Wall clock time and date at job start Mon Mar 30 2020 04:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47199 * 54.99654 * 11 10 9 13 13 N 1.46903 * 109.46983 * 295.00076 * 11 10 9 14 14 C 1.50696 * 109.47146 * 175.00148 * 11 10 9 15 15 O 1.21279 * 120.00286 * 99.99924 * 14 11 10 16 16 N 1.34781 * 119.99816 * 279.99731 * 14 11 10 17 17 C 1.46500 * 119.99797 * 180.02562 * 16 14 11 18 18 H 1.09001 * 109.54531 * 35.18080 * 17 16 14 19 19 C 1.53177 * 109.54260 * 274.99608 * 17 16 14 20 20 C 1.53096 * 109.16052 * 183.15418 * 19 17 16 21 21 O 1.42901 * 109.41380 * 57.61341 * 20 19 17 22 22 C 1.42901 * 114.09823 * 298.84019 * 21 20 19 23 23 C 1.53089 * 109.41678 * 61.15619 * 22 21 20 24 24 H 1.08998 * 109.52624 * 182.48782 * 23 22 21 25 25 O 1.42899 * 109.51991 * 62.29791 * 23 22 21 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 1.00911 * 110.99831 * 299.99812 * 13 11 10 32 32 H 1.00898 * 111.00464 * 63.94927 * 13 11 10 33 33 H 0.97002 * 119.99995 * 0.02562 * 16 14 11 34 34 H 1.08994 * 109.52542 * 303.06175 * 19 17 16 35 35 H 1.09008 * 109.51986 * 63.18704 * 19 17 16 36 36 H 1.09000 * 109.47436 * 177.59314 * 20 19 17 37 37 H 1.08998 * 109.48267 * 297.61464 * 20 19 17 38 38 H 1.08996 * 109.48011 * 181.14717 * 22 21 20 39 39 H 1.09007 * 109.47650 * 301.16382 * 22 21 20 40 40 H 0.96708 * 113.99837 * 60.31653 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 1 0.7884 -5.0068 -0.8432 13 7 0.7281 -5.1189 1.2538 14 6 2.4549 -6.1298 -0.1250 15 8 2.7864 -6.7536 0.8608 16 7 2.9582 -6.4586 -1.3313 17 6 3.9052 -7.5698 -1.4517 18 1 3.6421 -8.3520 -0.7397 19 6 5.3232 -7.0683 -1.1614 20 6 6.3142 -8.2170 -1.3664 21 8 6.1952 -8.7147 -2.7007 22 6 4.9039 -9.2403 -3.0143 23 6 3.8561 -8.1328 -2.8755 24 1 2.8651 -8.5422 -3.0712 25 8 4.1368 -7.0900 -3.8113 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 1.3477 -5.1034 2.0501 32 1 0.0233 -4.4009 1.3301 33 1 2.6933 -5.9594 -2.1197 34 1 5.5668 -6.2514 -1.8406 35 1 5.3810 -6.7154 -0.1316 36 1 7.3292 -7.8549 -1.2027 37 1 6.0951 -9.0168 -0.6590 38 1 4.9029 -9.6155 -4.0377 39 1 4.6663 -10.0538 -2.3287 40 1 4.1224 -7.3760 -4.7350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707009863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:49 Heat of formation + Delta-G solvation = -176.890983 kcal Electronic energy + Delta-G solvation = -21600.682690 eV Core-core repulsion = 18220.426479 eV Total energy + Delta-G solvation = -3380.256211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43452 -40.16641 -37.30765 -37.05450 -35.77868 -34.84821 -32.49631 -31.70070 -31.08262 -28.31332 -26.35869 -24.81009 -24.53104 -22.39484 -21.45697 -21.02357 -18.94112 -18.32849 -18.03625 -17.95393 -17.01441 -16.60467 -16.41514 -16.15175 -15.98420 -15.80204 -15.41749 -15.16151 -14.62127 -14.59901 -14.20463 -13.98737 -13.83943 -13.47186 -13.02794 -12.96154 -12.71072 -12.53900 -12.44717 -12.30259 -11.85285 -11.77249 -11.68551 -11.32031 -11.22019 -10.82801 -10.57180 -10.33848 -10.09960 -9.66277 -8.22611 -6.33015 1.39084 1.39207 1.50170 1.57603 2.05869 2.39239 2.84823 3.10984 3.23974 3.64259 3.70882 3.77061 3.78028 3.80183 4.07641 4.10630 4.22698 4.27785 4.42526 4.52960 4.61809 4.64600 4.68906 4.78417 4.83049 4.93835 5.05932 5.17091 5.43989 5.45040 5.63698 5.79091 6.05028 6.15358 6.20154 6.46103 6.51532 6.81980 6.88705 7.20178 7.36077 8.88219 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.003876 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.487084 B = 7222.791115 C = 7724.371249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.108 0.892 13 N -0.828 5.828 14 C 0.528 3.472 15 O -0.569 6.569 16 N -0.710 5.710 17 C 0.148 3.852 18 H 0.091 0.909 19 C -0.160 4.160 20 C 0.068 3.932 21 O -0.389 6.389 22 C 0.030 3.970 23 C 0.071 3.929 24 H 0.090 0.910 25 O -0.570 6.570 26 H 0.264 0.736 27 H 0.004 0.996 28 H 0.002 0.998 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.344 0.656 32 H 0.353 0.647 33 H 0.413 0.587 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 -18.972 -8.208 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.191 1.191 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.126 0.874 13 N -0.359 5.359 14 C 0.314 3.686 15 O -0.448 6.448 16 N -0.362 5.362 17 C 0.043 3.957 18 H 0.109 0.891 19 C -0.199 4.199 20 C -0.010 4.010 21 O -0.308 6.308 22 C -0.048 4.048 23 C 0.011 3.989 24 H 0.108 0.892 25 O -0.378 6.378 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.250 0.750 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.145 0.855 39 H 0.092 0.908 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 8.536 -19.680 -7.393 22.690 hybrid contribution 0.144 2.076 -0.193 2.090 sum 8.680 -17.604 -7.586 21.042 Atomic orbital electron populations 1.70059 1.07462 1.27798 1.51266 1.25858 0.95743 1.02943 0.94664 0.85538 0.78721 0.78946 0.78401 1.20004 1.19116 1.20516 1.21612 0.93290 0.92526 1.51015 0.92893 1.18965 0.93994 0.91947 0.95759 1.22114 0.98775 0.93918 1.01143 1.21394 0.94776 0.91287 0.95975 0.87426 1.58772 1.18325 1.55593 1.03256 1.20723 0.80735 0.84050 0.83042 1.90607 1.61703 1.54349 1.38143 1.45890 1.45689 1.35085 1.09560 1.21112 0.88692 0.89470 0.96446 0.89066 1.22479 0.95327 1.00343 1.01783 1.22591 0.99926 0.94624 0.83814 1.87934 1.31927 1.80051 1.30878 1.23503 0.82520 0.94586 1.04149 1.22676 0.99305 0.88884 0.88040 0.89242 1.86506 1.94280 1.36595 1.20466 0.92679 0.97786 0.97970 0.92059 0.93779 0.84333 0.83241 0.75009 0.91381 0.92263 0.87672 0.91862 0.85508 0.90808 0.75071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.52 4.74 29.85 0.14 1.66 16 10 C -0.12 -4.81 4.78 30.59 0.15 -4.66 16 11 C 0.08 2.78 3.21 44.17 0.14 2.92 16 12 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 13 N -0.83 -28.86 8.94 -171.80 -1.54 -30.40 16 14 C 0.53 17.37 7.04 87.66 0.62 17.99 16 15 O -0.57 -21.85 15.92 -3.03 -0.05 -21.89 16 16 N -0.71 -18.56 5.05 -441.97 -2.23 -20.80 16 17 C 0.15 3.29 2.32 45.11 0.10 3.39 16 18 H 0.09 2.16 7.59 -2.39 -0.02 2.14 16 19 C -0.16 -3.77 5.56 30.69 0.17 -3.60 16 20 C 0.07 1.25 6.84 72.01 0.49 1.75 16 21 O -0.39 -7.31 10.70 -141.81 -1.52 -8.83 16 22 C 0.03 0.37 6.49 72.01 0.47 0.84 16 23 C 0.07 1.07 3.45 30.68 0.11 1.17 16 24 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 25 O -0.57 -9.33 12.11 -141.81 -1.72 -11.05 16 26 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.00 0.20 6.87 -2.38 -0.02 0.19 16 28 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.34 12.22 8.58 -89.68 -0.77 11.45 16 32 H 0.35 12.43 7.55 -89.70 -0.68 11.76 16 33 H 0.41 9.93 8.10 -92.71 -0.75 9.18 16 34 H 0.07 1.81 7.83 -2.39 -0.02 1.79 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.88 16 39 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.40 3.00 9.09 -74.05 -0.67 2.33 16 Total: -1.00 -70.04 328.94 -3.45 -73.48 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -1.79 Total: 35.97 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.08 Total: -7.99 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -3.48 Total: -105.54 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -3.28 Total: -41.77 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.04 -3.45 -73.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707009863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.409 kcal (2) G-P(sol) polarization free energy of solvation -70.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds