Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00015 * 2 1 4 4 C 1.50705 * 109.47031 * 270.00505 * 3 2 1 5 5 H 1.08004 * 119.99938 * 359.71702 * 4 3 2 6 6 C 1.37876 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99600 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00304 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47108 * 89.99749 * 8 6 4 10 10 H 1.48499 * 109.47024 * 209.99772 * 8 6 4 11 11 H 1.48504 * 109.46886 * 329.99968 * 8 6 4 12 12 C 1.34770 * 120.00232 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00438 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00038 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.47233 * 179.97438 * 14 12 2 16 16 C 1.46897 * 110.99977 * 66.04626 * 15 14 12 17 17 C 1.46902 * 110.99619 * 189.99899 * 15 14 12 18 18 H 1.08996 * 110.80491 * 305.30448 * 17 15 14 19 19 C 1.55003 * 110.90393 * 181.68164 * 17 15 14 20 20 O 1.44377 * 103.48727 * 204.78000 * 19 17 15 21 21 C 1.43738 * 106.98078 * 40.05706 * 20 19 17 22 22 C 1.54102 * 107.29220 * 333.48750 * 21 20 19 23 23 H 1.09004 * 110.48905 * 243.34747 * 22 21 20 24 24 O 1.42904 * 110.48836 * 120.70338 * 22 21 20 25 25 H 1.09002 * 109.47670 * 89.99879 * 1 2 3 26 26 H 1.09004 * 109.47234 * 210.00206 * 1 2 3 27 27 H 1.09008 * 109.46962 * 329.99878 * 1 2 3 28 28 H 1.08993 * 109.47499 * 150.00256 * 3 2 1 29 29 H 1.09004 * 109.47111 * 29.99965 * 3 2 1 30 30 H 0.97001 * 119.99429 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46551 * 299.99906 * 14 12 2 32 32 H 1.09003 * 109.47195 * 59.99819 * 14 12 2 33 33 H 1.09004 * 109.47569 * 55.43539 * 16 15 14 34 34 H 1.08995 * 109.47162 * 175.43684 * 16 15 14 35 35 H 1.09008 * 109.46965 * 295.43880 * 16 15 14 36 36 H 1.09000 * 110.61417 * 323.27444 * 19 17 15 37 37 H 1.08997 * 110.61943 * 86.27164 * 19 17 15 38 38 H 1.09004 * 109.87793 * 92.91092 * 21 20 19 39 39 H 1.09000 * 109.88130 * 213.91485 * 21 20 19 40 40 H 0.96706 * 113.99968 * 65.23367 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4209 5 1 2.1015 1.0938 -2.2418 6 6 3.1268 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6732 8 14 3.4386 3.4165 -3.4340 9 1 2.3089 4.2597 -3.9010 10 1 4.6992 4.1990 -3.4964 11 1 3.5555 2.2192 -4.3047 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 7 2.3400 -3.5888 -0.0027 16 6 3.1053 -3.6282 1.2506 17 6 1.6555 -4.8664 -0.2420 18 1 0.8502 -5.0148 0.4774 19 6 2.6585 -6.0474 -0.2008 20 8 2.0183 -7.0611 -1.0051 21 6 1.4232 -6.3913 -2.1291 22 6 1.1223 -4.9442 -1.6932 23 1 0.0492 -4.7542 -1.7161 24 8 1.8139 -4.0155 -2.5306 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.1499 1.1385 0.5137 29 1 1.6084 2.0284 0.5138 30 1 4.0310 4.4435 -0.8505 31 1 0.7584 -2.5306 0.8881 32 1 0.7590 -2.5295 -0.8920 33 1 2.4176 -3.6722 2.0951 34 1 3.7460 -4.5100 1.2575 35 1 3.7203 -2.7316 1.3291 36 1 3.6130 -5.7558 -0.6391 37 1 2.7960 -6.3988 0.8218 38 1 2.1178 -6.3885 -2.9692 39 1 0.4993 -6.8947 -2.4140 40 1 1.5197 -4.0217 -3.4518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708595106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = -99.354167 kcal Electronic energy + Delta-G solvation = -22138.266635 eV Core-core repulsion = 18761.372673 eV Total energy + Delta-G solvation = -3376.893962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19419 -38.86137 -36.32748 -35.90414 -34.59949 -32.56379 -30.23058 -29.26620 -28.15694 -27.19285 -25.68545 -24.51013 -22.49862 -22.32396 -20.35758 -18.38772 -17.87854 -16.98989 -16.48523 -16.06918 -15.68961 -15.45450 -15.18199 -14.91155 -14.57499 -14.16096 -13.94052 -13.38114 -13.29711 -13.09773 -12.67787 -12.36480 -12.12583 -12.03096 -11.84328 -11.79363 -11.35698 -11.26528 -11.06336 -10.82736 -10.66095 -10.51611 -10.16857 -10.09309 -9.91424 -9.55808 -8.82212 -8.38536 -8.07158 -7.55417 -5.99294 -4.03201 3.33514 3.39299 3.40545 3.45781 3.55294 3.82304 4.06477 4.27802 4.34818 4.50589 4.56941 4.77613 4.99250 5.10118 5.20366 5.31814 5.35942 5.42032 5.48715 5.54792 5.55971 5.65443 5.68206 5.72212 5.77577 5.99275 6.19618 6.34067 6.52656 6.95826 7.12894 7.18446 7.49370 7.62145 7.64204 7.97935 8.29565 8.49737 8.97343 9.22040 9.61775 11.08865 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.004577 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.303281 B = 6116.260625 C = 6496.908393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.607 5.607 3 C 0.247 3.753 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.510 3.490 13 O -0.522 6.522 14 C 0.045 3.955 15 N -0.492 5.492 16 C 0.014 3.986 17 C 0.054 3.946 18 H 0.064 0.936 19 C 0.056 3.944 20 O -0.376 6.376 21 C 0.018 3.982 22 C 0.075 3.925 23 H 0.068 0.932 24 O -0.525 6.525 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -17.802 0.855 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.341 5.341 3 C 0.128 3.872 4 C -0.561 4.561 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.295 3.705 13 O -0.398 6.398 14 C -0.086 4.086 15 N -0.217 5.217 16 C -0.133 4.133 17 C -0.055 4.055 18 H 0.082 0.918 19 C -0.021 4.021 20 O -0.294 6.294 21 C -0.060 4.060 22 C 0.014 3.986 23 H 0.086 0.914 24 O -0.328 6.328 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.732 -17.638 1.120 19.290 hybrid contribution -0.929 0.379 -0.957 1.386 sum -8.660 -17.258 0.163 19.310 Atomic orbital electron populations 1.21590 0.81767 1.01347 1.01025 1.48143 1.05960 1.07822 1.72146 1.19270 0.92491 0.77972 0.97471 1.21447 1.36240 1.06012 0.92386 0.92482 1.24933 0.95382 0.96468 0.97383 1.69938 1.38641 1.14371 1.30694 0.86498 0.77595 0.78549 0.84797 1.20732 1.21126 1.19859 1.20036 0.88203 0.84523 0.77692 1.90626 1.13660 1.86696 1.48810 1.22023 0.94112 0.90752 1.01700 1.61492 1.24686 0.99901 1.35608 1.22679 0.97956 1.04635 0.88058 1.23275 0.96287 0.91395 0.94573 0.91790 1.23650 0.96216 0.86194 0.96033 1.88865 1.72479 1.30941 1.37146 1.24004 0.98614 0.92833 0.90518 1.23114 0.95579 0.88554 0.91320 0.91410 1.86901 1.63309 1.59939 1.22652 0.93312 0.93035 0.91439 0.93932 0.95158 0.92804 0.93309 0.88327 0.96435 0.91726 0.88422 0.90290 0.88830 0.91245 0.89561 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 10.28 59.84 0.62 2.01 16 2 N -0.61 -13.14 2.86 -182.95 -0.52 -13.66 16 3 C 0.25 6.59 5.20 -5.19 -0.03 6.56 16 4 C -0.52 -15.14 9.39 -34.44 -0.32 -15.46 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.28 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.51 10.91 7.43 -10.99 -0.08 10.83 16 13 O -0.52 -13.44 13.89 5.55 0.08 -13.36 16 14 C 0.05 0.71 3.67 -4.97 -0.02 0.70 16 15 N -0.49 -7.56 3.74 -233.91 -0.87 -8.44 16 16 C 0.01 0.21 9.01 60.06 0.54 0.75 16 17 C 0.05 0.65 2.76 -65.70 -0.18 0.47 16 18 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 19 C 0.06 0.64 5.77 38.22 0.22 0.86 16 20 O -0.38 -4.47 11.52 -35.23 -0.41 -4.88 16 21 C 0.02 0.17 7.52 37.73 0.28 0.45 16 22 C 0.07 0.79 3.55 -25.20 -0.09 0.70 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 O -0.52 -6.76 11.64 -35.23 -0.41 -7.17 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 27 H 0.07 1.03 7.89 -51.92 -0.41 0.62 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.03 0.81 7.89 -51.93 -0.41 0.40 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.05 0.66 7.34 -51.93 -0.38 0.28 16 32 H 0.10 1.46 6.67 -51.93 -0.35 1.12 16 33 H 0.02 0.22 8.09 -51.93 -0.42 -0.20 16 34 H 0.06 0.80 6.48 -51.93 -0.34 0.46 16 35 H 0.10 1.76 5.97 -51.92 -0.31 1.45 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.09 0.90 7.86 -51.93 -0.41 0.49 16 38 H 0.07 0.66 7.97 -51.93 -0.41 0.24 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.37 3.11 9.12 45.56 0.42 3.52 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -35.93 323.78 -6.10 -42.02 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.40 Total: 0.17 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 0.84 Total: 9.51 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.66 Total: -48.43 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.74 Total: -25.41 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.93 -6.10 -42.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708595106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.333 kcal (2) G-P(sol) polarization free energy of solvation -35.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds