Wall clock time and date at job start Mon Mar 30 2020 04:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47507 * 299.99950 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00324 * 3 2 1 7 7 C 1.37871 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00377 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47505 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47120 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47212 * 55.00262 * 11 10 9 13 13 N 1.46898 * 109.47205 * 294.99755 * 11 10 9 14 14 C 1.50706 * 109.47002 * 174.99524 * 11 10 9 15 15 O 1.21281 * 119.99699 * 99.99942 * 14 11 10 16 16 N 1.34773 * 120.00080 * 280.00433 * 14 11 10 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 11 18 18 H 1.09003 * 109.54042 * 324.72289 * 17 16 14 19 19 C 1.53179 * 109.54541 * 84.89501 * 17 16 14 20 20 C 1.53100 * 109.16012 * 62.89044 * 19 17 16 21 21 O 1.42900 * 109.41416 * 57.60420 * 20 19 17 22 22 C 1.42903 * 114.10421 * 298.84356 * 21 20 19 23 23 C 1.53176 * 109.54107 * 204.54673 * 17 16 14 24 24 H 1.09004 * 109.51897 * 177.20745 * 23 17 16 25 25 O 1.42890 * 109.52733 * 57.01829 * 23 17 16 26 26 H 0.97002 * 120.00399 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47312 * 59.99527 * 9 7 2 28 28 H 1.09009 * 109.46877 * 300.00526 * 9 7 2 29 29 H 1.08992 * 109.47209 * 59.99690 * 10 9 7 30 30 H 1.09005 * 109.46612 * 299.99936 * 10 9 7 31 31 H 1.00902 * 110.99885 * 300.00050 * 13 11 10 32 32 H 1.00894 * 110.99573 * 63.95383 * 13 11 10 33 33 H 0.97005 * 120.00161 * 359.72088 * 16 14 11 34 34 H 1.08996 * 109.52188 * 182.79073 * 19 17 16 35 35 H 1.08997 * 109.52437 * 302.98607 * 19 17 16 36 36 H 1.08990 * 109.47760 * 177.59469 * 20 19 17 37 37 H 1.09004 * 109.47551 * 297.62326 * 20 19 17 38 38 H 1.08996 * 109.48464 * 181.14407 * 22 21 20 39 39 H 1.09004 * 109.47528 * 301.16667 * 22 21 20 40 40 H 0.96697 * 114.00273 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 1 0.7880 -5.0073 -0.8415 13 7 0.7291 -5.1182 1.2556 14 6 2.4550 -6.1299 -0.1238 15 8 2.7872 -6.7531 0.8621 16 7 2.9574 -6.4592 -1.3303 17 6 3.9045 -7.5705 -1.4508 18 1 4.5435 -7.6023 -0.5683 19 6 3.1344 -8.8889 -1.5736 20 6 2.2985 -8.8651 -2.8560 21 8 3.1565 -8.6503 -3.9784 22 6 3.8668 -7.4109 -3.9414 23 6 4.7672 -7.3751 -2.7014 24 1 5.5045 -8.1755 -2.7639 25 8 5.4348 -6.1138 -2.6288 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6042 -0.8906 31 1 1.3492 -5.1022 2.0514 32 1 0.0244 -4.4001 1.3319 33 1 2.6887 -5.9632 -2.1194 34 1 3.8388 -9.7198 -1.6134 35 1 2.4770 -9.0084 -0.7125 36 1 1.7815 -9.8177 -2.9706 37 1 1.5671 -8.0590 -2.7981 38 1 4.4794 -7.3160 -4.8378 39 1 3.1558 -6.5858 -3.8979 40 1 6.0003 -5.9238 -3.3897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707009866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:57 Heat of formation + Delta-G solvation = -146.716085 kcal Electronic energy + Delta-G solvation = -21840.488080 eV Core-core repulsion = 18461.540351 eV Total energy + Delta-G solvation = -3378.947729 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60183 -38.92482 -36.76841 -35.55565 -34.65794 -32.84217 -31.53295 -30.12800 -29.85914 -26.64771 -25.21726 -23.77409 -23.66650 -21.11415 -20.03740 -19.55379 -17.72807 -17.57067 -16.53863 -16.41741 -16.26318 -16.07769 -15.28310 -14.74057 -14.48044 -14.44018 -14.14023 -13.64044 -13.48720 -13.13820 -12.88280 -12.70134 -12.58231 -12.15656 -12.14570 -11.73520 -11.54467 -11.07134 -10.92541 -10.72191 -10.66134 -10.64951 -9.97375 -9.89504 -9.66402 -9.26672 -9.18510 -8.98383 -8.43528 -8.17727 -6.07911 -4.10701 2.94625 3.21147 3.26658 3.34623 3.39008 3.40704 3.89934 4.34691 4.40169 4.40739 4.67302 4.77297 4.82713 4.99284 5.12278 5.20733 5.28487 5.30567 5.36652 5.52416 5.58910 5.62183 5.76520 5.80480 5.80806 6.32487 6.51657 6.56340 6.77229 6.90087 7.32303 7.43597 7.53032 7.62301 7.70826 7.89447 7.91583 8.32556 8.48142 8.95614 9.54257 11.03092 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.004238 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.053907 B = 6605.573148 C = 7179.175079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.136 4.136 11 C 0.075 3.925 12 H 0.094 0.906 13 N -0.831 5.831 14 C 0.529 3.471 15 O -0.539 6.539 16 N -0.722 5.722 17 C 0.152 3.848 18 H 0.096 0.904 19 C -0.164 4.164 20 C 0.057 3.943 21 O -0.376 6.376 22 C 0.028 3.972 23 C 0.065 3.935 24 H 0.076 0.924 25 O -0.549 6.549 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.345 0.655 32 H 0.354 0.646 33 H 0.400 0.600 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 -16.579 -8.300 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.176 4.176 11 C -0.040 4.040 12 H 0.112 0.888 13 N -0.363 5.363 14 C 0.316 3.684 15 O -0.415 6.415 16 N -0.375 5.375 17 C 0.047 3.953 18 H 0.115 0.885 19 C -0.203 4.203 20 C -0.019 4.019 21 O -0.295 6.295 22 C -0.050 4.050 23 C 0.005 3.995 24 H 0.094 0.906 25 O -0.354 6.354 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.159 0.841 32 H 0.169 0.831 33 H 0.235 0.765 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.448 -17.727 -7.427 20.272 hybrid contribution 1.016 2.358 -0.537 2.623 sum 7.464 -15.369 -7.965 18.850 Atomic orbital electron populations 1.69962 1.06018 1.26641 1.50675 1.25009 0.94859 0.99297 0.95155 0.86531 0.80142 0.83690 0.77637 1.19741 1.20959 1.20949 1.21227 0.93093 0.90878 1.50813 0.92646 1.19109 0.93719 0.91188 0.97290 1.22364 0.99809 0.93819 1.01633 1.21460 0.94626 0.92419 0.95496 0.88782 1.58753 1.18461 1.55845 1.03207 1.20886 0.81001 0.84187 0.82357 1.90624 1.60186 1.53616 1.37065 1.45935 1.46634 1.34772 1.10205 1.20871 0.90170 0.86328 0.97942 0.88550 1.22600 1.00779 0.97275 0.99656 1.22657 0.91976 1.02323 0.84973 1.87951 1.59660 1.37977 1.43913 1.23364 0.95615 0.87443 0.98530 1.22734 0.94234 0.87349 0.95223 0.90619 1.86668 1.64517 1.36420 1.47827 0.92964 0.96383 0.96435 0.92725 0.92397 0.84142 0.83089 0.76524 0.90018 0.89211 0.88362 0.92497 0.88356 0.92139 0.77246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 10 C -0.14 -2.75 4.78 -26.73 -0.13 -2.88 16 11 C 0.08 1.30 3.21 -68.86 -0.22 1.08 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.47 8.94 -5.65 -0.05 -14.53 16 14 C 0.53 8.84 7.04 -10.98 -0.08 8.76 16 15 O -0.54 -10.51 15.92 5.56 0.09 -10.43 16 16 N -0.72 -9.58 4.21 -53.62 -0.23 -9.81 16 17 C 0.15 1.78 2.52 -67.74 -0.17 1.61 16 18 H 0.10 1.34 7.59 -51.93 -0.39 0.95 16 19 C -0.16 -1.65 5.80 -26.59 -0.15 -1.80 16 20 C 0.06 0.53 6.68 37.21 0.25 0.78 16 21 O -0.38 -3.74 10.77 -35.23 -0.38 -4.12 16 22 C 0.03 0.24 6.31 37.30 0.24 0.47 16 23 C 0.06 0.60 3.40 -26.49 -0.09 0.51 16 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 25 O -0.55 -5.54 13.14 -35.23 -0.46 -6.01 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.44 6.87 -51.92 -0.36 0.09 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.35 6.14 8.58 -39.29 -0.34 5.80 16 32 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 33 H 0.40 4.81 7.07 -40.82 -0.29 4.52 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.55 7.75 -51.93 -0.40 0.15 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.53 6.72 -51.93 -0.35 0.18 16 40 H 0.38 2.06 9.09 45.56 0.41 2.48 16 LS Contribution 326.70 15.07 4.92 4.92 Total: -1.00 -33.07 326.70 -6.65 -39.72 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.36 Total: 13.55 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.90 Total: -4.25 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.46 Total: -49.76 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.75 Total: -20.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.07 -6.65 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707009866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.000 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds