Wall clock time and date at job start Mon Mar 30 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47018 * 120.00296 * 2 1 3 5 5 N 1.46504 * 109.47029 * 174.19392 * 4 2 1 6 6 C 1.46504 * 119.99390 * 276.40028 * 5 4 2 7 7 C 1.50704 * 109.46991 * 269.99936 * 6 5 4 8 8 H 1.07998 * 119.99753 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99908 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00219 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46733 * 90.00361 * 11 9 7 13 13 H 1.48501 * 109.47093 * 210.00148 * 11 9 7 14 14 H 1.48494 * 109.46901 * 330.00537 * 11 9 7 15 15 C 1.34773 * 120.00279 * 96.39970 * 5 4 2 16 16 O 1.21285 * 119.99983 * 185.28591 * 15 5 4 17 17 C 1.50705 * 119.99938 * 5.28754 * 15 5 4 18 18 H 1.08994 * 110.42180 * 326.93569 * 17 15 5 19 19 C 1.54904 * 110.37385 * 89.25281 * 17 15 5 20 20 C 1.55134 * 101.65593 * 155.90061 * 19 17 15 21 21 H 1.08997 * 110.70807 * 205.96555 * 20 19 17 22 22 F 1.39900 * 110.71018 * 82.72620 * 20 19 17 23 23 C 1.54323 * 103.01716 * 324.34488 * 20 19 17 24 24 N 1.47438 * 107.23188 * 22.28198 * 23 20 19 25 25 H 1.08995 * 109.47305 * 300.00146 * 1 2 3 26 26 H 1.09004 * 109.47209 * 59.99936 * 1 2 3 27 27 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47252 * 239.99690 * 2 1 3 29 29 H 1.09008 * 109.47374 * 55.70569 * 3 2 1 30 30 H 1.08999 * 109.47413 * 175.70383 * 3 2 1 31 31 H 1.09004 * 109.47371 * 295.70560 * 3 2 1 32 32 H 1.08990 * 109.47283 * 54.18730 * 4 2 1 33 33 H 1.09005 * 109.46701 * 294.18510 * 4 2 1 34 34 H 1.08991 * 109.47206 * 30.00145 * 6 5 4 35 35 H 1.08998 * 109.46706 * 150.00360 * 6 5 4 36 36 H 0.96996 * 120.00259 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.99288 * 37.80234 * 19 17 15 38 38 H 1.09006 * 111.02151 * 274.00484 * 19 17 15 39 39 H 1.09007 * 109.88564 * 262.87752 * 23 20 19 40 40 H 1.09000 * 109.88790 * 141.69083 * 23 20 19 41 41 H 1.00899 * 110.99847 * 123.26153 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4983 -0.8435 1.1814 6 6 4.1069 -1.9457 0.4322 7 6 4.3027 -3.1271 1.3471 8 1 4.0041 -3.0632 2.3830 9 6 4.8640 -4.2891 0.8618 10 7 5.0344 -5.3204 1.6601 11 14 5.3810 -4.3994 -0.9298 12 1 6.7914 -3.9550 -1.0662 13 1 5.2575 -5.8042 -1.3951 14 1 4.5053 -3.5267 -1.7523 15 6 4.2800 0.0579 1.8081 16 8 5.4845 0.0136 1.6736 17 6 3.6573 1.1209 2.6762 18 1 2.6859 1.4153 2.2791 19 6 3.5133 0.6122 4.1322 20 6 3.4847 1.9435 4.9280 21 1 3.8385 1.7908 5.9476 22 9 2.1982 2.4933 4.9265 23 6 4.4623 2.8406 4.1399 24 7 4.5509 2.2948 2.7731 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6151 1.9781 0.8491 30 1 3.1272 1.4434 0.0770 31 1 1.7408 1.9336 -0.9260 32 1 1.5942 -1.7145 1.3028 33 1 1.7641 -0.1509 2.1362 34 1 3.4530 -2.2291 -0.3924 35 1 5.0719 -1.6276 0.0379 36 1 5.4289 -6.1381 1.3186 37 1 4.3706 0.0036 4.4198 38 1 2.5830 0.0591 4.2629 39 1 5.4450 2.8216 4.6112 40 1 4.0840 3.8623 4.1075 41 1 4.3053 2.9937 2.0881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707427161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:39 Heat of formation + Delta-G solvation = -84.326758 kcal Electronic energy + Delta-G solvation = -22526.986628 eV Core-core repulsion = 19163.117092 eV Total energy + Delta-G solvation = -3363.869535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.79351 -39.76109 -37.23653 -36.23374 -33.67421 -32.27037 -30.14743 -29.62982 -27.85580 -27.10385 -25.63915 -23.35896 -21.34215 -21.27547 -20.27824 -18.31333 -17.41328 -16.91044 -16.71337 -16.09731 -15.25969 -15.07685 -14.96906 -14.56195 -14.32556 -13.90091 -13.51525 -13.26670 -12.97322 -12.86684 -12.58958 -12.25805 -12.18745 -12.01575 -11.76443 -11.60283 -11.49798 -11.22713 -11.05228 -10.98491 -10.86147 -10.75431 -10.48199 -10.43725 -10.10707 -9.52314 -9.11402 -8.57879 -8.28621 -7.64318 -6.08201 -4.06661 3.27388 3.30293 3.36005 3.38420 3.62170 4.16724 4.29306 4.32862 4.40749 4.69607 4.79098 4.95408 5.03001 5.03928 5.17919 5.25153 5.25762 5.33171 5.50604 5.57459 5.63980 5.67222 5.76088 5.86736 5.86808 5.99992 6.08330 6.12166 6.20333 6.35943 6.45009 6.59756 6.78255 6.99934 7.22546 7.40615 7.62896 8.30987 8.48468 8.94091 9.07275 9.52821 11.05141 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.006354 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.168096 B = 4405.518568 C = 5143.002395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.113 3.887 5 N -0.593 5.593 6 C 0.217 3.783 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.073 3.927 10 N -0.898 5.898 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.520 3.480 16 O -0.518 6.518 17 C 0.050 3.950 18 H 0.080 0.920 19 C -0.139 4.139 20 C 0.064 3.936 21 H 0.102 0.898 22 F -0.210 7.210 23 C 0.029 3.971 24 N -0.656 5.656 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 15.624 1.933 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.206 4.206 4 C -0.011 4.011 5 N -0.325 5.325 6 C 0.097 3.903 7 C -0.567 4.567 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.305 3.695 16 O -0.393 6.393 17 C -0.063 4.063 18 H 0.098 0.902 19 C -0.178 4.178 20 C 0.027 3.973 21 H 0.120 0.880 22 F -0.191 7.191 23 C -0.101 4.101 24 N -0.287 5.287 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.445 15.041 1.958 16.896 hybrid contribution -0.719 0.166 -0.891 1.157 sum -8.164 15.206 1.067 17.292 Atomic orbital electron populations 1.21761 0.94826 1.01990 1.01479 1.21574 0.95615 0.96482 1.00085 1.21947 1.01457 0.96093 1.01122 1.21592 0.81552 1.01357 0.96608 1.47877 1.05280 1.27548 1.51827 1.19617 0.94061 0.84676 0.91991 1.21339 1.41395 0.95784 0.98142 0.90782 1.24846 0.94987 0.95501 0.97630 1.69895 1.44500 1.03768 1.35497 0.86863 0.79948 0.77359 0.85614 1.19899 1.21109 1.19068 1.19906 0.87217 0.81955 0.80390 1.90659 1.14278 1.72795 1.61553 1.22609 0.95302 0.92021 0.96331 0.90211 1.23242 1.05243 0.96594 0.92712 1.22871 0.78974 0.93796 1.01708 0.88018 1.92815 1.41266 1.87024 1.98011 1.23242 0.99783 0.97160 0.89872 1.61351 1.55045 1.08269 1.04000 0.92789 0.92782 0.92300 0.90514 0.93023 0.92436 0.92807 0.89844 0.91365 0.95345 0.94545 0.92594 0.87875 0.88879 0.88729 0.91568 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.12 -1.57 3.11 -90.62 -0.28 -1.85 16 3 C -0.15 -1.82 7.83 37.15 0.29 -1.53 16 4 C 0.11 1.79 4.86 -4.04 -0.02 1.77 16 5 N -0.59 -12.06 2.25 -175.05 -0.39 -12.45 16 6 C 0.22 5.30 4.29 -5.19 -0.02 5.28 16 7 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 11 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 15 C 0.52 10.63 5.54 -10.98 -0.06 10.57 16 16 O -0.52 -13.02 16.21 5.55 0.09 -12.93 16 17 C 0.05 0.76 2.23 -67.34 -0.15 0.61 16 18 H 0.08 1.08 3.96 -51.93 -0.21 0.87 16 19 C -0.14 -1.94 6.17 -24.60 -0.15 -2.10 16 20 C 0.06 0.71 4.75 -24.91 -0.12 0.59 16 21 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 22 F -0.21 -2.58 17.19 2.25 0.04 -2.54 16 23 C 0.03 0.32 7.40 -2.84 -0.02 0.30 16 24 N -0.66 -9.23 6.69 -105.05 -0.70 -9.93 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 29 H 0.05 0.56 6.94 -51.92 -0.36 0.20 16 30 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 33 H 0.07 0.94 5.59 -51.93 -0.29 0.65 16 34 H 0.03 0.67 7.02 -51.93 -0.36 0.30 16 35 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.10 1.62 8.05 -51.93 -0.42 1.21 16 38 H 0.09 1.22 7.81 -51.93 -0.41 0.81 16 39 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 41 H 0.34 4.16 8.91 -39.29 -0.35 3.81 16 LS Contribution 326.03 15.07 4.91 4.91 Total: -1.00 -33.88 326.03 -7.04 -40.92 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.45 Total: 2.78 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.63 Total: -0.93 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.32 Total: -49.24 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.88 -7.04 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707427161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.411 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds