Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00024 * 2 1 4 4 H 1.48500 * 109.47097 * 270.00245 * 3 2 1 5 5 H 1.48505 * 109.46846 * 29.99875 * 3 2 1 6 6 H 1.48497 * 109.47507 * 149.99838 * 3 2 1 7 7 C 1.37879 * 120.00426 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99737 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00130 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.47157 * 179.97438 * 9 7 2 11 11 C 1.42897 * 113.99887 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46936 * 180.02562 * 11 10 9 13 13 N 1.46904 * 109.47156 * 62.29696 * 12 11 10 14 14 C 1.46839 * 111.00116 * 52.14296 * 13 12 11 15 15 C 1.53033 * 109.52484 * 185.84250 * 14 13 12 16 16 C 1.53123 * 109.27901 * 300.81872 * 15 14 13 17 17 C 1.53120 * 109.15635 * 57.65515 * 16 15 14 18 18 H 1.08994 * 109.50575 * 62.28960 * 17 16 15 19 19 N 1.46905 * 109.53414 * 182.38815 * 17 16 15 20 20 C 1.46897 * 110.99760 * 274.90216 * 19 17 16 21 21 C 1.53001 * 109.47112 * 180.02562 * 20 19 17 22 22 O 1.42893 * 109.47307 * 64.99608 * 21 20 19 23 23 C 1.46846 * 111.00211 * 176.35554 * 13 12 11 24 24 H 0.96997 * 120.00174 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46856 * 60.00724 * 9 7 2 26 26 H 1.08998 * 109.47602 * 300.00364 * 9 7 2 27 27 H 1.08993 * 109.47100 * 60.00659 * 11 10 9 28 28 H 1.09001 * 109.47525 * 300.00517 * 11 10 9 29 29 H 1.09006 * 109.46957 * 302.29773 * 12 11 10 30 30 H 1.08997 * 109.47482 * 182.29529 * 12 11 10 31 31 H 1.09009 * 109.46189 * 305.85652 * 14 13 12 32 32 H 1.09001 * 109.46461 * 65.82013 * 14 13 12 33 33 H 1.09003 * 109.50619 * 60.75898 * 15 14 13 34 34 H 1.08999 * 109.50441 * 180.84035 * 15 14 13 35 35 H 1.08998 * 109.52447 * 297.75220 * 16 15 14 36 36 H 1.08995 * 109.52272 * 177.55847 * 16 15 14 37 37 H 1.00905 * 111.00050 * 150.94565 * 19 17 16 38 38 H 1.09001 * 109.47025 * 299.99877 * 20 19 17 39 39 H 1.08996 * 109.47568 * 59.99914 * 20 19 17 40 40 H 1.09005 * 109.46955 * 185.00328 * 21 20 19 41 41 H 1.09009 * 109.46679 * 304.99497 * 21 20 19 42 42 H 0.96698 * 114.00043 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.46445 * 54.14150 * 23 13 12 44 44 H 1.08999 * 109.46231 * 294.17593 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0000 10 8 3.9880 -2.5412 0.0013 11 6 5.4125 -2.6540 0.0003 12 6 5.8071 -4.1322 0.0012 13 7 5.3103 -4.7724 -1.2242 14 6 5.7271 -4.0225 -2.4158 15 6 5.0736 -4.6320 -3.6582 16 6 5.4942 -6.0990 -3.7825 17 6 5.0917 -6.8469 -2.5084 18 1 4.0076 -6.8206 -2.3982 19 7 5.5422 -8.2424 -2.5948 20 6 4.5614 -9.0688 -3.3110 21 6 5.0642 -10.5122 -3.3801 22 8 5.1273 -11.0583 -2.0611 23 6 5.7446 -6.1731 -1.2994 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6796 0.8896 26 1 3.8746 -0.6807 -0.8904 27 1 5.8159 -2.1694 0.8893 28 1 5.8146 -2.1715 -0.8906 29 1 5.3709 -4.6242 0.8706 30 1 6.8929 -4.2185 0.0416 31 1 5.4182 -2.9818 -2.3165 32 1 6.8115 -4.0714 -2.5149 33 1 3.9892 -4.5709 -3.5660 34 1 5.3950 -4.0844 -4.5441 35 1 6.5747 -6.1584 -3.9137 36 1 4.9968 -6.5491 -4.6416 37 1 5.7314 -8.6188 -1.6779 38 1 3.6083 -9.0413 -2.7827 39 1 4.4282 -8.6814 -4.3211 40 1 4.3809 -11.1063 -3.9870 41 1 6.0575 -10.5299 -3.8287 42 1 5.4392 -11.9730 -2.0286 43 1 5.4485 -6.6946 -0.3892 44 1 6.8289 -6.2120 -1.4036 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708582589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = -121.687524 kcal Electronic energy + Delta-G solvation = -21504.615267 eV Core-core repulsion = 18262.585953 eV Total energy + Delta-G solvation = -3242.029315 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 272.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46166 -38.73794 -38.02270 -36.27921 -34.87371 -33.88500 -31.61867 -30.68162 -29.10126 -28.01267 -25.24666 -23.95251 -23.80339 -22.79851 -21.77672 -20.63516 -19.03072 -18.48547 -17.60319 -17.39057 -16.75289 -16.49661 -16.30124 -16.07554 -15.75152 -15.37964 -15.10207 -14.85790 -14.71005 -14.29749 -14.24860 -13.77260 -13.62840 -13.34370 -13.17711 -13.05425 -12.76307 -12.50491 -12.34743 -12.18362 -12.02495 -11.82880 -11.69974 -11.41459 -11.33635 -11.19413 -10.91284 -10.88984 -10.27901 -9.47064 -9.14849 -8.36721 -6.44376 1.32420 1.36098 1.46986 2.29509 2.71614 2.95604 3.09518 3.37769 3.46544 3.74836 3.90007 4.06726 4.11434 4.18408 4.26223 4.31456 4.35786 4.41875 4.45509 4.54033 4.55944 4.61222 4.62654 4.69523 4.79851 4.88667 4.90568 4.93808 4.97289 5.03346 5.04708 5.09615 5.23003 5.42861 5.45091 5.94397 5.96221 6.16089 6.23295 6.41998 6.60117 6.80852 6.92927 7.20284 8.80813 Molecular weight = 272.19amu Principal moments of inertia in cm(-1) A = 0.027192 B = 0.003321 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.454026 B = 8427.916498 C = 8662.500098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.542 4.542 8 H 0.026 0.974 9 C 0.180 3.820 10 O -0.392 6.392 11 C 0.048 3.952 12 C 0.068 3.932 13 N -0.552 5.552 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.095 4.095 17 C 0.092 3.908 18 H 0.028 0.972 19 N -0.677 5.677 20 C 0.054 3.946 21 C 0.081 3.919 22 O -0.597 6.597 23 C 0.064 3.936 24 H 0.273 0.727 25 H 0.010 0.990 26 H 0.008 0.992 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.346 0.654 38 H 0.020 0.980 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.398 0.602 43 H 0.068 0.932 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.099 -16.965 -7.986 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.580 4.580 8 H 0.044 0.956 9 C 0.104 3.896 10 O -0.312 6.312 11 C -0.029 4.029 12 C -0.060 4.060 13 N -0.277 5.277 14 C -0.074 4.074 15 C -0.155 4.155 16 C -0.133 4.133 17 C -0.018 4.018 18 H 0.046 0.954 19 N -0.309 5.309 20 C -0.075 4.075 21 C 0.003 3.997 22 O -0.406 6.406 23 C -0.064 4.064 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.165 0.835 38 H 0.038 0.962 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.248 0.752 43 H 0.086 0.914 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 17.475 -16.335 -8.365 25.342 hybrid contribution -0.061 0.270 0.639 0.696 sum 17.415 -16.066 -7.726 24.921 Atomic orbital electron populations 1.70040 1.08316 1.28749 1.51252 1.25876 0.95823 1.03480 0.93498 0.85579 0.79418 0.77347 0.79789 1.18355 1.19812 1.16839 1.21156 0.91092 0.93663 1.52107 0.95575 1.20281 0.93196 0.81409 0.94740 1.87993 1.20627 1.27428 1.95104 1.22792 0.82609 0.97078 1.00444 1.22077 0.98185 0.92781 0.92911 1.61692 1.61532 1.02139 1.02386 1.22149 0.97571 0.97791 0.89861 1.21569 1.00258 0.96410 0.97221 1.21472 1.01677 0.93579 0.96563 1.21436 0.96666 0.88322 0.95409 0.95428 1.60592 1.44669 1.01020 1.24618 1.22134 0.93000 0.92654 0.99757 1.22226 1.00851 0.92560 0.84036 1.86415 1.90499 1.34469 1.29201 1.22101 0.98018 0.88442 0.97854 0.91827 0.97213 0.97437 0.92381 0.92901 0.90740 0.90961 0.91826 0.93515 0.93551 0.89694 0.90828 0.91515 0.83525 0.96176 0.88993 0.91583 0.91914 0.75219 0.91356 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.01 0.66 5.47 84.66 0.46 1.12 16 3 Si 0.96 44.13 27.47 68.60 1.88 46.01 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.54 -34.08 9.99 25.60 0.26 -33.83 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 C 0.18 9.26 4.76 71.23 0.34 9.60 16 10 O -0.39 -18.88 10.23 -148.98 -1.52 -20.41 16 11 C 0.05 1.64 5.57 71.98 0.40 2.04 16 12 C 0.07 1.96 5.52 86.30 0.48 2.43 16 13 N -0.55 -16.76 4.67 -896.37 -4.18 -20.95 16 14 C 0.05 1.49 5.04 86.33 0.44 1.92 16 15 C -0.12 -2.98 6.09 30.65 0.19 -2.79 16 16 C -0.09 -2.09 5.49 30.68 0.17 -1.92 16 17 C 0.09 2.22 2.65 44.97 0.12 2.34 16 18 H 0.03 0.83 7.80 -2.39 -0.02 0.81 16 19 N -0.68 -13.91 6.31 -491.31 -3.10 -17.01 16 20 C 0.05 1.00 5.91 86.30 0.51 1.51 16 21 C 0.08 1.10 7.38 71.98 0.53 1.63 16 22 O -0.60 -9.18 13.18 -148.98 -1.96 -11.14 16 23 C 0.06 1.59 4.73 86.33 0.41 2.00 16 24 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 25 H 0.01 0.50 7.20 -2.38 -0.02 0.48 16 26 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 1.69 6.05 -2.39 -0.01 1.67 16 29 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.03 5.79 -2.38 -0.01 2.01 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.36 7.53 -2.39 -0.02 1.34 16 37 H 0.35 7.28 7.92 -89.69 -0.71 6.57 16 38 H 0.02 0.44 8.06 -2.39 -0.02 0.42 16 39 H 0.09 1.53 7.50 -2.39 -0.02 1.51 16 40 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.40 2.39 9.12 -74.06 -0.68 1.72 16 43 H 0.07 1.71 8.11 -2.39 -0.02 1.69 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -75.21 345.61 -4.76 -79.97 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -0.47 Total: 17.89 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 4.29 Total: -13.94 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -6.99 Total: -98.38 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -3.49 Total: -31.55 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -75.21 -4.76 -79.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708582589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.718 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds