Wall clock time and date at job start Mon Mar 30 2020 04:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99580 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47507 * 299.99950 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00324 * 3 2 1 7 7 C 1.37871 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00377 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47505 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47120 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47212 * 55.00262 * 11 10 9 13 13 N 1.46898 * 109.47205 * 294.99755 * 11 10 9 14 14 C 1.50706 * 109.47002 * 174.99524 * 11 10 9 15 15 O 1.21281 * 119.99699 * 99.99942 * 14 11 10 16 16 N 1.34773 * 120.00080 * 280.00433 * 14 11 10 17 17 C 1.46506 * 119.99969 * 180.02562 * 16 14 11 18 18 H 1.09003 * 109.54042 * 324.72289 * 17 16 14 19 19 C 1.53179 * 109.54541 * 84.89501 * 17 16 14 20 20 C 1.53100 * 109.16012 * 62.89044 * 19 17 16 21 21 O 1.42900 * 109.41416 * 57.60420 * 20 19 17 22 22 C 1.42903 * 114.10421 * 298.84356 * 21 20 19 23 23 C 1.53176 * 109.54107 * 204.54673 * 17 16 14 24 24 H 1.09004 * 109.51897 * 177.20745 * 23 17 16 25 25 O 1.42890 * 109.52733 * 57.01829 * 23 17 16 26 26 H 0.97002 * 120.00399 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47312 * 59.99527 * 9 7 2 28 28 H 1.09009 * 109.46877 * 300.00526 * 9 7 2 29 29 H 1.08992 * 109.47209 * 59.99690 * 10 9 7 30 30 H 1.09005 * 109.46612 * 299.99936 * 10 9 7 31 31 H 1.00902 * 110.99885 * 300.00050 * 13 11 10 32 32 H 1.00894 * 110.99573 * 63.95383 * 13 11 10 33 33 H 0.97005 * 120.00161 * 359.72088 * 16 14 11 34 34 H 1.08996 * 109.52188 * 182.79073 * 19 17 16 35 35 H 1.08997 * 109.52437 * 302.98607 * 19 17 16 36 36 H 1.08990 * 109.47760 * 177.59469 * 20 19 17 37 37 H 1.09004 * 109.47551 * 297.62326 * 20 19 17 38 38 H 1.08996 * 109.48464 * 181.14407 * 22 21 20 39 39 H 1.09004 * 109.47528 * 301.16667 * 22 21 20 40 40 H 0.96697 * 114.00273 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 0.0001 12 1 0.7880 -5.0073 -0.8415 13 7 0.7291 -5.1182 1.2556 14 6 2.4550 -6.1299 -0.1238 15 8 2.7872 -6.7531 0.8621 16 7 2.9574 -6.4592 -1.3303 17 6 3.9045 -7.5705 -1.4508 18 1 4.5435 -7.6023 -0.5683 19 6 3.1344 -8.8889 -1.5736 20 6 2.2985 -8.8651 -2.8560 21 8 3.1565 -8.6503 -3.9784 22 6 3.8668 -7.4109 -3.9414 23 6 4.7672 -7.3751 -2.7014 24 1 5.5045 -8.1755 -2.7639 25 8 5.4348 -6.1138 -2.6288 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 0.6247 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8894 30 1 2.8720 -3.6042 -0.8906 31 1 1.3492 -5.1022 2.0514 32 1 0.0244 -4.4001 1.3319 33 1 2.6887 -5.9632 -2.1194 34 1 3.8388 -9.7198 -1.6134 35 1 2.4770 -9.0084 -0.7125 36 1 1.7815 -9.8177 -2.9706 37 1 1.5671 -8.0590 -2.7981 38 1 4.4794 -7.3160 -4.8378 39 1 3.1558 -6.5858 -3.8979 40 1 6.0003 -5.9238 -3.3897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707009866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:57 Heat of formation + Delta-G solvation = -175.215732 kcal Electronic energy + Delta-G solvation = -21841.723917 eV Core-core repulsion = 18461.540351 eV Total energy + Delta-G solvation = -3380.183567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.60244 -40.05576 -37.51970 -37.11110 -35.76065 -34.84667 -32.50742 -31.69682 -30.88696 -28.22739 -26.36670 -25.30158 -24.42354 -22.67092 -21.43171 -20.60285 -19.02576 -18.46301 -18.19621 -17.38604 -17.21190 -17.10237 -16.52408 -16.21846 -15.94809 -15.76297 -15.43831 -14.95196 -14.67719 -14.37122 -14.07432 -14.01686 -13.67101 -13.47109 -13.35769 -12.97842 -12.93156 -12.69767 -12.51394 -12.35638 -11.83281 -11.73257 -11.45276 -11.39377 -11.29653 -10.74688 -10.57299 -10.44142 -10.10165 -9.66270 -8.22343 -6.32699 1.38170 1.39680 1.51673 1.59691 2.06947 2.39605 2.72075 3.11332 3.17652 3.59387 3.66203 3.75091 3.77811 3.88756 4.07002 4.10529 4.11633 4.23384 4.31995 4.63925 4.64640 4.67309 4.71974 4.79658 4.83167 4.98043 5.00707 5.06806 5.43375 5.45683 5.63928 5.79546 6.04225 6.08113 6.20699 6.45318 6.47515 6.82448 6.82617 7.20332 7.36560 8.88678 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.004238 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.053907 B = 6605.573148 C = 7179.175079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.119 4.119 11 C 0.081 3.919 12 H 0.108 0.892 13 N -0.828 5.828 14 C 0.529 3.471 15 O -0.570 6.570 16 N -0.707 5.707 17 C 0.144 3.856 18 H 0.072 0.928 19 C -0.157 4.157 20 C 0.059 3.941 21 O -0.383 6.383 22 C 0.028 3.972 23 C 0.073 3.927 24 H 0.094 0.906 25 O -0.572 6.572 26 H 0.264 0.736 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.343 0.657 32 H 0.353 0.647 33 H 0.407 0.593 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.050 0.950 38 H 0.124 0.876 39 H 0.056 0.944 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -16.880 -9.702 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.126 0.874 13 N -0.359 5.359 14 C 0.316 3.684 15 O -0.449 6.449 16 N -0.359 5.359 17 C 0.039 3.961 18 H 0.090 0.910 19 C -0.196 4.196 20 C -0.018 4.018 21 O -0.302 6.302 22 C -0.049 4.049 23 C 0.013 3.987 24 H 0.112 0.888 25 O -0.381 6.381 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.244 0.756 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.142 0.858 39 H 0.074 0.926 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.498 -18.037 -8.879 21.457 hybrid contribution 0.711 2.438 -0.123 2.542 sum 8.209 -15.600 -9.002 19.793 Atomic orbital electron populations 1.70066 1.07467 1.27730 1.51386 1.25850 0.95727 1.02933 0.94674 0.85484 0.78971 0.79241 0.77872 1.19107 1.20136 1.20479 1.21633 0.93283 0.92500 1.50856 0.92915 1.18968 0.93971 0.91962 0.95747 1.22103 0.98720 0.93880 1.01163 1.21395 0.94733 0.91323 0.95950 0.87426 1.58768 1.18326 1.55577 1.03252 1.20684 0.80857 0.83879 0.82965 1.90611 1.61256 1.54717 1.38278 1.45835 1.45927 1.34864 1.09313 1.21079 0.90075 0.86476 0.98503 0.91020 1.22525 1.00763 0.96796 0.99469 1.22685 0.91650 1.03036 0.84385 1.87951 1.59752 1.38605 1.43907 1.23469 0.95538 0.86773 0.99115 1.22668 0.94306 0.87700 0.93979 0.88849 1.86616 1.65174 1.36776 1.49511 0.92694 0.97905 0.97862 0.94013 0.91919 0.84373 0.83251 0.75605 0.88313 0.90984 0.86696 0.93174 0.85778 0.92619 0.74898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.08 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.53 4.74 29.85 0.14 1.67 16 10 C -0.12 -4.79 4.78 30.59 0.15 -4.65 16 11 C 0.08 2.79 3.21 44.17 0.14 2.94 16 12 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 13 N -0.83 -29.03 8.94 -171.80 -1.54 -30.56 16 14 C 0.53 17.60 7.04 87.66 0.62 18.22 16 15 O -0.57 -22.41 15.92 -3.03 -0.05 -22.45 16 16 N -0.71 -18.24 4.21 -441.95 -1.86 -20.10 16 17 C 0.14 3.23 2.52 45.11 0.11 3.34 16 18 H 0.07 1.99 7.59 -2.39 -0.02 1.97 16 19 C -0.16 -2.95 5.80 30.69 0.18 -2.77 16 20 C 0.06 0.98 6.68 72.02 0.48 1.46 16 21 O -0.38 -6.64 10.77 -148.98 -1.60 -8.25 16 22 C 0.03 0.40 6.31 72.08 0.45 0.86 16 23 C 0.07 1.20 3.40 30.75 0.10 1.30 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 O -0.57 -10.44 13.14 -148.98 -1.96 -12.40 16 26 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.00 0.16 6.87 -2.38 -0.02 0.15 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 31 H 0.34 12.37 8.58 -89.69 -0.77 11.60 16 32 H 0.35 12.48 7.55 -89.70 -0.68 11.80 16 33 H 0.41 9.31 7.07 -92.70 -0.66 8.65 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 0.90 7.75 -2.39 -0.02 0.88 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 0.85 6.72 -2.39 -0.02 0.84 16 40 H 0.40 3.37 9.09 -74.06 -0.67 2.70 16 Total: -1.00 -70.15 326.70 -3.31 -73.46 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -1.69 Total: 35.73 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 3.07 Total: -6.89 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -3.11 Total: -104.85 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -3.61 Total: -43.10 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -70.15 -3.31 -73.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707009866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.752 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds