Wall clock time and date at job start Mon Mar 30 2020 04:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48500 * 109.46956 * 239.99942 * 3 2 1 5 5 H 1.48492 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46831 * 120.00013 * 3 2 1 7 7 C 1.37878 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.46501 * 119.99848 * 180.02562 * 16 14 11 18 18 H 1.09005 * 109.54295 * 324.99641 * 17 16 14 19 19 C 1.53171 * 109.54721 * 85.17403 * 17 16 14 20 20 C 1.53112 * 109.16048 * 176.75684 * 19 17 16 21 21 O 1.42902 * 109.48623 * 302.52852 * 20 19 17 22 22 C 1.42902 * 114.10061 * 61.10749 * 21 20 19 23 23 C 1.53097 * 109.41549 * 298.84697 * 22 21 20 24 24 H 1.09001 * 109.51696 * 297.69678 * 23 22 21 25 25 O 1.42902 * 109.57207 * 177.54281 * 23 22 21 26 26 H 0.97001 * 119.99959 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 28 28 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 29 29 H 1.08997 * 109.47653 * 60.00089 * 10 9 7 30 30 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 31 31 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 32 32 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 33 33 H 0.96989 * 120.00118 * 359.97438 * 16 14 11 34 34 H 1.08997 * 109.52839 * 296.75284 * 19 17 16 35 35 H 1.09009 * 109.52283 * 56.94247 * 19 17 16 36 36 H 1.08997 * 109.48202 * 182.50071 * 20 19 17 37 37 H 1.09000 * 109.40158 * 62.51076 * 20 19 17 38 38 H 1.08997 * 109.48815 * 178.85787 * 22 21 20 39 39 H 1.09006 * 109.47912 * 58.81967 * 22 21 20 40 40 H 0.96698 * 114.00000 * 60.28035 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8431 13 7 0.7280 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4585 -1.3313 17 6 3.9051 -7.5697 -1.4518 18 1 4.5403 -7.6050 -0.5667 19 6 3.1351 -8.8874 -1.5827 20 6 4.1302 -10.0325 -1.7892 21 8 4.9265 -9.7693 -2.9463 22 6 5.7051 -8.5742 -2.8592 23 6 4.7733 -7.3703 -2.6979 24 1 4.1345 -7.2838 -3.5769 25 8 5.5501 -6.1796 -2.5531 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.1637 -5.9553 1.2510 32 1 1.3477 -5.1034 2.0500 33 1 2.6926 -5.9599 -2.1198 34 1 2.5580 -9.0639 -0.6751 35 1 2.4621 -8.8326 -2.4385 36 1 3.5859 -10.9667 -1.9274 37 1 4.7756 -10.1136 -0.9145 38 1 6.2954 -8.4578 -3.7681 39 1 6.3711 -8.6362 -1.9985 40 1 6.1248 -5.9909 -3.3075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707009864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:52 Heat of formation + Delta-G solvation = -148.244264 kcal Electronic energy + Delta-G solvation = -21511.734923 eV Core-core repulsion = 18132.720927 eV Total energy + Delta-G solvation = -3379.013996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49958 -39.18971 -36.86114 -35.37129 -34.80411 -32.77689 -31.66432 -30.23490 -30.04222 -26.65377 -25.02331 -23.77363 -23.20382 -20.86143 -20.61293 -19.71664 -17.80803 -17.35435 -16.95842 -16.57722 -16.17602 -15.59059 -15.45927 -15.21966 -14.52678 -14.35061 -14.21524 -13.92911 -13.59713 -13.40917 -12.98708 -12.59111 -12.28416 -11.99138 -11.84900 -11.74543 -11.49709 -10.85660 -10.80664 -10.71172 -10.64608 -10.54956 -10.18138 -9.84651 -9.74881 -9.34418 -9.09192 -8.97885 -8.32805 -8.18075 -5.91523 -3.93487 2.77879 3.14378 3.33634 3.37824 3.42057 3.44873 3.82645 4.27559 4.38934 4.52098 4.62389 4.73247 4.77156 4.84020 4.97251 5.14894 5.22391 5.25445 5.32915 5.43870 5.47642 5.55293 5.63595 5.84510 5.87496 6.42215 6.50303 6.66573 6.70167 7.12473 7.28322 7.38953 7.61077 7.78336 7.81569 7.98793 8.15573 8.32961 8.51372 9.14318 9.69426 11.19413 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.003827 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.258038 B = 7314.219946 C = 8088.475868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.079 3.921 12 H 0.097 0.903 13 N -0.807 5.807 14 C 0.486 3.514 15 O -0.556 6.556 16 N -0.718 5.718 17 C 0.150 3.850 18 H 0.093 0.907 19 C -0.164 4.164 20 C 0.061 3.939 21 O -0.377 6.377 22 C 0.034 3.966 23 C 0.064 3.936 24 H 0.070 0.930 25 O -0.549 6.549 26 H 0.260 0.740 27 H 0.012 0.988 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.333 0.667 32 H 0.348 0.652 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.419 -19.593 -7.548 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.037 4.037 12 H 0.115 0.885 13 N -0.334 5.334 14 C 0.272 3.728 15 O -0.434 6.434 16 N -0.369 5.369 17 C 0.044 3.956 18 H 0.111 0.889 19 C -0.203 4.203 20 C -0.017 4.017 21 O -0.295 6.295 22 C -0.044 4.044 23 C 0.004 3.996 24 H 0.088 0.912 25 O -0.355 6.355 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.162 0.838 33 H 0.238 0.762 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.817 -19.302 -6.605 21.847 hybrid contribution 1.229 0.419 -0.631 1.444 sum 9.047 -18.883 -7.235 22.153 Atomic orbital electron populations 1.69965 1.05949 1.26492 1.50868 1.24987 0.94805 0.99029 0.95498 0.86706 0.79599 0.83410 0.78535 1.20375 1.21348 1.20318 1.21254 0.92893 0.91341 1.50572 0.93026 1.19010 0.93548 0.89849 0.98137 1.21650 0.98795 0.92060 1.00795 1.21832 0.93480 0.93330 0.95019 0.88509 1.59006 1.26932 1.44190 1.03303 1.22768 0.82112 0.85468 0.82405 1.90631 1.61142 1.54486 1.37118 1.46054 1.46074 1.34231 1.10586 1.20898 0.90215 0.86500 0.97976 0.88906 1.22645 0.99436 0.94247 1.03980 1.22650 0.92600 0.98020 0.88391 1.87953 1.59855 1.41509 1.40227 1.23319 0.93423 0.84396 1.03267 1.22735 0.93029 0.85698 0.98148 0.91212 1.86671 1.59913 1.42118 1.46788 0.93071 0.96920 0.94712 0.92907 0.92695 0.85550 0.83832 0.76177 0.89475 0.90460 0.88071 0.92574 0.88197 0.91965 0.77179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.82 4.86 -27.89 -0.14 0.69 16 10 C -0.09 -1.97 4.78 -26.73 -0.13 -2.10 16 11 C 0.08 1.35 3.15 -68.86 -0.22 1.14 16 12 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 13 N -0.81 -13.81 8.44 -5.65 -0.05 -13.85 16 14 C 0.49 7.79 7.04 -10.99 -0.08 7.72 16 15 O -0.56 -10.27 15.91 5.55 0.09 -10.19 16 16 N -0.72 -9.32 5.01 -53.63 -0.27 -9.59 16 17 C 0.15 1.72 2.22 -67.75 -0.15 1.57 16 18 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 19 C -0.16 -1.58 5.72 -26.59 -0.15 -1.73 16 20 C 0.06 0.50 6.84 37.22 0.25 0.76 16 21 O -0.38 -3.51 10.77 -35.23 -0.38 -3.89 16 22 C 0.03 0.27 6.47 37.21 0.24 0.51 16 23 C 0.06 0.59 3.17 -26.59 -0.08 0.50 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 O -0.55 -5.55 13.25 -35.23 -0.47 -6.02 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.33 4.90 9.06 -39.29 -0.36 4.55 16 32 H 0.35 6.07 8.58 -39.29 -0.34 5.74 16 33 H 0.40 4.65 8.60 -40.82 -0.35 4.30 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.38 2.05 9.09 45.56 0.41 2.46 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -34.55 332.62 -6.82 -41.37 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.62 Total: 11.29 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.86 Total: -4.66 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.42 Total: -49.86 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.76 Total: -20.09 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.55 -6.82 -41.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707009864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.871 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds