Wall clock time and date at job start Mon Mar 30 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46499 * 119.99923 * 2 1 4 4 C 1.50706 * 109.46724 * 90.00204 * 3 2 1 5 5 H 1.07993 * 120.00176 * 359.72000 * 4 3 2 6 6 C 1.37878 * 119.99929 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00369 * 179.72763 * 6 4 3 8 8 Si 1.86806 * 120.00006 * 359.71760 * 6 4 3 9 9 H 1.48503 * 109.46950 * 90.00563 * 8 6 4 10 10 H 1.48498 * 109.47049 * 210.00448 * 8 6 4 11 11 H 1.48499 * 109.47072 * 330.00885 * 8 6 4 12 12 C 1.34777 * 120.00034 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99598 * 179.97438 * 12 2 1 14 14 C 1.50694 * 119.99855 * 359.97438 * 12 2 1 15 15 N 1.46903 * 109.46898 * 179.97438 * 14 12 2 16 16 C 1.46894 * 111.00527 * 293.95736 * 15 14 12 17 17 C 1.46903 * 111.00013 * 170.00065 * 15 14 12 18 18 H 1.09003 * 110.80135 * 55.42831 * 17 15 14 19 19 C 1.54993 * 110.90809 * 179.09481 * 17 15 14 20 20 O 1.44384 * 103.49066 * 155.22149 * 19 17 15 21 21 C 1.43741 * 106.97463 * 319.94228 * 20 19 17 22 22 C 1.54097 * 107.29653 * 26.51085 * 21 20 19 23 23 H 1.09001 * 110.60316 * 116.70214 * 22 21 20 24 24 O 1.42901 * 110.49146 * 239.29538 * 22 21 20 25 25 H 1.09002 * 109.46716 * 89.99589 * 1 2 3 26 26 H 1.08994 * 109.46990 * 209.99787 * 1 2 3 27 27 H 1.09000 * 109.47007 * 330.00057 * 1 2 3 28 28 H 1.09000 * 109.47710 * 330.00836 * 3 2 1 29 29 H 1.09000 * 109.47684 * 210.00041 * 3 2 1 30 30 H 0.96996 * 120.00511 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47295 * 300.00081 * 14 12 2 32 32 H 1.09001 * 109.47113 * 60.00409 * 14 12 2 33 33 H 1.08996 * 109.47299 * 65.38320 * 16 15 14 34 34 H 1.08997 * 109.47633 * 185.39142 * 16 15 14 35 35 H 1.09001 * 109.46854 * 305.38907 * 16 15 14 36 36 H 1.08997 * 110.62003 * 273.71940 * 19 17 15 37 37 H 1.08993 * 110.61756 * 36.72609 * 19 17 15 38 38 H 1.09000 * 109.87651 * 267.08562 * 21 20 19 39 39 H 1.09002 * 109.87965 * 145.93470 * 21 20 19 40 40 H 0.96704 * 113.99942 * 294.77338 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 1.4209 5 1 2.0939 1.0982 2.2417 6 6 3.1260 2.8779 1.6729 7 7 3.3406 3.2602 2.9129 8 14 3.7392 3.9256 0.2531 9 1 2.6896 4.9040 -0.1295 10 1 4.9658 4.6526 0.6681 11 1 4.0496 3.0533 -0.9078 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1671 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 7 2.3401 -3.5888 -0.0018 16 6 3.1045 -3.6266 -1.2556 17 6 1.6558 -4.8667 0.2363 18 1 0.8583 -5.0201 -0.4907 19 6 2.6617 -6.0457 0.2121 20 8 2.0149 -7.0569 1.0144 21 6 1.4061 -6.3828 2.1284 22 6 1.1068 -4.9385 1.6821 23 1 0.0336 -4.7484 1.6924 24 8 1.7871 -4.0041 2.5224 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6085 2.0285 -0.5137 29 1 3.1500 1.1385 -0.5138 30 1 3.8167 4.0865 3.0902 31 1 0.7591 -2.5302 0.8897 32 1 0.7585 -2.5298 -0.8903 33 1 3.7304 -2.7370 -1.3265 34 1 3.7343 -4.5161 -1.2706 35 1 2.4160 -3.6546 -2.1001 36 1 2.8111 -6.4019 -0.8071 37 1 3.6106 -5.7499 0.6594 38 1 2.0914 -6.3743 2.9760 39 1 0.4788 -6.8852 2.4039 40 1 1.4829 -4.0065 3.4403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708595102.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:07 Heat of formation + Delta-G solvation = -126.771387 kcal Electronic energy + Delta-G solvation = -22166.827352 eV Core-core repulsion = 18788.744489 eV Total energy + Delta-G solvation = -3378.082862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22547 -40.36760 -37.46859 -36.91373 -36.36235 -34.67820 -31.50709 -30.68292 -29.71524 -28.58544 -27.26718 -25.85074 -23.87173 -23.28464 -21.31934 -19.95765 -19.12863 -18.79814 -18.17627 -17.24693 -17.12339 -16.74582 -16.39144 -16.18112 -15.93751 -15.60526 -15.11589 -14.89207 -14.41847 -14.36510 -14.10416 -13.80835 -13.70191 -13.61264 -13.26167 -13.16951 -12.83535 -12.72611 -12.53152 -12.36968 -12.26345 -11.97901 -11.73965 -11.50676 -11.00840 -10.80733 -10.75674 -10.51022 -9.36521 -9.15725 -8.32494 -6.37180 1.31827 1.37082 1.47862 1.87597 2.20239 2.32518 2.70952 3.01604 3.11316 3.29625 3.55390 3.74077 3.78249 3.99931 4.17431 4.25545 4.26434 4.39304 4.45604 4.52434 4.60848 4.66931 4.70242 4.74580 4.80562 4.82536 4.86258 4.96812 4.99077 5.14532 5.48135 5.64676 5.70324 5.95013 6.12121 6.27435 6.64212 6.77324 6.95221 7.24112 7.53023 8.84829 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.030223 B = 0.004467 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.235144 B = 6267.349581 C = 6463.382644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.226 3.774 4 C -0.534 4.534 5 H 0.026 0.974 6 C 0.010 3.990 7 N -0.947 5.947 8 Si 0.950 3.050 9 H -0.249 1.249 10 H -0.283 1.283 11 H -0.257 1.257 12 C 0.499 3.501 13 O -0.576 6.576 14 C 0.063 3.937 15 N -0.521 5.521 16 C 0.019 3.981 17 C 0.053 3.947 18 H 0.090 0.910 19 C 0.058 3.942 20 O -0.389 6.389 21 C 0.018 3.982 22 C 0.072 3.928 23 H 0.097 0.903 24 O -0.559 6.559 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.268 0.732 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 -18.079 -8.002 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.345 5.345 3 C 0.103 3.897 4 C -0.573 4.573 5 H 0.044 0.956 6 C -0.188 4.188 7 N -0.587 5.587 8 Si 0.772 3.228 9 H -0.173 1.173 10 H -0.208 1.208 11 H -0.181 1.181 12 C 0.288 3.712 13 O -0.456 6.456 14 C -0.068 4.068 15 N -0.247 5.247 16 C -0.128 4.128 17 C -0.056 4.056 18 H 0.108 0.892 19 C -0.019 4.019 20 O -0.307 6.307 21 C -0.059 4.059 22 C 0.012 3.988 23 H 0.114 0.886 24 O -0.366 6.366 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -9.595 -17.973 -8.103 21.926 hybrid contribution -0.126 0.844 0.169 0.870 sum -9.721 -17.128 -7.934 21.232 Atomic orbital electron populations 1.21951 0.77759 1.03867 1.02835 1.47967 1.08359 1.05877 1.72273 1.19283 0.92649 0.82596 0.95177 1.21571 1.36616 1.06633 0.92448 0.95557 1.25872 0.95325 0.98967 0.98641 1.70057 1.42972 1.24385 1.21325 0.85686 0.78806 0.78941 0.79348 1.17342 1.20821 1.18109 1.21170 0.87993 0.86203 0.75838 1.90599 1.16341 1.87650 1.50969 1.21865 0.93552 0.87481 1.03897 1.61324 1.25783 1.01274 1.36294 1.22545 0.98241 1.03261 0.88778 1.23418 0.96663 0.89418 0.96115 0.89233 1.23611 0.95113 0.86392 0.96777 1.88857 1.71868 1.31397 1.38611 1.24119 0.99394 0.92540 0.89874 1.23315 0.96832 0.88444 0.90166 0.88575 1.86847 1.64641 1.60548 1.24548 0.90200 0.89563 0.91603 0.93372 0.96450 0.92320 0.86940 0.89663 0.92560 0.90203 0.94155 0.86970 0.92687 0.91800 0.86775 0.76350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.18 10.24 127.77 1.31 3.49 16 2 N -0.61 -25.19 2.86 -851.12 -2.43 -27.62 16 3 C 0.23 11.23 4.23 85.64 0.36 11.59 16 4 C -0.53 -32.22 9.94 25.60 0.25 -31.96 16 5 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 6 C 0.01 0.58 5.47 84.65 0.46 1.04 16 7 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 8 Si 0.95 45.22 27.47 68.60 1.88 47.10 16 9 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 11 H -0.26 -11.85 6.54 99.48 0.65 -11.20 16 12 C 0.50 20.79 7.43 87.66 0.65 21.45 16 13 O -0.58 -30.01 13.89 -3.03 -0.04 -30.05 16 14 C 0.06 1.79 3.66 85.55 0.31 2.11 16 15 N -0.52 -15.02 3.75 -893.99 -3.35 -18.37 16 16 C 0.02 0.53 9.03 127.69 1.15 1.68 16 17 C 0.05 1.10 2.76 46.22 0.13 1.23 16 18 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 19 C 0.06 1.22 5.80 72.66 0.42 1.64 16 20 O -0.39 -8.43 11.52 -148.98 -1.72 -10.15 16 21 C 0.02 0.30 7.52 72.35 0.54 0.85 16 22 C 0.07 1.34 3.54 31.58 0.11 1.45 16 23 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 24 O -0.56 -14.14 11.58 -148.98 -1.72 -15.86 16 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 1.90 6.44 -2.39 -0.02 1.89 16 27 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 28 H 0.05 2.16 7.51 -2.39 -0.02 2.14 16 29 H 0.02 0.95 6.47 -2.39 -0.02 0.93 16 30 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 31 H 0.11 2.97 5.90 -2.39 -0.01 2.96 16 32 H 0.09 1.84 8.03 -2.39 -0.02 1.82 16 33 H 0.06 2.02 5.99 -2.39 -0.01 2.00 16 34 H 0.08 1.86 6.48 -2.39 -0.02 1.84 16 35 H 0.04 0.89 8.07 -2.39 -0.02 0.87 16 36 H 0.11 1.87 7.84 -2.39 -0.02 1.85 16 37 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 38 H 0.06 1.16 7.97 -2.39 -0.02 1.14 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.39 6.52 9.12 -74.05 -0.68 5.84 16 Total: -1.00 -84.65 320.34 -1.06 -85.71 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.31 Total: 15.36 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 5.71 Total: 14.57 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -5.48 Total: -106.68 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -3.48 Total: -56.06 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.10 kcal Total: -84.65 -1.06 -85.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708595102.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.060 kcal (2) G-P(sol) polarization free energy of solvation -84.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds