Wall clock time and date at job start Mon Mar 30 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00199 * 2 1 3 5 5 N 1.46501 * 109.47247 * 65.00108 * 4 2 1 6 6 C 1.46501 * 120.00084 * 270.00502 * 5 4 2 7 7 C 1.50706 * 109.46725 * 269.99744 * 6 5 4 8 8 H 1.08001 * 120.00085 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99608 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99680 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00304 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47261 * 90.00128 * 11 9 7 13 13 H 1.48505 * 109.47077 * 209.99623 * 11 9 7 14 14 H 1.48498 * 109.47356 * 329.99783 * 11 9 7 15 15 C 1.34780 * 120.00083 * 89.99777 * 5 4 2 16 16 O 1.21282 * 119.99800 * 180.02562 * 15 5 4 17 17 C 1.50695 * 119.99978 * 0.02562 * 15 5 4 18 18 H 1.09001 * 110.45876 * 317.58149 * 17 15 5 19 19 C 1.54377 * 110.41311 * 80.00122 * 17 15 5 20 20 C 1.54257 * 105.06382 * 142.63362 * 19 17 15 21 21 H 1.09002 * 110.32715 * 118.89422 * 20 19 17 22 22 F 1.39895 * 110.32005 * 240.99989 * 20 19 17 23 23 C 1.54381 * 105.14978 * 359.94367 * 20 19 17 24 24 N 1.48567 * 110.41156 * 195.17126 * 17 15 5 25 25 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47790 * 299.99828 * 1 2 3 27 27 H 1.09006 * 109.47212 * 59.99972 * 1 2 3 28 28 H 1.09009 * 109.47426 * 239.99858 * 2 1 3 29 29 H 1.08994 * 109.47545 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47118 * 300.00442 * 3 2 1 31 31 H 1.09008 * 109.46744 * 60.00070 * 3 2 1 32 32 H 1.09000 * 109.47564 * 305.00405 * 4 2 1 33 33 H 1.09001 * 109.47377 * 184.99899 * 4 2 1 34 34 H 1.08998 * 109.47284 * 29.98994 * 6 5 4 35 35 H 1.08997 * 109.47458 * 149.99565 * 6 5 4 36 36 H 0.97001 * 119.99856 * 179.97438 * 10 9 7 37 37 H 1.08995 * 110.32829 * 23.72997 * 19 17 15 38 38 H 1.09009 * 110.32090 * 261.52715 * 19 17 15 39 39 H 1.09004 * 110.40867 * 94.98012 * 23 20 19 40 40 H 1.08996 * 110.41187 * 217.42234 * 23 20 19 41 41 H 1.00902 * 110.99892 * 82.18148 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3744 -2.5660 1.7611 7 6 0.5715 -2.9410 3.2074 8 1 1.5507 -2.8647 3.6564 9 6 -0.4985 -3.3814 3.9572 10 7 -0.3264 -3.7091 5.2193 11 14 -2.1920 -3.5140 3.1803 12 1 -2.3636 -4.8681 2.5953 13 1 -3.2312 -3.2873 4.2167 14 1 -2.3277 -2.4922 2.1114 15 6 2.4714 -3.0331 0.6114 16 8 2.1504 -4.2016 0.5624 17 6 3.7862 -2.5877 0.0249 18 1 3.6614 -1.6549 -0.5252 19 6 4.8428 -2.4194 1.1377 20 6 6.1641 -2.9140 0.5140 21 1 6.8980 -2.1083 0.4935 22 9 6.6622 -4.0056 1.2333 23 6 5.7967 -3.3415 -0.9232 24 7 4.3415 -3.6421 -0.8622 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6053 -0.2619 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 -0.3485 -1.7533 1.6918 35 1 0.0041 -3.4298 1.2090 36 1 -1.0792 -4.0186 5.7469 37 1 4.5814 -3.0282 2.0032 38 1 4.9281 -1.3709 1.4233 39 1 5.9874 -2.5272 -1.6224 40 1 6.3585 -4.2301 -1.2108 41 1 3.9244 -3.5991 -1.7800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707427157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:32 Heat of formation + Delta-G solvation = -83.407561 kcal Electronic energy + Delta-G solvation = -22401.395512 eV Core-core repulsion = 19037.565836 eV Total energy + Delta-G solvation = -3363.829676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.54612 -39.75208 -37.31781 -36.28965 -33.58861 -32.30368 -30.25658 -29.54047 -27.87954 -27.01192 -25.59765 -23.39595 -21.44112 -21.14875 -20.25231 -18.46309 -17.49249 -16.91256 -16.60553 -16.09208 -15.24713 -15.01652 -14.60334 -14.44908 -14.35084 -13.82127 -13.66166 -13.29796 -13.20653 -12.71071 -12.52528 -12.22964 -12.17253 -12.00109 -11.80289 -11.60932 -11.50157 -11.15857 -11.03087 -11.00999 -10.84864 -10.63112 -10.57781 -10.35297 -10.08404 -9.49918 -9.06234 -8.55878 -8.49267 -7.66353 -6.06125 -4.04290 3.28757 3.29993 3.35384 3.37935 3.57367 4.20519 4.33301 4.40564 4.41477 4.60711 4.79684 4.92056 4.98936 5.02387 5.11663 5.23696 5.25128 5.32620 5.41203 5.54261 5.62615 5.69990 5.75025 5.81509 5.97179 6.01276 6.05713 6.12347 6.16653 6.38778 6.48111 6.52004 6.77525 6.97018 7.16037 7.38789 7.64639 8.28187 8.49970 8.96710 9.05038 9.54366 11.07412 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.006658 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.057545 B = 4204.719296 C = 5217.597913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.113 3.887 5 N -0.592 5.592 6 C 0.215 3.785 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.897 5.897 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.515 3.485 16 O -0.514 6.514 17 C 0.049 3.951 18 H 0.070 0.930 19 C -0.142 4.142 20 C 0.090 3.910 21 H 0.093 0.907 22 F -0.202 7.202 23 C 0.012 3.988 24 N -0.636 5.636 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.741 10.856 -13.525 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.012 4.012 5 N -0.324 5.324 6 C 0.094 3.906 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.300 3.700 16 O -0.388 6.388 17 C -0.064 4.064 18 H 0.088 0.912 19 C -0.180 4.180 20 C 0.054 3.946 21 H 0.110 0.890 22 F -0.183 7.183 23 C -0.118 4.118 24 N -0.266 5.266 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.470 9.540 -12.866 18.607 hybrid contribution -0.874 0.738 -0.739 1.362 sum 8.596 10.277 -13.606 19.095 Atomic orbital electron populations 1.21940 0.94808 1.02775 1.01217 1.21612 0.97034 0.95964 0.98834 1.21781 1.00554 0.95872 1.01949 1.21619 0.99316 0.82198 0.98028 1.47868 1.21099 1.06404 1.56995 1.19749 0.80541 0.95675 0.94612 1.21350 0.97389 1.44463 0.93382 0.90787 1.24851 0.98812 0.94625 0.94704 1.69902 1.31561 1.44802 1.07344 0.86887 0.84415 0.79329 0.79284 1.19923 1.21095 1.19063 1.19903 0.84566 0.86177 0.79349 1.90691 1.73974 1.17116 1.57013 1.22499 0.94647 0.94018 0.95243 0.91180 1.22949 0.92550 1.03097 0.99409 1.22243 0.95589 0.86223 0.90576 0.88961 1.92859 1.88843 1.57079 1.79533 1.23583 0.91170 1.01494 0.95546 1.63372 1.01759 1.46082 1.15395 0.91634 0.92350 0.93423 0.91743 0.92901 0.92786 0.92291 0.89606 0.91498 0.94612 0.94838 0.92611 0.88326 0.89180 0.92566 0.88523 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.18 37.15 0.30 -1.74 16 2 C -0.11 -1.41 2.96 -90.62 -0.27 -1.68 16 3 C -0.14 -1.36 9.19 37.16 0.34 -1.01 16 4 C 0.11 1.69 4.53 -4.04 -0.02 1.68 16 5 N -0.59 -11.81 2.28 -175.06 -0.40 -12.21 16 6 C 0.21 5.18 3.30 -5.19 -0.02 5.16 16 7 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 8 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 11 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 15 C 0.52 10.52 6.86 -10.99 -0.08 10.45 16 16 O -0.51 -13.13 16.14 5.56 0.09 -13.04 16 17 C 0.05 0.72 2.60 -67.22 -0.17 0.55 16 18 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 19 C -0.14 -1.93 5.78 -25.35 -0.15 -2.08 16 20 C 0.09 1.06 4.84 -25.35 -0.12 0.94 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 F -0.20 -3.11 17.10 2.25 0.04 -3.07 16 23 C 0.01 0.13 7.28 -2.09 -0.02 0.11 16 24 N -0.64 -9.09 6.86 -103.82 -0.71 -9.80 16 25 H 0.06 1.06 5.89 -51.93 -0.31 0.75 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.77 7.28 -51.92 -0.38 0.39 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.07 0.85 5.11 -51.93 -0.27 0.58 16 34 H 0.04 0.82 5.04 -51.93 -0.26 0.55 16 35 H 0.03 0.88 6.85 -51.93 -0.36 0.52 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.10 1.73 7.75 -51.93 -0.40 1.33 16 38 H 0.09 0.95 7.01 -51.92 -0.36 0.58 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 41 H 0.34 4.21 8.92 -39.29 -0.35 3.86 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -35.31 325.30 -7.02 -42.32 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.41 Total: 2.10 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.63 Total: -1.10 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.34 Total: -49.14 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.31 -7.02 -42.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707427157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.085 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds