Wall clock time and date at job start Mon Mar 30 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99897 * 2 1 4 4 C 1.50703 * 109.46603 * 269.99877 * 3 2 1 5 5 H 1.08004 * 120.00258 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99993 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99987 * 180.27074 * 6 4 3 8 8 Si 1.86803 * 119.99720 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.47182 * 90.00298 * 8 6 4 10 10 H 1.48499 * 109.46963 * 210.00315 * 8 6 4 11 11 H 1.48496 * 109.47082 * 330.00107 * 8 6 4 12 12 C 1.34777 * 119.99952 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99907 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00053 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.47104 * 179.97438 * 14 12 2 16 16 C 1.46895 * 111.00119 * 66.04297 * 15 14 12 17 17 C 1.46904 * 111.00119 * 190.00360 * 15 14 12 18 18 H 1.09006 * 110.44988 * 301.47423 * 17 15 14 19 19 C 1.54473 * 110.51202 * 178.72445 * 17 15 14 20 20 O 1.44430 * 104.80210 * 217.37575 * 19 17 15 21 21 C 1.44423 * 105.27515 * 40.50706 * 20 19 17 22 22 C 1.54474 * 104.80534 * 319.49110 * 21 20 19 23 23 H 1.09003 * 110.51119 * 142.62077 * 22 21 20 24 24 O 1.42907 * 110.62817 * 265.27676 * 22 21 20 25 25 H 1.09003 * 109.47179 * 90.00535 * 1 2 3 26 26 H 1.09002 * 109.47576 * 210.00147 * 1 2 3 27 27 H 1.08997 * 109.47822 * 330.00498 * 1 2 3 28 28 H 1.08987 * 109.47464 * 149.99874 * 3 2 1 29 29 H 1.08997 * 109.47298 * 29.98961 * 3 2 1 30 30 H 0.97005 * 119.99681 * 179.71900 * 7 6 4 31 31 H 1.08997 * 109.47101 * 299.99952 * 14 12 2 32 32 H 1.08999 * 109.47334 * 59.99594 * 14 12 2 33 33 H 1.08993 * 109.46942 * 54.49091 * 16 15 14 34 34 H 1.09000 * 109.47143 * 174.48330 * 16 15 14 35 35 H 1.08999 * 109.47289 * 294.48960 * 16 15 14 36 36 H 1.09003 * 110.36927 * 336.19781 * 19 17 15 37 37 H 1.08998 * 110.37870 * 98.54194 * 19 17 15 38 38 H 1.09002 * 110.36873 * 200.65766 * 21 20 19 39 39 H 1.08999 * 110.46253 * 78.37478 * 21 20 19 40 40 H 0.96693 * 113.99873 * 294.70960 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2418 6 6 3.1268 2.8774 -1.6730 7 7 3.3413 3.2596 -2.9129 8 14 3.7338 3.9287 -0.2532 9 1 5.1069 3.5069 0.1235 10 1 3.7496 5.3553 -0.6651 11 1 2.8272 3.7597 0.9108 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3400 -3.5888 0.0005 16 6 3.1054 -3.6271 1.2537 17 6 1.6556 -4.8667 -0.2377 18 1 0.8965 -5.0402 0.5252 19 6 2.6732 -6.0285 -0.2672 20 8 2.1861 -6.9196 -1.2942 21 6 1.7313 -6.0586 -2.3607 22 6 1.0216 -4.8869 -1.6466 23 1 1.2162 -3.9488 -2.1664 24 8 -0.3843 -5.1276 -1.5597 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 3.1498 1.1385 0.5138 29 1 1.6083 2.0284 0.5136 30 1 3.8149 4.0874 -3.0901 31 1 0.7584 -2.5298 0.8903 32 1 0.7590 -2.5302 -0.8896 33 1 2.4175 -3.6534 2.0988 34 1 3.7335 -4.5178 1.2688 35 1 3.7329 -2.7387 1.3235 36 1 3.6650 -5.6577 -0.5258 37 1 2.6966 -6.5371 0.6966 38 1 1.0311 -6.5903 -3.0051 39 1 2.5775 -5.6923 -2.9419 40 1 -0.8331 -5.1506 -2.4159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708595096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:03 Heat of formation + Delta-G solvation = -99.869908 kcal Electronic energy + Delta-G solvation = -22013.903715 eV Core-core repulsion = 18636.987389 eV Total energy + Delta-G solvation = -3376.916326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28510 -39.04294 -36.35503 -36.23238 -34.81871 -32.55802 -30.29889 -29.49836 -28.49084 -27.43830 -25.88478 -24.56580 -22.63783 -22.11314 -20.37674 -18.45614 -17.73108 -17.04075 -16.97690 -16.53441 -16.04955 -15.75435 -15.26018 -15.03687 -14.30604 -14.24313 -13.92444 -13.59513 -13.21273 -13.10216 -12.68691 -12.55622 -12.33598 -12.24244 -12.06310 -11.82508 -11.60733 -11.51748 -11.26433 -11.07480 -10.89655 -10.53142 -10.37097 -10.13562 -9.80354 -9.54390 -9.05222 -8.59307 -8.31412 -7.70349 -6.09038 -4.07601 3.25842 3.28849 3.34224 3.35566 3.38655 3.75391 3.84131 4.22041 4.39054 4.42086 4.55549 4.83297 4.97918 5.03486 5.21742 5.24354 5.31742 5.38419 5.39548 5.48130 5.49777 5.55739 5.58017 5.60780 5.71027 5.87090 6.11911 6.21166 6.43386 6.63869 6.82348 6.92966 7.01537 7.32664 7.38924 7.60495 8.22585 8.46683 8.92791 8.99214 9.51243 11.04490 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.004336 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.080798 B = 6456.039468 C = 6573.852316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.600 5.600 3 C 0.217 3.783 4 C -0.528 4.528 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.509 3.491 13 O -0.523 6.523 14 C 0.037 3.963 15 N -0.513 5.513 16 C 0.017 3.983 17 C 0.056 3.944 18 H 0.067 0.933 19 C 0.055 3.945 20 O -0.371 6.371 21 C 0.020 3.980 22 C 0.071 3.929 23 H 0.087 0.913 24 O -0.560 6.560 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.029 0.971 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.021 0.979 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.387 -16.199 5.738 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.333 5.333 3 C 0.097 3.903 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.399 6.399 14 C -0.093 4.093 15 N -0.239 5.239 16 C -0.130 4.130 17 C -0.053 4.053 18 H 0.085 0.915 19 C -0.023 4.023 20 O -0.289 6.289 21 C -0.057 4.057 22 C 0.011 3.989 23 H 0.105 0.895 24 O -0.366 6.366 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -6.190 -16.216 5.892 18.330 hybrid contribution -0.507 0.868 0.509 1.127 sum -6.697 -15.348 6.401 17.927 Atomic orbital electron populations 1.21653 0.81006 1.01662 1.01592 1.47838 1.06225 1.07078 1.72166 1.19665 0.92420 0.79874 0.98389 1.21322 1.36849 1.07169 0.91271 0.90821 1.24860 0.95243 0.97358 0.95564 1.69897 1.41679 1.23407 1.18662 0.86843 0.80109 0.79758 0.82902 1.19897 1.21077 1.19136 1.20090 0.88185 0.84601 0.77674 1.90630 1.13597 1.86733 1.48916 1.22097 0.94194 0.90329 1.02724 1.61700 1.24872 1.00590 1.36709 1.22627 0.97939 1.04649 0.87816 1.22939 0.95454 0.90553 0.96331 0.91485 1.23499 0.97162 0.89114 0.92483 1.89129 1.82027 1.29416 1.28324 1.24115 0.99007 0.91588 0.90985 1.23208 0.81319 0.98129 0.96223 0.89549 1.86508 1.19590 1.95251 1.35240 0.92786 0.92543 0.91313 0.94594 0.95282 0.92571 0.92297 0.88221 0.95995 0.91467 0.88354 0.90400 0.88802 0.88724 0.90873 0.77086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.29 59.85 0.62 1.90 16 2 N -0.60 -12.20 2.86 -182.96 -0.52 -12.73 16 3 C 0.22 5.28 4.27 -5.19 -0.02 5.26 16 4 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 5 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 8 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.51 10.18 7.43 -10.99 -0.08 10.09 16 13 O -0.52 -12.50 13.88 5.56 0.08 -12.42 16 14 C 0.04 0.56 3.80 -4.98 -0.02 0.54 16 15 N -0.51 -7.36 4.28 -234.45 -1.00 -8.36 16 16 C 0.02 0.23 9.01 60.06 0.54 0.77 16 17 C 0.06 0.68 2.64 -66.15 -0.17 0.51 16 18 H 0.07 0.83 8.00 -51.93 -0.42 0.42 16 19 C 0.05 0.61 5.88 37.93 0.22 0.84 16 20 O -0.37 -4.63 11.65 -35.23 -0.41 -5.04 16 21 C 0.02 0.21 7.38 37.93 0.28 0.49 16 22 C 0.07 0.79 3.50 -25.17 -0.09 0.70 16 23 H 0.09 1.03 6.85 -51.93 -0.36 0.68 16 24 O -0.56 -5.79 13.30 -35.23 -0.47 -6.26 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 27 H 0.07 0.97 7.89 -51.93 -0.41 0.56 16 28 H 0.04 0.93 6.85 -51.94 -0.36 0.57 16 29 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.06 0.77 7.33 -51.93 -0.38 0.39 16 32 H 0.10 1.40 6.39 -51.93 -0.33 1.07 16 33 H 0.02 0.26 8.07 -51.93 -0.42 -0.16 16 34 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 35 H 0.10 1.61 6.00 -51.93 -0.31 1.30 16 36 H 0.08 0.90 7.64 -51.93 -0.40 0.50 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.38 2.24 9.12 45.56 0.42 2.65 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -35.46 320.66 -5.83 -41.29 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.27 Total: 1.18 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 0.83 Total: 7.60 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.75 Total: -48.02 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.80 Total: -23.72 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.46 -5.83 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708595096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.583 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds