Wall clock time and date at job start Mon Mar 30 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47097 * 270.00245 * 3 2 1 5 5 H 1.48505 * 109.46846 * 29.99875 * 3 2 1 6 6 H 1.48497 * 109.47507 * 149.99838 * 3 2 1 7 7 C 1.37879 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99737 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00130 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.42897 * 113.99887 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46936 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47156 * 62.29696 * 12 11 10 14 14 C 1.46839 * 111.00116 * 52.14296 * 13 12 11 15 15 C 1.53033 * 109.52484 * 185.84250 * 14 13 12 16 16 C 1.53123 * 109.27901 * 300.81872 * 15 14 13 17 17 C 1.53120 * 109.15635 * 57.65515 * 16 15 14 18 18 H 1.08994 * 109.50575 * 62.28960 * 17 16 15 19 19 N 1.46905 * 109.53414 * 182.38815 * 17 16 15 20 20 C 1.46897 * 110.99760 * 274.90216 * 19 17 16 21 21 C 1.53001 * 109.47112 * 180.02562 * 20 19 17 22 22 O 1.42893 * 109.47307 * 64.99608 * 21 20 19 23 23 C 1.46846 * 111.00211 * 176.35554 * 13 12 11 24 24 H 0.96997 * 120.00174 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46856 * 60.00724 * 9 7 2 26 26 H 1.08998 * 109.47602 * 300.00364 * 9 7 2 27 27 H 1.08993 * 109.47100 * 60.00659 * 11 10 9 28 28 H 1.09001 * 109.47525 * 300.00517 * 11 10 9 29 29 H 1.09006 * 109.46957 * 302.29773 * 12 11 10 30 30 H 1.08997 * 109.47482 * 182.29529 * 12 11 10 31 31 H 1.09009 * 109.46189 * 305.85652 * 14 13 12 32 32 H 1.09001 * 109.46461 * 65.82013 * 14 13 12 33 33 H 1.09003 * 109.50619 * 60.75898 * 15 14 13 34 34 H 1.08999 * 109.50441 * 180.84035 * 15 14 13 35 35 H 1.08998 * 109.52447 * 297.75220 * 16 15 14 36 36 H 1.08995 * 109.52272 * 177.55847 * 16 15 14 37 37 H 1.00905 * 111.00050 * 150.94565 * 19 17 16 38 38 H 1.09001 * 109.47025 * 299.99877 * 20 19 17 39 39 H 1.08996 * 109.47568 * 59.99914 * 20 19 17 40 40 H 1.09005 * 109.46955 * 185.00328 * 21 20 19 41 41 H 1.09009 * 109.46679 * 304.99497 * 21 20 19 42 42 H 0.96698 * 114.00043 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.46445 * 54.14150 * 23 13 12 44 44 H 1.08999 * 109.46231 * 294.17593 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0000 10 8 3.9880 -2.5412 0.0013 11 6 5.4125 -2.6540 0.0003 12 6 5.8071 -4.1322 0.0012 13 7 5.3103 -4.7724 -1.2242 14 6 5.7271 -4.0225 -2.4158 15 6 5.0736 -4.6320 -3.6582 16 6 5.4942 -6.0990 -3.7825 17 6 5.0917 -6.8469 -2.5084 18 1 4.0076 -6.8206 -2.3982 19 7 5.5422 -8.2424 -2.5948 20 6 4.5614 -9.0688 -3.3110 21 6 5.0642 -10.5122 -3.3801 22 8 5.1273 -11.0583 -2.0611 23 6 5.7446 -6.1731 -1.2994 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 0.8896 26 1 3.8746 -0.6807 -0.8904 27 1 5.8159 -2.1694 0.8893 28 1 5.8146 -2.1715 -0.8906 29 1 5.3709 -4.6242 0.8706 30 1 6.8929 -4.2185 0.0416 31 1 5.4182 -2.9818 -2.3165 32 1 6.8115 -4.0714 -2.5149 33 1 3.9892 -4.5709 -3.5660 34 1 5.3950 -4.0844 -4.5441 35 1 6.5747 -6.1584 -3.9137 36 1 4.9968 -6.5491 -4.6416 37 1 5.7314 -8.6188 -1.6779 38 1 3.6083 -9.0413 -2.7827 39 1 4.4282 -8.6814 -4.3211 40 1 4.3809 -11.1063 -3.9870 41 1 6.0575 -10.5299 -3.8287 42 1 5.4392 -11.9730 -2.0286 43 1 5.4485 -6.6946 -0.3892 44 1 6.8289 -6.2120 -1.4036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708582589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:55 Heat of formation + Delta-G solvation = -92.660874 kcal Electronic energy + Delta-G solvation = -21503.356577 eV Core-core repulsion = 18262.585953 eV Total energy + Delta-G solvation = -3240.770625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.37911 -37.65219 -36.78609 -35.25350 -33.01051 -32.43482 -30.62405 -29.11999 -27.40714 -27.06847 -24.09711 -22.74143 -22.01693 -21.78893 -20.61168 -19.58054 -17.87924 -16.81884 -16.37025 -15.85572 -15.64013 -15.46647 -15.11615 -14.54133 -14.38037 -14.15667 -14.02781 -13.88034 -13.22336 -13.16264 -12.68226 -12.45357 -12.39087 -12.30516 -12.04758 -11.58477 -11.39991 -11.16589 -10.93830 -10.74679 -10.69865 -10.63347 -10.38501 -10.28911 -10.08073 -9.81802 -9.12190 -8.78272 -8.56569 -8.40461 -8.04103 -6.07278 -4.05532 3.26667 3.33553 3.35125 3.71856 3.97997 4.29636 4.38729 4.65986 4.76017 4.87846 4.93697 5.01648 5.10265 5.18859 5.23864 5.27270 5.40000 5.47952 5.52934 5.56088 5.58809 5.60278 5.75467 5.78445 5.84409 5.94338 6.01961 6.05273 6.09713 6.22008 6.28261 6.47765 6.64289 6.88546 7.04068 7.20170 7.28260 7.31073 7.37522 7.64831 8.09656 8.73213 9.06357 9.52486 11.05943 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.027192 B = 0.003321 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.454026 B = 8427.916498 C = 8662.500098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.167 3.833 10 O -0.363 6.363 11 C 0.056 3.944 12 C 0.064 3.936 13 N -0.521 5.521 14 C 0.052 3.948 15 C -0.118 4.118 16 C -0.104 4.104 17 C 0.088 3.912 18 H 0.057 0.943 19 N -0.685 5.685 20 C 0.059 3.941 21 C 0.076 3.924 22 O -0.575 6.575 23 C 0.058 3.942 24 H 0.266 0.734 25 H 0.000 1.000 26 H -0.004 1.004 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.347 0.653 38 H 0.039 0.961 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.379 0.621 43 H 0.071 0.929 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.133 -17.422 -7.349 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.281 6.281 11 C -0.022 4.022 12 C -0.064 4.064 13 N -0.246 5.246 14 C -0.075 4.075 15 C -0.156 4.156 16 C -0.142 4.142 17 C -0.022 4.022 18 H 0.075 0.925 19 N -0.317 5.317 20 C -0.071 4.071 21 C -0.002 4.002 22 O -0.381 6.381 23 C -0.070 4.070 24 H 0.076 0.924 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.166 0.834 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.488 -16.745 -7.727 23.452 hybrid contribution 0.925 0.555 0.435 1.163 sum 15.413 -16.190 -7.292 23.512 Atomic orbital electron populations 1.69876 1.06041 1.26975 1.50648 1.24771 0.94787 0.98682 0.94800 0.86862 0.80346 0.83886 0.78700 1.19994 1.20843 1.19168 1.20896 0.88302 0.95281 1.50716 0.89906 1.20588 0.96225 0.79968 0.94033 1.88039 1.16604 1.28643 1.94859 1.22438 0.85928 0.94710 0.99081 1.22107 0.96375 0.94739 0.93194 1.61735 1.60182 1.00827 1.01902 1.22185 0.96386 0.99096 0.89868 1.21583 1.02191 0.95018 0.96832 1.21555 1.01127 0.94815 0.96736 1.21527 0.98428 0.87146 0.95069 0.92509 1.60537 1.44715 1.01771 1.24703 1.22020 0.93977 0.91175 0.99880 1.22264 1.00070 0.93842 0.84005 1.86465 1.90196 1.32720 1.28706 1.22132 0.97333 0.89831 0.97720 0.92441 0.98241 0.98672 0.94057 0.94201 0.89952 0.94375 0.89640 0.95623 0.90596 0.91517 0.91903 0.92349 0.83380 0.94283 0.89742 0.93355 0.92767 0.77416 0.91104 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.51 -15.58 9.99 -34.44 -0.34 -15.93 16 8 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 9 C 0.17 4.33 4.76 36.00 0.17 4.50 16 10 O -0.36 -8.64 10.23 -35.23 -0.36 -9.00 16 11 C 0.06 1.01 5.57 37.16 0.21 1.21 16 12 C 0.06 0.96 5.52 -3.82 -0.02 0.94 16 13 N -0.52 -8.06 4.67 -234.67 -1.10 -9.16 16 14 C 0.05 0.75 5.04 -3.84 -0.02 0.73 16 15 C -0.12 -1.54 6.09 -26.65 -0.16 -1.70 16 16 C -0.10 -1.21 5.49 -26.61 -0.15 -1.36 16 17 C 0.09 1.08 2.65 -67.63 -0.18 0.90 16 18 H 0.06 0.81 7.80 -51.93 -0.41 0.40 16 19 N -0.68 -7.36 6.31 -106.64 -0.67 -8.03 16 20 C 0.06 0.56 5.91 -3.82 -0.02 0.54 16 21 C 0.08 0.58 7.38 37.16 0.27 0.85 16 22 O -0.58 -4.80 13.18 -35.23 -0.46 -5.26 16 23 C 0.06 0.76 4.73 -3.84 -0.02 0.74 16 24 H 0.27 7.69 8.31 -40.82 -0.34 7.36 16 25 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 26 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.67 6.05 -51.93 -0.31 0.36 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.38 5.79 -51.92 -0.30 1.08 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.63 7.53 -51.93 -0.39 0.24 16 37 H 0.35 3.80 7.92 -39.29 -0.31 3.49 16 38 H 0.04 0.42 8.06 -51.93 -0.42 0.00 16 39 H 0.08 0.74 7.50 -51.93 -0.39 0.35 16 40 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 42 H 0.38 1.44 9.12 45.56 0.42 1.86 16 43 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -33.58 345.61 -8.76 -42.34 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.12 Total: 0.73 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -0.36 Total: -6.55 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -1.00 Total: -44.49 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.82 Total: -14.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.58 -8.76 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708582589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.319 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds