Wall clock time and date at job start Mon Mar 30 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99923 * 2 1 4 4 C 1.50706 * 109.46724 * 90.00204 * 3 2 1 5 5 H 1.07993 * 120.00176 * 359.72000 * 4 3 2 6 6 C 1.37878 * 119.99929 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00369 * 179.72763 * 6 4 3 8 8 Si 1.86806 * 120.00006 * 359.71760 * 6 4 3 9 9 H 1.48503 * 109.46950 * 90.00563 * 8 6 4 10 10 H 1.48498 * 109.47049 * 210.00448 * 8 6 4 11 11 H 1.48499 * 109.47072 * 330.00885 * 8 6 4 12 12 C 1.34777 * 120.00034 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99598 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99855 * 359.97438 * 12 2 1 15 15 N 1.46903 * 109.46898 * 179.97438 * 14 12 2 16 16 C 1.46894 * 111.00527 * 293.95736 * 15 14 12 17 17 C 1.46903 * 111.00013 * 170.00065 * 15 14 12 18 18 H 1.09003 * 110.80135 * 55.42831 * 17 15 14 19 19 C 1.54993 * 110.90809 * 179.09481 * 17 15 14 20 20 O 1.44384 * 103.49066 * 155.22149 * 19 17 15 21 21 C 1.43741 * 106.97463 * 319.94228 * 20 19 17 22 22 C 1.54097 * 107.29653 * 26.51085 * 21 20 19 23 23 H 1.09001 * 110.60316 * 116.70214 * 22 21 20 24 24 O 1.42901 * 110.49146 * 239.29538 * 22 21 20 25 25 H 1.09002 * 109.46716 * 89.99589 * 1 2 3 26 26 H 1.08994 * 109.46990 * 209.99787 * 1 2 3 27 27 H 1.09000 * 109.47007 * 330.00057 * 1 2 3 28 28 H 1.09000 * 109.47710 * 330.00836 * 3 2 1 29 29 H 1.09000 * 109.47684 * 210.00041 * 3 2 1 30 30 H 0.96996 * 120.00511 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47295 * 300.00081 * 14 12 2 32 32 H 1.09001 * 109.47113 * 60.00409 * 14 12 2 33 33 H 1.08996 * 109.47299 * 65.38320 * 16 15 14 34 34 H 1.08997 * 109.47633 * 185.39142 * 16 15 14 35 35 H 1.09001 * 109.46854 * 305.38907 * 16 15 14 36 36 H 1.08997 * 110.62003 * 273.71940 * 19 17 15 37 37 H 1.08993 * 110.61756 * 36.72609 * 19 17 15 38 38 H 1.09000 * 109.87651 * 267.08562 * 21 20 19 39 39 H 1.09002 * 109.87965 * 145.93470 * 21 20 19 40 40 H 0.96704 * 113.99942 * 294.77338 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0939 1.0982 2.2417 6 6 3.1260 2.8779 1.6729 7 7 3.3406 3.2602 2.9129 8 14 3.7392 3.9256 0.2531 9 1 2.6896 4.9040 -0.1295 10 1 4.9658 4.6526 0.6681 11 1 4.0496 3.0533 -0.9078 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 7 2.3401 -3.5888 -0.0018 16 6 3.1045 -3.6266 -1.2556 17 6 1.6558 -4.8667 0.2363 18 1 0.8583 -5.0201 -0.4907 19 6 2.6617 -6.0457 0.2121 20 8 2.0149 -7.0569 1.0144 21 6 1.4061 -6.3828 2.1284 22 6 1.1068 -4.9385 1.6821 23 1 0.0336 -4.7484 1.6924 24 8 1.7871 -4.0041 2.5224 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6085 2.0285 -0.5137 29 1 3.1500 1.1385 -0.5138 30 1 3.8167 4.0865 3.0902 31 1 0.7591 -2.5302 0.8897 32 1 0.7585 -2.5298 -0.8903 33 1 3.7304 -2.7370 -1.3265 34 1 3.7343 -4.5161 -1.2706 35 1 2.4160 -3.6546 -2.1001 36 1 2.8111 -6.4019 -0.8071 37 1 3.6106 -5.7499 0.6594 38 1 2.0914 -6.3743 2.9760 39 1 0.4788 -6.8852 2.4039 40 1 1.4829 -4.0065 3.4403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708595102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:07 Heat of formation + Delta-G solvation = -94.747327 kcal Electronic energy + Delta-G solvation = -22165.438684 eV Core-core repulsion = 18788.744489 eV Total energy + Delta-G solvation = -3376.694195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.21120 -38.95649 -36.36390 -35.91722 -34.71052 -32.50216 -30.29043 -29.40739 -28.47617 -27.39050 -25.82529 -24.52969 -22.46507 -22.03137 -20.34930 -18.42605 -17.88659 -17.02662 -16.90917 -16.10409 -15.75121 -15.46199 -15.21633 -15.04074 -14.49039 -14.28210 -13.82183 -13.45012 -13.38246 -13.07523 -12.69087 -12.52158 -12.31652 -12.11805 -11.87113 -11.81782 -11.59058 -11.42378 -11.18488 -10.85231 -10.67385 -10.47702 -10.16066 -10.05485 -9.91284 -9.48433 -8.91690 -8.55037 -8.12776 -7.62080 -6.04156 -4.02277 3.29245 3.34841 3.39774 3.42348 3.46068 3.77873 4.04766 4.22206 4.34703 4.43588 4.56648 4.76687 4.98512 5.06946 5.15835 5.29271 5.34487 5.41724 5.45136 5.49123 5.56116 5.59721 5.62780 5.72480 5.76464 5.85901 6.15799 6.29093 6.52151 6.68045 6.96131 7.06454 7.11788 7.41456 7.65681 7.66143 8.32380 8.52647 8.99693 9.10536 9.56438 11.09449 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030223 B = 0.004467 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.235144 B = 6267.349581 C = 6463.382644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.525 4.525 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.264 1.264 12 C 0.512 3.488 13 O -0.521 6.521 14 C 0.046 3.954 15 N -0.492 5.492 16 C 0.014 3.986 17 C 0.054 3.946 18 H 0.065 0.935 19 C 0.056 3.944 20 O -0.376 6.376 21 C 0.018 3.982 22 C 0.074 3.926 23 H 0.068 0.932 24 O -0.525 6.525 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -17.191 -6.009 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.097 3.903 4 C -0.564 4.564 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.298 3.702 13 O -0.396 6.396 14 C -0.085 4.085 15 N -0.217 5.217 16 C -0.133 4.133 17 C -0.055 4.055 18 H 0.082 0.918 19 C -0.021 4.021 20 O -0.294 6.294 21 C -0.060 4.060 22 C 0.014 3.986 23 H 0.086 0.914 24 O -0.329 6.329 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.042 0.958 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.036 0.964 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.371 -17.057 -6.116 19.562 hybrid contribution -0.779 0.650 -0.564 1.161 sum -8.150 -16.407 -6.680 19.499 Atomic orbital electron populations 1.21633 0.81292 1.02861 1.00180 1.47828 1.06054 1.07104 1.72592 1.19631 0.92441 0.79943 0.98327 1.21345 1.36686 1.07042 0.91333 0.90744 1.24859 0.95304 0.97365 0.95519 1.69897 1.41748 1.23438 1.18651 0.86865 0.78893 0.80740 0.83340 1.20190 1.20965 1.18879 1.20073 0.88185 0.84525 0.77382 1.90624 1.13688 1.86687 1.48641 1.21993 0.94093 0.90505 1.01875 1.61475 1.24751 0.99933 1.35543 1.22674 0.98020 1.04543 0.88082 1.23278 0.96239 0.91314 0.94682 0.91779 1.23641 0.96126 0.86255 0.96049 1.88868 1.71728 1.30857 1.37972 1.24005 0.98474 0.92763 0.90715 1.23123 0.95679 0.88581 0.91249 0.91402 1.86897 1.63375 1.59536 1.23047 0.93884 0.92462 0.90565 0.95846 0.94178 0.92632 0.88053 0.93256 0.88529 0.91685 0.96422 0.88863 0.90266 0.91159 0.89541 0.78045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.91 16 2 N -0.60 -12.61 2.86 -182.95 -0.52 -13.13 16 3 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 4 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 5 H 0.07 2.40 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 8 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.51 10.71 7.43 -10.99 -0.08 10.63 16 13 O -0.52 -13.09 13.89 5.56 0.08 -13.01 16 14 C 0.05 0.72 3.66 -4.98 -0.02 0.70 16 15 N -0.49 -7.45 3.75 -233.92 -0.88 -8.33 16 16 C 0.01 0.20 9.03 60.06 0.54 0.75 16 17 C 0.05 0.64 2.76 -65.70 -0.18 0.46 16 18 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 19 C 0.06 0.64 5.80 38.21 0.22 0.86 16 20 O -0.38 -4.46 11.52 -35.23 -0.41 -4.87 16 21 C 0.02 0.17 7.52 37.73 0.28 0.46 16 22 C 0.07 0.78 3.54 -25.20 -0.09 0.70 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 O -0.53 -6.86 11.58 -35.23 -0.41 -7.26 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.80 16 28 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 29 H 0.04 1.08 6.47 -51.93 -0.34 0.74 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.10 1.48 5.90 -51.93 -0.31 1.18 16 32 H 0.05 0.64 8.03 -51.93 -0.42 0.23 16 33 H 0.10 1.69 5.99 -51.93 -0.31 1.37 16 34 H 0.06 0.78 6.48 -51.93 -0.34 0.45 16 35 H 0.02 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.09 0.89 7.84 -51.93 -0.41 0.48 16 37 H 0.08 1.02 8.13 -51.93 -0.42 0.59 16 38 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.37 3.24 9.12 45.56 0.42 3.66 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -36.80 320.34 -5.75 -42.55 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -5.38 Total: 1.27 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 0.83 Total: 8.14 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.63 Total: -48.78 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.74 Total: -25.14 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.80 -5.75 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708595102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.192 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds