Wall clock time and date at job start Mon Mar 30 2020 04:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99883 * 2 1 4 4 H 1.48500 * 109.46956 * 239.99942 * 3 2 1 5 5 H 1.48492 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46831 * 120.00013 * 3 2 1 7 7 C 1.37878 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99954 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00375 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47452 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47332 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47352 * 54.99600 * 11 10 9 13 13 N 1.46905 * 109.46947 * 294.99830 * 11 10 9 14 14 C 1.50697 * 109.47213 * 174.99878 * 11 10 9 15 15 O 1.21286 * 119.99959 * 100.00048 * 14 11 10 16 16 N 1.34775 * 119.99977 * 279.99847 * 14 11 10 17 17 C 1.46501 * 119.99848 * 180.02562 * 16 14 11 18 18 H 1.09005 * 109.54295 * 324.99641 * 17 16 14 19 19 C 1.53171 * 109.54721 * 85.17403 * 17 16 14 20 20 C 1.53112 * 109.16048 * 176.75684 * 19 17 16 21 21 O 1.42902 * 109.48623 * 302.52852 * 20 19 17 22 22 C 1.42902 * 114.10061 * 61.10749 * 21 20 19 23 23 C 1.53097 * 109.41549 * 298.84697 * 22 21 20 24 24 H 1.09001 * 109.51696 * 297.69678 * 23 22 21 25 25 O 1.42902 * 109.57207 * 177.54281 * 23 22 21 26 26 H 0.97001 * 119.99959 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47129 * 60.00289 * 9 7 2 28 28 H 1.09004 * 109.47511 * 300.00408 * 9 7 2 29 29 H 1.08997 * 109.47653 * 60.00089 * 10 9 7 30 30 H 1.09001 * 109.47049 * 300.00036 * 10 9 7 31 31 H 1.00901 * 110.99869 * 176.04901 * 13 11 10 32 32 H 1.00896 * 110.99543 * 300.00023 * 13 11 10 33 33 H 0.96989 * 120.00118 * 359.97438 * 16 14 11 34 34 H 1.08997 * 109.52839 * 296.75284 * 19 17 16 35 35 H 1.09009 * 109.52283 * 56.94247 * 19 17 16 36 36 H 1.08997 * 109.48202 * 182.50071 * 20 19 17 37 37 H 1.09000 * 109.40158 * 62.51076 * 20 19 17 38 38 H 1.08997 * 109.48815 * 178.85787 * 22 21 20 39 39 H 1.09006 * 109.47912 * 58.81967 * 22 21 20 40 40 H 0.96698 * 114.00000 * 60.28035 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 1 0.7883 -5.0068 -0.8431 13 7 0.7280 -5.1189 1.2538 14 6 2.4548 -6.1298 -0.1250 15 8 2.7863 -6.7536 0.8608 16 7 2.9580 -6.4585 -1.3313 17 6 3.9051 -7.5697 -1.4518 18 1 4.5403 -7.6050 -0.5667 19 6 3.1351 -8.8874 -1.5827 20 6 4.1302 -10.0325 -1.7892 21 8 4.9265 -9.7693 -2.9463 22 6 5.7051 -8.5742 -2.8592 23 6 4.7733 -7.3703 -2.6979 24 1 4.1345 -7.2838 -3.5769 25 8 5.5501 -6.1796 -2.5531 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8894 30 1 2.8718 -3.6043 -0.8905 31 1 0.1637 -5.9553 1.2510 32 1 1.3477 -5.1034 2.0500 33 1 2.6926 -5.9599 -2.1198 34 1 2.5580 -9.0639 -0.6751 35 1 2.4621 -8.8326 -2.4385 36 1 3.5859 -10.9667 -1.9274 37 1 4.7756 -10.1136 -0.9145 38 1 6.2954 -8.4578 -3.7681 39 1 6.3711 -8.6362 -1.9985 40 1 6.1248 -5.9909 -3.3075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707009864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:52 Heat of formation + Delta-G solvation = -178.735897 kcal Electronic energy + Delta-G solvation = -21513.057139 eV Core-core repulsion = 18132.720927 eV Total energy + Delta-G solvation = -3380.336212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49782 -40.21632 -37.60018 -36.86532 -35.95052 -34.81539 -32.58031 -31.93015 -30.92903 -28.25928 -26.33656 -24.71625 -24.45416 -22.34593 -21.70510 -21.06280 -18.76638 -18.50036 -18.07654 -17.98933 -17.26435 -16.97721 -16.59974 -16.32487 -16.07018 -15.59569 -15.28949 -15.00491 -14.90389 -14.31166 -14.25821 -13.90183 -13.76513 -13.42473 -13.35992 -12.77740 -12.61971 -12.52615 -12.45222 -12.26574 -11.79260 -11.67074 -11.47952 -11.43905 -11.26914 -11.02557 -10.57381 -10.48002 -10.19139 -9.62047 -8.13680 -6.24118 1.41574 1.44728 1.47939 1.52804 2.07676 2.44963 2.68201 3.12969 3.19091 3.53498 3.57362 3.70297 3.79820 3.88508 4.04981 4.08736 4.09628 4.27204 4.31035 4.48711 4.61633 4.64684 4.77223 4.77701 4.89755 4.93714 5.03733 5.24098 5.37272 5.56561 5.83823 5.98089 6.03223 6.07808 6.30691 6.41481 6.52571 6.79435 6.93887 7.11218 7.43858 8.97370 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.026553 B = 0.003827 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.258038 B = 7314.219946 C = 8088.475868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.080 4.080 11 C 0.087 3.913 12 H 0.111 0.889 13 N -0.818 5.818 14 C 0.491 3.509 15 O -0.582 6.582 16 N -0.705 5.705 17 C 0.143 3.857 18 H 0.065 0.935 19 C -0.156 4.156 20 C 0.062 3.938 21 O -0.385 6.385 22 C 0.036 3.964 23 C 0.071 3.929 24 H 0.085 0.915 25 O -0.573 6.573 26 H 0.262 0.738 27 H -0.005 1.005 28 H 0.006 0.994 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.347 0.653 32 H 0.345 0.655 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.573 -20.012 -8.985 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.119 4.119 11 C -0.029 4.029 12 H 0.129 0.871 13 N -0.347 5.347 14 C 0.277 3.723 15 O -0.463 6.463 16 N -0.356 5.356 17 C 0.038 3.962 18 H 0.083 0.917 19 C -0.195 4.195 20 C -0.015 4.015 21 O -0.304 6.304 22 C -0.042 4.042 23 C 0.011 3.989 24 H 0.102 0.898 25 O -0.382 6.382 26 H 0.071 0.929 27 H 0.013 0.987 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.249 0.751 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.145 0.855 39 H 0.075 0.925 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.992 -19.740 -8.091 23.152 hybrid contribution 0.871 0.536 -0.197 1.042 sum 9.863 -19.204 -8.288 23.125 Atomic orbital electron populations 1.70095 1.07617 1.27613 1.51618 1.25897 0.95716 1.03009 0.94899 0.85585 0.78345 0.78559 0.79042 1.19060 1.20790 1.19669 1.21699 0.93301 0.92812 1.50607 0.92800 1.18817 0.93816 0.91261 0.95785 1.21365 0.97676 0.92285 1.00540 1.21619 0.93686 0.92000 0.95599 0.87135 1.58976 1.27190 1.45289 1.03202 1.22364 0.81911 0.85094 0.82975 1.90623 1.61997 1.55420 1.38210 1.45972 1.45385 1.34378 1.09866 1.21085 0.90118 0.86767 0.98252 0.91703 1.22565 0.99572 0.93688 1.03698 1.22714 0.92352 0.98163 0.88289 1.87949 1.59987 1.41974 1.40491 1.23403 0.93009 0.83320 1.04451 1.22688 0.93107 0.86117 0.97012 0.89758 1.86620 1.60588 1.42473 1.48511 0.92882 0.98667 0.97562 0.94255 0.91754 0.83976 0.84199 0.75132 0.90844 0.89452 0.86135 0.92691 0.85544 0.92452 0.74862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 9 C 0.04 2.14 4.86 29.84 0.15 2.28 16 10 C -0.08 -3.35 4.78 30.59 0.15 -3.20 16 11 C 0.09 2.94 3.15 44.17 0.14 3.08 16 12 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 13 N -0.82 -28.19 8.44 -171.80 -1.45 -29.64 16 14 C 0.49 15.53 7.04 87.66 0.62 16.15 16 15 O -0.58 -21.58 15.91 -3.05 -0.05 -21.63 16 16 N -0.71 -17.57 5.01 -441.97 -2.21 -19.79 16 17 C 0.14 3.15 2.22 45.11 0.10 3.25 16 18 H 0.06 1.82 7.58 -2.38 -0.02 1.80 16 19 C -0.16 -2.80 5.72 30.69 0.18 -2.62 16 20 C 0.06 0.92 6.84 72.02 0.49 1.41 16 21 O -0.39 -6.27 10.77 -148.98 -1.60 -7.87 16 22 C 0.04 0.48 6.47 72.01 0.47 0.95 16 23 C 0.07 1.15 3.17 30.69 0.10 1.25 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 O -0.57 -10.53 13.25 -148.98 -1.97 -12.51 16 26 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 27 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.01 0.35 7.75 -2.38 -0.02 0.33 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 31 H 0.35 10.15 9.06 -89.69 -0.81 9.33 16 32 H 0.34 12.25 8.58 -89.70 -0.77 11.48 16 33 H 0.41 8.83 8.60 -92.72 -0.80 8.03 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.40 3.40 9.09 -74.06 -0.67 2.73 16 Total: -1.00 -74.14 332.62 -3.88 -78.02 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -1.98 Total: 31.50 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 3.07 Total: -8.16 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -3.38 Total: -106.20 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -3.63 Total: -42.00 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.14 -3.88 -78.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707009864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.712 kcal (2) G-P(sol) polarization free energy of solvation -74.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds