Wall clock time and date at job start Mon Mar 30 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47183 * 2 1 4 4 C 1.53002 * 109.47018 * 120.00296 * 2 1 3 5 5 N 1.46504 * 109.47029 * 174.19392 * 4 2 1 6 6 C 1.46504 * 119.99390 * 276.40028 * 5 4 2 7 7 C 1.50704 * 109.46991 * 269.99936 * 6 5 4 8 8 H 1.07998 * 119.99753 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99908 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00219 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46733 * 90.00361 * 11 9 7 13 13 H 1.48501 * 109.47093 * 210.00148 * 11 9 7 14 14 H 1.48494 * 109.46901 * 330.00537 * 11 9 7 15 15 C 1.34773 * 120.00279 * 96.39970 * 5 4 2 16 16 O 1.21285 * 119.99983 * 185.28591 * 15 5 4 17 17 C 1.50705 * 119.99938 * 5.28754 * 15 5 4 18 18 H 1.08994 * 110.42180 * 326.93569 * 17 15 5 19 19 C 1.54904 * 110.37385 * 89.25281 * 17 15 5 20 20 C 1.55134 * 101.65593 * 155.90061 * 19 17 15 21 21 H 1.08997 * 110.70807 * 205.96555 * 20 19 17 22 22 F 1.39900 * 110.71018 * 82.72620 * 20 19 17 23 23 C 1.54323 * 103.01716 * 324.34488 * 20 19 17 24 24 N 1.47438 * 107.23188 * 22.28198 * 23 20 19 25 25 H 1.08995 * 109.47305 * 300.00146 * 1 2 3 26 26 H 1.09004 * 109.47209 * 59.99936 * 1 2 3 27 27 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47252 * 239.99690 * 2 1 3 29 29 H 1.09008 * 109.47374 * 55.70569 * 3 2 1 30 30 H 1.08999 * 109.47413 * 175.70383 * 3 2 1 31 31 H 1.09004 * 109.47371 * 295.70560 * 3 2 1 32 32 H 1.08990 * 109.47283 * 54.18730 * 4 2 1 33 33 H 1.09005 * 109.46701 * 294.18510 * 4 2 1 34 34 H 1.08991 * 109.47206 * 30.00145 * 6 5 4 35 35 H 1.08998 * 109.46706 * 150.00360 * 6 5 4 36 36 H 0.96996 * 120.00259 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.99288 * 37.80234 * 19 17 15 38 38 H 1.09006 * 111.02151 * 274.00484 * 19 17 15 39 39 H 1.09007 * 109.88564 * 262.87752 * 23 20 19 40 40 H 1.09000 * 109.88790 * 141.69083 * 23 20 19 41 41 H 1.00899 * 110.99847 * 123.26153 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.4983 -0.8435 1.1814 6 6 4.1069 -1.9457 0.4322 7 6 4.3027 -3.1271 1.3471 8 1 4.0041 -3.0632 2.3830 9 6 4.8640 -4.2891 0.8618 10 7 5.0344 -5.3204 1.6601 11 14 5.3810 -4.3994 -0.9298 12 1 6.7914 -3.9550 -1.0662 13 1 5.2575 -5.8042 -1.3951 14 1 4.5053 -3.5267 -1.7523 15 6 4.2800 0.0579 1.8081 16 8 5.4845 0.0136 1.6736 17 6 3.6573 1.1209 2.6762 18 1 2.6859 1.4153 2.2791 19 6 3.5133 0.6122 4.1322 20 6 3.4847 1.9435 4.9280 21 1 3.8385 1.7908 5.9476 22 9 2.1982 2.4933 4.9265 23 6 4.4623 2.8406 4.1399 24 7 4.5509 2.2948 2.7731 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6151 1.9781 0.8491 30 1 3.1272 1.4434 0.0770 31 1 1.7408 1.9336 -0.9260 32 1 1.5942 -1.7145 1.3028 33 1 1.7641 -0.1509 2.1362 34 1 3.4530 -2.2291 -0.3924 35 1 5.0719 -1.6276 0.0379 36 1 5.4289 -6.1381 1.3186 37 1 4.3706 0.0036 4.4198 38 1 2.5830 0.0591 4.2629 39 1 5.4450 2.8216 4.6112 40 1 4.0840 3.8623 4.1075 41 1 4.3053 2.9937 2.0881 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707427161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:39 Heat of formation + Delta-G solvation = -108.751621 kcal Electronic energy + Delta-G solvation = -22528.045769 eV Core-core repulsion = 19163.117092 eV Total energy + Delta-G solvation = -3364.928677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.164 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.71389 -41.22806 -38.42192 -37.66021 -35.42287 -34.19035 -31.41987 -30.85976 -29.51020 -28.03597 -26.96900 -25.08489 -22.87436 -22.24355 -21.41508 -19.77242 -19.08921 -18.65619 -17.90939 -17.24139 -16.87993 -16.41015 -16.06226 -15.93462 -15.59323 -15.35390 -14.82906 -14.59340 -14.50425 -14.10024 -13.93511 -13.71471 -13.48492 -13.24898 -13.12743 -12.84366 -12.78407 -12.62947 -12.50458 -12.30087 -12.03196 -11.96009 -11.90164 -11.82800 -11.71089 -11.52275 -10.83944 -10.67155 -9.46677 -9.32649 -8.35035 -6.39503 1.30607 1.34757 1.42871 1.75316 2.16347 2.29584 2.99063 3.10860 3.18466 3.35526 3.67333 3.79876 3.82816 3.91416 3.99147 4.05691 4.25300 4.26507 4.43666 4.55773 4.65603 4.70732 4.74570 4.79881 4.83538 4.89665 4.93757 5.03638 5.04982 5.09809 5.25418 5.37284 5.45015 5.46521 5.59052 5.70203 6.23825 6.29642 6.61457 6.73627 7.21611 7.47243 8.81652 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.006354 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.168096 B = 4405.518568 C = 5143.002395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.108 3.892 5 N -0.598 5.598 6 C 0.228 3.772 7 C -0.535 4.535 8 H 0.032 0.968 9 C 0.014 3.986 10 N -0.943 5.943 11 Si 0.943 3.057 12 H -0.277 1.277 13 H -0.273 1.273 14 H -0.241 1.241 15 C 0.513 3.487 16 O -0.577 6.577 17 C 0.063 3.937 18 H 0.104 0.896 19 C -0.146 4.146 20 C 0.075 3.925 21 H 0.129 0.871 22 F -0.212 7.212 23 C 0.030 3.970 24 N -0.679 5.679 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.015 0.985 36 H 0.268 0.732 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 17.813 1.248 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.015 4.015 5 N -0.329 5.329 6 C 0.105 3.895 7 C -0.573 4.573 8 H 0.050 0.950 9 C -0.184 4.184 10 N -0.583 5.583 11 Si 0.766 3.234 12 H -0.203 1.203 13 H -0.198 1.198 14 H -0.164 1.164 15 C 0.301 3.699 16 O -0.455 6.455 17 C -0.050 4.050 18 H 0.121 0.879 19 C -0.185 4.185 20 C 0.039 3.961 21 H 0.146 0.854 22 F -0.193 7.193 23 C -0.098 4.098 24 N -0.311 5.311 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.266 17.263 1.281 19.634 hybrid contribution -0.174 -0.522 -0.585 0.803 sum -9.440 16.741 0.696 19.232 Atomic orbital electron populations 1.21721 0.92258 1.02402 1.03050 1.21526 0.97607 0.96632 0.97564 1.21910 0.99782 0.95521 1.02956 1.21881 0.78647 1.01659 0.99286 1.47948 1.07335 1.26373 1.51220 1.19238 0.93820 0.84508 0.91915 1.21556 1.41163 0.97619 0.96983 0.94958 1.25786 0.94884 0.94979 1.02777 1.70037 1.45713 1.04594 1.37966 0.85782 0.79470 0.78321 0.79820 1.20284 1.19803 1.16433 1.20912 0.86663 0.82508 0.79860 1.90614 1.16845 1.74564 1.63522 1.22448 0.95735 0.91005 0.95763 0.87906 1.23263 1.04503 0.98209 0.92517 1.22852 0.78857 0.91762 1.02670 0.85359 1.92817 1.41539 1.86844 1.98060 1.23331 1.00228 0.98256 0.88031 1.61214 1.55330 1.08455 1.06068 0.91247 0.91175 0.92549 0.92319 0.91097 0.94979 0.91056 0.91075 0.89032 0.93737 0.96671 0.92266 0.90455 0.88138 0.88249 0.88919 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.11 -2.80 3.11 -10.80 -0.03 -2.84 16 3 C -0.14 -3.16 7.83 71.98 0.56 -2.59 16 4 C 0.11 3.32 4.86 86.38 0.42 3.74 16 5 N -0.60 -24.72 2.25 -826.14 -1.86 -26.57 16 6 C 0.23 11.37 4.29 85.63 0.37 11.73 16 7 C -0.53 -31.75 9.94 25.60 0.25 -31.50 16 8 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 9 C 0.01 0.83 5.47 84.65 0.46 1.29 16 10 N -0.94 -59.84 13.96 21.45 0.30 -59.54 16 11 Si 0.94 45.22 27.47 68.60 1.88 47.10 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 15 C 0.51 21.38 5.54 87.66 0.49 21.87 16 16 O -0.58 -30.16 16.21 -3.04 -0.05 -30.21 16 17 C 0.06 1.87 2.23 44.64 0.10 1.97 16 18 H 0.10 2.52 3.96 -2.39 -0.01 2.51 16 19 C -0.15 -3.96 6.17 31.98 0.20 -3.76 16 20 C 0.08 1.49 4.75 31.77 0.15 1.64 16 21 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 22 F -0.21 -4.45 17.19 44.97 0.77 -3.68 16 23 C 0.03 0.59 7.40 86.65 0.64 1.23 16 24 N -0.68 -18.15 6.69 -486.27 -3.25 -21.40 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.66 8.03 -2.38 -0.02 1.64 16 29 H 0.07 1.26 6.94 -2.38 -0.02 1.25 16 30 H 0.03 0.87 6.17 -2.39 -0.01 0.85 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 33 H 0.09 2.36 5.59 -2.38 -0.01 2.35 16 34 H 0.04 2.07 7.02 -2.39 -0.02 2.05 16 35 H 0.02 0.83 6.78 -2.39 -0.02 0.81 16 36 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 38 H 0.10 2.52 7.81 -2.38 -0.02 2.50 16 39 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.09 1.35 8.11 -2.39 -0.02 1.33 16 41 H 0.35 7.90 8.91 -89.69 -0.80 7.10 16 Total: -1.00 -77.30 326.03 2.24 -75.06 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.17 Total: 18.27 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.27 Total: 0.97 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.81 Total: -107.51 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.77 Total: -3.68 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -77.30 2.24 -75.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707427161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.696 kcal (2) G-P(sol) polarization free energy of solvation -77.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds