Wall clock time and date at job start Mon Mar 30 2020 04:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47199 * 54.99654 * 11 10 9 13 13 N 1.46903 * 109.46983 * 295.00076 * 11 10 9 14 14 C 1.50696 * 109.47146 * 175.00148 * 11 10 9 15 15 O 1.21279 * 120.00286 * 99.99924 * 14 11 10 16 16 N 1.34781 * 119.99816 * 279.99731 * 14 11 10 17 17 C 1.46500 * 119.99797 * 180.02562 * 16 14 11 18 18 H 1.09001 * 109.54531 * 35.18080 * 17 16 14 19 19 C 1.53177 * 109.54260 * 274.99608 * 17 16 14 20 20 C 1.53096 * 109.16052 * 183.15418 * 19 17 16 21 21 O 1.42901 * 109.41380 * 57.61341 * 20 19 17 22 22 C 1.42901 * 114.09823 * 298.84019 * 21 20 19 23 23 C 1.53089 * 109.41678 * 61.15619 * 22 21 20 24 24 H 1.08998 * 109.52624 * 182.48782 * 23 22 21 25 25 O 1.42899 * 109.51991 * 62.29791 * 23 22 21 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.00911 * 110.99831 * 299.99812 * 13 11 10 32 32 H 1.00898 * 111.00464 * 63.94927 * 13 11 10 33 33 H 0.97002 * 119.99995 * 0.02562 * 16 14 11 34 34 H 1.08994 * 109.52542 * 303.06175 * 19 17 16 35 35 H 1.09008 * 109.51986 * 63.18704 * 19 17 16 36 36 H 1.09000 * 109.47436 * 177.59314 * 20 19 17 37 37 H 1.08998 * 109.48267 * 297.61464 * 20 19 17 38 38 H 1.08996 * 109.48011 * 181.14717 * 22 21 20 39 39 H 1.09007 * 109.47650 * 301.16382 * 22 21 20 40 40 H 0.96708 * 113.99837 * 60.31653 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7281 -5.1189 1.2538 14 6 2.4549 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 3.9052 -7.5698 -1.4517 18 1 3.6421 -8.3520 -0.7397 19 6 5.3232 -7.0683 -1.1614 20 6 6.3142 -8.2170 -1.3664 21 8 6.1952 -8.7147 -2.7007 22 6 4.9039 -9.2403 -3.0143 23 6 3.8561 -8.1328 -2.8755 24 1 2.8651 -8.5422 -3.0712 25 8 4.1368 -7.0900 -3.8113 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 1.3477 -5.1034 2.0501 32 1 0.0233 -4.4009 1.3301 33 1 2.6933 -5.9594 -2.1197 34 1 5.5668 -6.2514 -1.8406 35 1 5.3810 -6.7154 -0.1316 36 1 7.3292 -7.8549 -1.2027 37 1 6.0951 -9.0168 -0.6590 38 1 4.9029 -9.6155 -4.0377 39 1 4.6663 -10.0538 -2.3287 40 1 4.1224 -7.3760 -4.7350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707009863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:50 Heat of formation + Delta-G solvation = -148.565968 kcal Electronic energy + Delta-G solvation = -21599.454425 eV Core-core repulsion = 18220.426479 eV Total energy + Delta-G solvation = -3379.027946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42411 -39.07730 -36.50233 -35.56412 -34.67145 -32.84088 -31.48916 -30.36756 -29.86828 -26.76553 -24.96949 -23.78031 -23.36542 -20.71272 -20.54594 -19.70027 -17.69839 -17.28223 -17.00825 -16.26839 -16.10959 -15.65192 -15.07904 -15.06112 -14.49396 -14.48479 -14.10859 -13.93342 -13.41262 -13.16833 -12.98261 -12.86635 -12.25786 -12.15204 -11.76192 -11.61956 -11.50527 -11.07962 -10.93847 -10.87442 -10.67204 -10.49424 -9.97593 -9.95540 -9.67733 -9.26508 -9.17695 -8.96547 -8.42949 -8.18192 -6.07623 -4.10514 2.92061 3.19281 3.28174 3.34718 3.38251 3.51073 3.93868 4.34833 4.40557 4.47511 4.56527 4.93135 4.94356 5.02495 5.13682 5.19545 5.25870 5.27795 5.28731 5.46798 5.59709 5.65531 5.77818 5.78680 6.14990 6.31252 6.52406 6.55807 6.84043 6.89138 7.34388 7.45103 7.52834 7.62947 7.74267 7.89391 7.91314 8.32388 8.47411 8.95403 9.54323 11.03340 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.003876 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.487084 B = 7222.791115 C = 7724.371249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.286 1.286 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.137 4.137 11 C 0.075 3.925 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.542 6.542 16 N -0.724 5.724 17 C 0.156 3.844 18 H 0.096 0.904 19 C -0.165 4.165 20 C 0.064 3.936 21 O -0.374 6.374 22 C 0.033 3.967 23 C 0.063 3.937 24 H 0.071 0.929 25 O -0.550 6.550 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.345 0.655 32 H 0.354 0.646 33 H 0.408 0.592 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -18.193 -7.066 20.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.211 1.211 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.177 4.177 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.313 3.687 15 O -0.418 6.418 16 N -0.377 5.377 17 C 0.051 3.949 18 H 0.114 0.886 19 C -0.204 4.204 20 C -0.013 4.013 21 O -0.292 6.292 22 C -0.045 4.045 23 C 0.003 3.997 24 H 0.089 0.911 25 O -0.356 6.356 26 H 0.071 0.929 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.243 0.757 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 7.732 -18.881 -6.204 21.325 hybrid contribution 0.407 1.857 -0.510 1.968 sum 8.139 -17.024 -6.713 20.028 Atomic orbital electron populations 1.69952 1.06022 1.26761 1.50521 1.25011 0.94866 0.99298 0.95126 0.86581 0.79863 0.83344 0.78163 1.20627 1.19861 1.21145 1.21185 0.93033 0.90899 1.51030 0.92722 1.19103 0.93716 0.91127 0.97327 1.22372 0.99869 0.93912 1.01511 1.21463 0.94672 0.92324 0.95549 0.88627 1.58754 1.18453 1.55869 1.03203 1.20945 0.80883 0.84383 0.82465 1.90618 1.60734 1.53353 1.37068 1.45955 1.46276 1.34951 1.10484 1.20887 0.89587 0.90379 0.94067 0.88574 1.22567 0.94323 0.99900 1.03623 1.22606 1.00188 0.95142 0.83390 1.87952 1.30341 1.79967 1.30959 1.23273 0.84125 0.94944 1.02181 1.22738 0.97807 0.89038 0.90105 0.91139 1.86556 1.94153 1.35864 1.18980 0.92897 0.96429 0.96322 0.92465 0.92741 0.84180 0.83063 0.75684 0.89754 0.90170 0.88413 0.93005 0.88219 0.92074 0.77251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.60 4.74 -27.89 -0.13 0.47 16 10 C -0.14 -2.74 4.78 -26.73 -0.13 -2.87 16 11 C 0.08 1.30 3.21 -68.86 -0.22 1.08 16 12 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 13 N -0.83 -14.48 8.94 -5.65 -0.05 -14.53 16 14 C 0.53 8.78 7.04 -10.99 -0.08 8.71 16 15 O -0.54 -10.43 15.92 5.56 0.09 -10.34 16 16 N -0.72 -9.79 5.05 -53.63 -0.27 -10.06 16 17 C 0.16 1.83 2.32 -67.75 -0.16 1.67 16 18 H 0.10 1.19 7.59 -51.93 -0.39 0.80 16 19 C -0.17 -1.98 5.56 -26.59 -0.15 -2.13 16 20 C 0.06 0.63 6.84 37.21 0.25 0.89 16 21 O -0.37 -3.91 10.70 -42.73 -0.46 -4.37 16 22 C 0.03 0.25 6.49 37.20 0.24 0.49 16 23 C 0.06 0.55 3.45 -26.59 -0.09 0.46 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 O -0.55 -5.10 12.11 -42.73 -0.52 -5.62 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.45 6.87 -51.92 -0.36 0.09 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.35 6.09 8.58 -39.29 -0.34 5.75 16 32 H 0.35 6.18 7.55 -39.29 -0.30 5.89 16 33 H 0.41 5.16 8.10 -40.82 -0.33 4.83 16 34 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 35 H 0.08 1.08 8.14 -51.92 -0.42 0.65 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 40 H 0.38 1.93 9.09 45.56 0.41 2.35 16 LS Contribution 328.94 15.07 4.96 4.96 Total: -1.00 -32.97 328.94 -6.88 -39.85 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.48 Total: 13.65 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.87 Total: -4.51 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.41 Total: -50.06 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.89 Total: -20.33 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.97 -6.88 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707009863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.712 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds