.81 8.61 16 Total: -1.00 -81.39 319.92 0.55 -80.84 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -0.62 Total: 20.63 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 4.75 Total: 15.60 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -3.24 Total: -109.63 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -2.23 Total: -56.59 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.88 Total: 49.15 kcal Total: -81.39 0.55 -80.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705390859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.705 kcal (2) G-P(sol) polarization free energy of solvation -81.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds