Wall clock time and date at job start Mon Mar 30 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 C 1.52998 * 109.47057 * 120.00199 * 2 1 3 5 5 N 1.46501 * 109.47247 * 65.00108 * 4 2 1 6 6 C 1.46501 * 120.00084 * 270.00502 * 5 4 2 7 7 C 1.50706 * 109.46725 * 269.99744 * 6 5 4 8 8 H 1.08001 * 120.00085 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99608 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99680 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00304 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47261 * 90.00128 * 11 9 7 13 13 H 1.48505 * 109.47077 * 209.99623 * 11 9 7 14 14 H 1.48498 * 109.47356 * 329.99783 * 11 9 7 15 15 C 1.34780 * 120.00083 * 89.99777 * 5 4 2 16 16 O 1.21282 * 119.99800 * 180.02562 * 15 5 4 17 17 C 1.50695 * 119.99978 * 0.02562 * 15 5 4 18 18 H 1.09001 * 110.45876 * 317.58149 * 17 15 5 19 19 C 1.54377 * 110.41311 * 80.00122 * 17 15 5 20 20 C 1.54257 * 105.06382 * 142.63362 * 19 17 15 21 21 H 1.09002 * 110.32715 * 118.89422 * 20 19 17 22 22 F 1.39895 * 110.32005 * 240.99989 * 20 19 17 23 23 C 1.54381 * 105.14978 * 359.94367 * 20 19 17 24 24 N 1.48567 * 110.41156 * 195.17126 * 17 15 5 25 25 H 1.09004 * 109.47364 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47790 * 299.99828 * 1 2 3 27 27 H 1.09006 * 109.47212 * 59.99972 * 1 2 3 28 28 H 1.09009 * 109.47426 * 239.99858 * 2 1 3 29 29 H 1.08994 * 109.47545 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47118 * 300.00442 * 3 2 1 31 31 H 1.09008 * 109.46744 * 60.00070 * 3 2 1 32 32 H 1.09000 * 109.47564 * 305.00405 * 4 2 1 33 33 H 1.09001 * 109.47377 * 184.99899 * 4 2 1 34 34 H 1.08998 * 109.47284 * 29.98994 * 6 5 4 35 35 H 1.08997 * 109.47458 * 149.99565 * 6 5 4 36 36 H 0.97001 * 119.99856 * 179.97438 * 10 9 7 37 37 H 1.08995 * 110.32829 * 23.72997 * 19 17 15 38 38 H 1.09009 * 110.32090 * 261.52715 * 19 17 15 39 39 H 1.09004 * 110.40867 * 94.98012 * 23 20 19 40 40 H 1.08996 * 110.41187 * 217.42234 * 23 20 19 41 41 H 1.00902 * 110.99892 * 82.18148 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3744 -2.5660 1.7611 7 6 0.5715 -2.9410 3.2074 8 1 1.5507 -2.8647 3.6564 9 6 -0.4985 -3.3814 3.9572 10 7 -0.3264 -3.7091 5.2193 11 14 -2.1920 -3.5140 3.1803 12 1 -2.3636 -4.8681 2.5953 13 1 -3.2312 -3.2873 4.2167 14 1 -2.3277 -2.4922 2.1114 15 6 2.4714 -3.0331 0.6114 16 8 2.1504 -4.2016 0.5624 17 6 3.7862 -2.5877 0.0249 18 1 3.6614 -1.6549 -0.5252 19 6 4.8428 -2.4194 1.1377 20 6 6.1641 -2.9140 0.5140 21 1 6.8980 -2.1083 0.4935 22 9 6.6622 -4.0056 1.2333 23 6 5.7967 -3.3415 -0.9232 24 7 4.3415 -3.6421 -0.8622 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6053 -0.2619 2.1370 33 1 3.1262 -0.6444 1.2952 34 1 -0.3485 -1.7533 1.6918 35 1 0.0041 -3.4298 1.2090 36 1 -1.0792 -4.0186 5.7469 37 1 4.5814 -3.0282 2.0032 38 1 4.9281 -1.3709 1.4233 39 1 5.9874 -2.5272 -1.6224 40 1 6.3585 -4.2301 -1.2108 41 1 3.9244 -3.5991 -1.7800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707427157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:31 Heat of formation + Delta-G solvation = -110.320094 kcal Electronic energy + Delta-G solvation = -22402.562527 eV Core-core repulsion = 19037.565836 eV Total energy + Delta-G solvation = -3364.996691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.60265 -41.19045 -38.46706 -37.68903 -35.32026 -34.18685 -31.53060 -30.80414 -29.39041 -27.96739 -26.92298 -25.04219 -22.95778 -22.11933 -21.30407 -19.91274 -19.14032 -18.50915 -17.90715 -17.43441 -16.68161 -16.38046 -15.94075 -15.66011 -15.58646 -15.28527 -14.84467 -14.63409 -14.60814 -14.25100 -13.79967 -13.61479 -13.45279 -13.21992 -13.00426 -12.97147 -12.71452 -12.63141 -12.49962 -12.13367 -12.09167 -11.97516 -11.81483 -11.76192 -11.57202 -11.52617 -10.83683 -10.60596 -9.55042 -9.34268 -8.35598 -6.39836 1.28281 1.33366 1.41044 1.76513 2.17671 2.28396 2.98669 3.17534 3.30472 3.43477 3.65491 3.78786 3.89129 4.00715 4.03121 4.15094 4.24699 4.31119 4.51956 4.63964 4.66419 4.72070 4.74031 4.88208 4.89809 4.90738 4.97072 5.03839 5.08211 5.13001 5.29026 5.43695 5.44715 5.52065 5.59636 5.71487 6.23346 6.27278 6.61475 6.74317 7.20900 7.47428 8.81671 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.015959 B = 0.006658 C = 0.005365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.057545 B = 4204.719296 C = 5217.597913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.105 3.895 5 N -0.595 5.595 6 C 0.227 3.773 7 C -0.535 4.535 8 H 0.027 0.973 9 C 0.011 3.989 10 N -0.946 5.946 11 Si 0.944 3.056 12 H -0.279 1.279 13 H -0.272 1.272 14 H -0.236 1.236 15 C 0.502 3.498 16 O -0.581 6.581 17 C 0.064 3.936 18 H 0.115 0.885 19 C -0.144 4.144 20 C 0.083 3.917 21 H 0.144 0.856 22 F -0.230 7.230 23 C 0.018 3.982 24 N -0.673 5.673 25 H 0.033 0.967 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.010 0.990 36 H 0.268 0.732 37 H 0.045 0.955 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.547 13.891 -16.321 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.017 4.017 5 N -0.326 5.326 6 C 0.105 3.895 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.187 4.187 10 N -0.586 5.586 11 Si 0.766 3.234 12 H -0.205 1.205 13 H -0.197 1.197 14 H -0.159 1.159 15 C 0.290 3.710 16 O -0.460 6.460 17 C -0.049 4.049 18 H 0.133 0.867 19 C -0.183 4.183 20 C 0.047 3.953 21 H 0.161 0.839 22 F -0.211 7.211 23 C -0.111 4.111 24 N -0.305 5.305 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.310 12.641 -15.683 22.628 hybrid contribution -1.049 -0.226 0.191 1.090 sum 9.261 12.415 -15.492 21.907 Atomic orbital electron populations 1.21961 0.96055 1.00925 1.02166 1.21551 0.95990 0.97753 0.97252 1.21745 1.01926 0.93269 1.02592 1.21971 1.01185 0.79300 0.99260 1.47948 1.19749 1.08744 1.56126 1.19361 0.83390 0.95411 0.91355 1.21615 0.95444 1.44474 0.95846 0.95512 1.25842 1.03690 0.94066 0.95127 1.70058 1.33209 1.46180 1.09141 0.85778 0.78638 0.79698 0.79261 1.20477 1.19719 1.15927 1.21103 0.86183 0.85303 0.78403 1.90643 1.75724 1.19938 1.59706 1.22405 0.91120 0.95574 0.95842 0.86750 1.23017 0.93545 1.04472 0.97264 1.22704 0.95542 0.86634 0.90410 0.83903 1.92808 1.89101 1.58801 1.80391 1.23684 0.88509 1.03186 0.95723 1.63249 1.04111 1.47050 1.16092 0.94765 0.92887 0.91062 0.90662 0.90731 0.91254 0.92602 0.91167 0.88581 0.92588 0.97234 0.92315 0.93624 0.85402 0.87832 0.88760 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.18 71.98 0.59 -3.25 16 2 C -0.11 -2.25 2.96 -10.80 -0.03 -2.28 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 4 C 0.11 2.99 4.53 86.38 0.39 3.38 16 5 N -0.59 -24.04 2.28 -826.15 -1.88 -25.93 16 6 C 0.23 11.28 3.30 85.63 0.28 11.56 16 7 C -0.54 -32.37 9.94 25.60 0.25 -32.12 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 9 C 0.01 0.64 5.47 84.65 0.46 1.10 16 10 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 11 Si 0.94 45.65 27.47 68.60 1.88 47.53 16 12 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 13 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 15 C 0.50 20.91 6.86 87.65 0.60 21.52 16 16 O -0.58 -31.30 16.14 -3.04 -0.05 -31.35 16 17 C 0.06 1.75 2.60 44.31 0.12 1.86 16 18 H 0.12 2.13 6.40 -2.39 -0.02 2.11 16 19 C -0.14 -3.70 5.78 31.49 0.18 -3.52 16 20 C 0.08 1.71 4.84 31.49 0.15 1.86 16 21 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 22 F -0.23 -6.95 17.10 44.97 0.77 -6.18 16 23 C 0.02 0.32 7.28 86.42 0.63 0.95 16 24 N -0.67 -18.14 6.86 -482.39 -3.31 -21.45 16 25 H 0.03 1.05 5.89 -2.38 -0.01 1.04 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.08 1.48 7.28 -2.38 -0.02 1.46 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 33 H 0.10 2.13 5.11 -2.39 -0.01 2.12 16 34 H 0.06 2.55 5.04 -2.39 -0.01 2.54 16 35 H 0.01 0.52 6.85 -2.39 -0.02 0.51 16 36 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 37 H 0.04 1.67 7.75 -2.39 -0.02 1.65 16 38 H 0.13 2.20 7.01 -2.38 -0.02 2.19 16 39 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.09 1.76 8.12 -2.39 -0.02 1.74 16 41 H 0.35 7.97 8.92 -89.69 -0.80 7.17 16 Total: -1.00 -85.69 325.30 2.17 -83.51 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.17 Total: 15.08 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.29 Total: -0.23 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.89 Total: -108.37 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.05 Total: -31.35 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 0.77 Total: -6.18 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -85.69 2.17 -83.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707427157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.807 kcal (2) G-P(sol) polarization free energy of solvation -85.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds