Wall clock time and date at job start Mon Mar 30 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99897 * 2 1 4 4 C 1.50703 * 109.46603 * 269.99877 * 3 2 1 5 5 H 1.08004 * 120.00258 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99993 * 180.02562 * 4 3 2 7 7 N 1.31509 * 119.99987 * 180.27074 * 6 4 3 8 8 Si 1.86803 * 119.99720 * 359.97438 * 6 4 3 9 9 H 1.48495 * 109.47182 * 90.00298 * 8 6 4 10 10 H 1.48499 * 109.46963 * 210.00315 * 8 6 4 11 11 H 1.48496 * 109.47082 * 330.00107 * 8 6 4 12 12 C 1.34777 * 119.99952 * 179.97438 * 2 1 3 13 13 O 1.21278 * 119.99907 * 180.02562 * 12 2 1 14 14 C 1.50698 * 120.00053 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.47104 * 179.97438 * 14 12 2 16 16 C 1.46895 * 111.00119 * 66.04297 * 15 14 12 17 17 C 1.46904 * 111.00119 * 190.00360 * 15 14 12 18 18 H 1.09006 * 110.44988 * 301.47423 * 17 15 14 19 19 C 1.54473 * 110.51202 * 178.72445 * 17 15 14 20 20 O 1.44430 * 104.80210 * 217.37575 * 19 17 15 21 21 C 1.44423 * 105.27515 * 40.50706 * 20 19 17 22 22 C 1.54474 * 104.80534 * 319.49110 * 21 20 19 23 23 H 1.09003 * 110.51119 * 142.62077 * 22 21 20 24 24 O 1.42907 * 110.62817 * 265.27676 * 22 21 20 25 25 H 1.09003 * 109.47179 * 90.00535 * 1 2 3 26 26 H 1.09002 * 109.47576 * 210.00147 * 1 2 3 27 27 H 1.08997 * 109.47822 * 330.00498 * 1 2 3 28 28 H 1.08987 * 109.47464 * 149.99874 * 3 2 1 29 29 H 1.08997 * 109.47298 * 29.98961 * 3 2 1 30 30 H 0.97005 * 119.99681 * 179.71900 * 7 6 4 31 31 H 1.08997 * 109.47101 * 299.99952 * 14 12 2 32 32 H 1.08999 * 109.47334 * 59.99594 * 14 12 2 33 33 H 1.08993 * 109.46942 * 54.49091 * 16 15 14 34 34 H 1.09000 * 109.47143 * 174.48330 * 16 15 14 35 35 H 1.08999 * 109.47289 * 294.48960 * 16 15 14 36 36 H 1.09003 * 110.36927 * 336.19781 * 19 17 15 37 37 H 1.08998 * 110.37870 * 98.54194 * 19 17 15 38 38 H 1.09002 * 110.36873 * 200.65766 * 21 20 19 39 39 H 1.08999 * 110.46253 * 78.37478 * 21 20 19 40 40 H 0.96693 * 113.99873 * 294.70960 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0981 1.0956 -2.2418 6 6 3.1268 2.8774 -1.6730 7 7 3.3413 3.2596 -2.9129 8 14 3.7338 3.9287 -0.2532 9 1 5.1069 3.5069 0.1235 10 1 3.7496 5.3553 -0.6651 11 1 2.8272 3.7597 0.9108 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 7 2.3400 -3.5888 0.0005 16 6 3.1054 -3.6271 1.2537 17 6 1.6556 -4.8667 -0.2377 18 1 0.8965 -5.0402 0.5252 19 6 2.6732 -6.0285 -0.2672 20 8 2.1861 -6.9196 -1.2942 21 6 1.7313 -6.0586 -2.3607 22 6 1.0216 -4.8869 -1.6466 23 1 1.2162 -3.9488 -2.1664 24 8 -0.3843 -5.1276 -1.5597 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 3.1498 1.1385 0.5138 29 1 1.6083 2.0284 0.5136 30 1 3.8149 4.0874 -3.0901 31 1 0.7584 -2.5298 0.8903 32 1 0.7590 -2.5302 -0.8896 33 1 2.4175 -3.6534 2.0988 34 1 3.7335 -4.5178 1.2688 35 1 3.7329 -2.7387 1.3235 36 1 3.6650 -5.6577 -0.5258 37 1 2.6966 -6.5371 0.6966 38 1 1.0311 -6.5903 -3.0051 39 1 2.5775 -5.6923 -2.9419 40 1 -0.8331 -5.1506 -2.4159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708595096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:02 Heat of formation + Delta-G solvation = -130.872912 kcal Electronic energy + Delta-G solvation = -22015.248106 eV Core-core repulsion = 18636.987389 eV Total energy + Delta-G solvation = -3378.260718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.32912 -40.41786 -37.51386 -37.04920 -36.44766 -34.69737 -31.54199 -30.72322 -29.78013 -28.59498 -27.30267 -25.86705 -23.91845 -23.49223 -21.38234 -19.96882 -19.15021 -18.65010 -18.12059 -17.47395 -17.22377 -17.15477 -16.55715 -16.43485 -15.83139 -15.43627 -15.09508 -14.98754 -14.48742 -14.26703 -14.10269 -13.80250 -13.68633 -13.63902 -13.31272 -13.17035 -12.82657 -12.69877 -12.60215 -12.50569 -12.32973 -12.00127 -11.94208 -11.74072 -11.20814 -10.82690 -10.69663 -10.56859 -9.44885 -9.33741 -8.33553 -6.38498 1.33160 1.37427 1.45623 1.78170 2.12257 2.31513 2.68456 2.94883 3.01056 3.23488 3.55827 3.69890 3.71116 3.96475 4.10187 4.18024 4.28043 4.41882 4.44085 4.48064 4.52853 4.61150 4.67848 4.71503 4.75044 4.77296 4.80100 4.93370 4.96072 5.12346 5.46066 5.55486 5.62649 5.78217 6.01354 6.24789 6.62613 6.70211 6.79667 7.22355 7.44820 8.83618 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.004336 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.080798 B = 6456.039468 C = 6573.852316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.610 5.610 3 C 0.225 3.775 4 C -0.535 4.535 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.276 1.276 11 H -0.237 1.237 12 C 0.499 3.501 13 O -0.572 6.572 14 C 0.052 3.948 15 N -0.533 5.533 16 C 0.021 3.979 17 C 0.059 3.941 18 H 0.071 0.929 19 C 0.055 3.945 20 O -0.386 6.386 21 C 0.019 3.981 22 C 0.074 3.926 23 H 0.075 0.925 24 O -0.568 6.568 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.019 0.981 29 H 0.051 0.949 30 H 0.268 0.732 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -17.032 7.625 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.102 3.898 4 C -0.574 4.574 5 H 0.045 0.955 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.201 1.201 11 H -0.160 1.160 12 C 0.287 3.713 13 O -0.451 6.451 14 C -0.078 4.078 15 N -0.259 5.259 16 C -0.127 4.127 17 C -0.050 4.050 18 H 0.089 0.911 19 C -0.022 4.022 20 O -0.305 6.305 21 C -0.058 4.058 22 C 0.015 3.985 23 H 0.093 0.907 24 O -0.377 6.377 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.100 0.900 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.765 -17.076 7.775 20.306 hybrid contribution -0.074 1.051 -0.189 1.070 sum -7.839 -16.025 7.585 19.385 Atomic orbital electron populations 1.21944 0.77740 1.04385 1.02239 1.47957 1.08359 1.05939 1.71925 1.19344 0.92788 0.82394 0.95244 1.21565 1.36641 1.06727 0.92457 0.95522 1.25866 0.95298 0.98973 0.98623 1.70054 1.42958 1.24334 1.21347 0.85696 0.79559 0.77693 0.79858 1.20219 1.20081 1.16000 1.21051 0.87989 0.86073 0.76181 1.90607 1.15963 1.87613 1.50928 1.21968 0.93751 0.87672 1.04451 1.61616 1.25418 1.01373 1.37493 1.22537 0.98097 1.03864 0.88168 1.22944 0.95623 0.89457 0.96933 0.91070 1.23550 0.96488 0.88927 0.93188 1.89113 1.82165 1.30218 1.28977 1.24227 0.99383 0.91445 0.90772 1.23073 0.81985 0.97870 0.95601 0.90736 1.86463 1.19000 1.95159 1.37062 0.93136 0.88481 0.90007 0.96276 0.93109 0.92299 0.89402 0.87163 0.94228 0.89571 0.91808 0.91141 0.86888 0.86559 0.91059 0.74901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 10.29 127.77 1.31 3.52 16 2 N -0.61 -24.33 2.86 -851.15 -2.43 -26.76 16 3 C 0.22 10.86 4.27 85.63 0.37 11.22 16 4 C -0.54 -31.57 9.94 25.60 0.25 -31.32 16 5 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 6 C 0.01 0.60 5.47 84.66 0.46 1.07 16 7 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 8 Si 0.95 44.35 27.47 68.60 1.88 46.23 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 12 C 0.50 19.84 7.43 87.66 0.65 20.49 16 13 O -0.57 -28.08 13.88 -3.02 -0.04 -28.12 16 14 C 0.05 1.46 3.80 85.56 0.32 1.79 16 15 N -0.53 -14.60 4.28 -895.66 -3.83 -18.43 16 16 C 0.02 0.53 9.01 127.69 1.15 1.68 16 17 C 0.06 1.31 2.64 45.93 0.12 1.43 16 18 H 0.07 1.55 8.00 -2.38 -0.02 1.53 16 19 C 0.06 1.15 5.88 72.48 0.43 1.57 16 20 O -0.39 -8.94 11.65 -148.98 -1.74 -10.68 16 21 C 0.02 0.36 7.38 72.48 0.53 0.89 16 22 C 0.07 1.53 3.50 31.61 0.11 1.64 16 23 H 0.07 1.71 6.85 -2.39 -0.02 1.69 16 24 O -0.57 -10.25 13.30 -148.98 -1.98 -12.23 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.10 1.90 6.44 -2.39 -0.02 1.89 16 27 H 0.08 2.06 7.89 -2.39 -0.02 2.04 16 28 H 0.02 0.99 6.85 -2.39 -0.02 0.98 16 29 H 0.05 2.23 6.95 -2.39 -0.02 2.22 16 30 H 0.27 15.80 8.31 -92.70 -0.77 15.02 16 31 H 0.09 1.97 7.33 -2.39 -0.02 1.95 16 32 H 0.11 2.87 6.39 -2.39 -0.02 2.86 16 33 H 0.04 0.85 8.07 -2.39 -0.02 0.84 16 34 H 0.09 1.81 6.50 -2.39 -0.02 1.79 16 35 H 0.06 2.11 6.00 -2.39 -0.01 2.10 16 36 H 0.07 1.56 7.64 -2.39 -0.02 1.54 16 37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.12 1.66 8.09 -2.39 -0.02 1.65 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.40 3.66 9.12 -74.06 -0.68 2.98 16 Total: -1.00 -79.71 320.66 -1.81 -81.52 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.32 Total: 14.29 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.72 Total: 13.98 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.96 Total: -104.99 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -3.76 Total: -51.03 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -79.71 -1.81 -81.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708595096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.357 kcal (2) G-P(sol) polarization free energy of solvation -79.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds