Wall clock time and date at job start Mon Mar 30 2020 05:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00015 * 2 1 4 4 C 1.50705 * 109.47031 * 270.00505 * 3 2 1 5 5 H 1.08004 * 119.99938 * 359.71702 * 4 3 2 6 6 C 1.37876 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99600 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00304 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47108 * 89.99749 * 8 6 4 10 10 H 1.48499 * 109.47024 * 209.99772 * 8 6 4 11 11 H 1.48504 * 109.46886 * 329.99968 * 8 6 4 12 12 C 1.34770 * 120.00232 * 180.02562 * 2 1 3 13 13 O 1.21286 * 120.00438 * 179.97438 * 12 2 1 14 14 C 1.50703 * 120.00038 * 0.02562 * 12 2 1 15 15 N 1.46901 * 109.47233 * 179.97438 * 14 12 2 16 16 C 1.46897 * 110.99977 * 66.04626 * 15 14 12 17 17 C 1.46902 * 110.99619 * 189.99899 * 15 14 12 18 18 H 1.08996 * 110.80491 * 305.30448 * 17 15 14 19 19 C 1.55003 * 110.90393 * 181.68164 * 17 15 14 20 20 O 1.44377 * 103.48727 * 204.78000 * 19 17 15 21 21 C 1.43738 * 106.98078 * 40.05706 * 20 19 17 22 22 C 1.54102 * 107.29220 * 333.48750 * 21 20 19 23 23 H 1.09004 * 110.48905 * 243.34747 * 22 21 20 24 24 O 1.42904 * 110.48836 * 120.70338 * 22 21 20 25 25 H 1.09002 * 109.47670 * 89.99879 * 1 2 3 26 26 H 1.09004 * 109.47234 * 210.00206 * 1 2 3 27 27 H 1.09008 * 109.46962 * 329.99878 * 1 2 3 28 28 H 1.08993 * 109.47499 * 150.00256 * 3 2 1 29 29 H 1.09004 * 109.47111 * 29.99965 * 3 2 1 30 30 H 0.97001 * 119.99429 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46551 * 299.99906 * 14 12 2 32 32 H 1.09003 * 109.47195 * 59.99819 * 14 12 2 33 33 H 1.09004 * 109.47569 * 55.43539 * 16 15 14 34 34 H 1.08995 * 109.47162 * 175.43684 * 16 15 14 35 35 H 1.09008 * 109.46965 * 295.43880 * 16 15 14 36 36 H 1.09000 * 110.61417 * 323.27444 * 19 17 15 37 37 H 1.08997 * 110.61943 * 86.27164 * 19 17 15 38 38 H 1.09004 * 109.87793 * 92.91092 * 21 20 19 39 39 H 1.09000 * 109.88130 * 213.91485 * 21 20 19 40 40 H 0.96706 * 113.99968 * 65.23367 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4485 1.7039 -1.4209 5 1 2.1015 1.0938 -2.2418 6 6 3.1268 2.8775 -1.6729 7 7 3.5541 3.6176 -0.6732 8 14 3.4386 3.4165 -3.4340 9 1 2.3089 4.2597 -3.9010 10 1 4.6992 4.1990 -3.4964 11 1 3.5555 2.2192 -4.3047 12 6 2.1389 -1.1671 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 7 2.3400 -3.5888 -0.0027 16 6 3.1053 -3.6282 1.2506 17 6 1.6555 -4.8664 -0.2420 18 1 0.8502 -5.0148 0.4774 19 6 2.6585 -6.0474 -0.2008 20 8 2.0183 -7.0611 -1.0051 21 6 1.4232 -6.3913 -2.1291 22 6 1.1223 -4.9442 -1.6932 23 1 0.0492 -4.7542 -1.7161 24 8 1.8139 -4.0155 -2.5306 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.1499 1.1385 0.5137 29 1 1.6084 2.0284 0.5138 30 1 4.0310 4.4435 -0.8505 31 1 0.7584 -2.5306 0.8881 32 1 0.7590 -2.5295 -0.8920 33 1 2.4176 -3.6722 2.0951 34 1 3.7460 -4.5100 1.2575 35 1 3.7203 -2.7316 1.3291 36 1 3.6130 -5.7558 -0.6391 37 1 2.7960 -6.3988 0.8218 38 1 2.1178 -6.3885 -2.9692 39 1 0.4993 -6.8947 -2.4140 40 1 1.5197 -4.0217 -3.4518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708595106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:09 Heat of formation + Delta-G solvation = -129.743123 kcal Electronic energy + Delta-G solvation = -22139.584399 eV Core-core repulsion = 18761.372673 eV Total energy + Delta-G solvation = -3378.211726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20421 -40.32940 -37.44340 -36.89461 -36.32898 -34.70665 -31.32817 -30.45889 -29.51319 -28.52896 -27.21402 -25.94165 -24.19328 -23.27428 -21.32325 -19.95749 -18.79372 -18.67647 -18.13166 -17.24275 -17.10205 -16.70726 -16.40584 -16.15813 -16.03197 -15.50239 -15.22694 -14.68044 -14.37958 -14.34604 -13.97253 -13.77413 -13.65448 -13.42148 -13.20030 -13.12455 -12.78162 -12.71685 -12.53114 -12.50401 -12.29037 -12.14835 -11.68523 -11.50007 -10.99387 -10.74443 -10.62584 -10.46230 -9.37612 -9.16709 -8.20903 -6.35357 1.36132 1.39912 1.50263 1.91654 2.22898 2.40668 2.73721 3.08246 3.12852 3.30634 3.56268 3.74456 3.80534 4.01840 4.15168 4.22305 4.31059 4.42098 4.47494 4.52471 4.59559 4.70449 4.74609 4.76227 4.82426 4.86723 4.93892 5.03556 5.14578 5.23719 5.59015 5.69738 5.86361 5.96538 6.08893 6.13118 6.72732 6.85672 6.97757 7.31194 7.59038 8.85978 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.004577 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.303281 B = 6116.260625 C = 6496.908393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.615 5.615 3 C 0.261 3.739 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.968 3.032 9 H -0.261 1.261 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.498 3.502 13 O -0.579 6.579 14 C 0.063 3.937 15 N -0.519 5.519 16 C 0.019 3.981 17 C 0.052 3.948 18 H 0.089 0.911 19 C 0.058 3.942 20 O -0.389 6.389 21 C 0.017 3.983 22 C 0.074 3.926 23 H 0.097 0.903 24 O -0.558 6.558 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.070 0.930 28 H -0.005 1.005 29 H 0.024 0.976 30 H 0.267 0.733 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 -19.288 -0.016 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.348 5.348 3 C 0.140 3.860 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.286 3.714 13 O -0.458 6.458 14 C -0.067 4.067 15 N -0.244 5.244 16 C -0.128 4.128 17 C -0.057 4.057 18 H 0.106 0.894 19 C -0.019 4.019 20 O -0.308 6.308 21 C -0.060 4.060 22 C 0.014 3.986 23 H 0.115 0.885 24 O -0.364 6.364 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.089 0.911 28 H 0.013 0.987 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.132 0.868 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -10.226 -19.148 0.241 21.708 hybrid contribution -0.161 0.805 -0.665 1.057 sum -10.387 -18.342 -0.423 21.083 Atomic orbital electron populations 1.21895 0.78023 1.03815 1.02338 1.48179 1.08313 1.06312 1.71968 1.18731 0.91043 0.80378 0.95895 1.21699 1.36717 1.06306 0.93104 0.93164 1.25857 0.94878 0.96478 1.01972 1.70055 1.39101 1.14824 1.32999 0.85416 0.78117 0.78130 0.79144 1.18600 1.20639 1.19970 1.21167 0.87988 0.86174 0.76052 1.90603 1.16445 1.87678 1.51106 1.21876 0.93520 0.87484 1.03869 1.61340 1.25667 1.01308 1.36129 1.22539 0.98226 1.03187 0.88887 1.23424 0.96701 0.89380 0.96206 0.89351 1.23611 0.95227 0.86326 0.96742 1.88855 1.72617 1.31458 1.37840 1.24131 0.99576 0.92590 0.89663 1.23283 0.96740 0.88486 0.90076 0.88534 1.86849 1.64529 1.60829 1.24241 0.92468 0.88528 0.91089 0.98670 0.95836 0.92445 0.89935 0.86685 0.94294 0.90139 0.92779 0.92615 0.87104 0.91731 0.86782 0.76331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.42 10.28 127.77 1.31 3.73 16 2 N -0.61 -26.70 2.86 -851.11 -2.43 -29.13 16 3 C 0.26 14.48 5.20 85.63 0.45 14.92 16 4 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 6 C 0.01 0.40 5.46 84.65 0.46 0.86 16 7 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 8 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 12 C 0.50 21.43 7.43 87.66 0.65 22.08 16 13 O -0.58 -31.23 13.89 -3.05 -0.04 -31.27 16 14 C 0.06 1.84 3.67 85.56 0.31 2.16 16 15 N -0.52 -15.16 3.74 -893.94 -3.34 -18.50 16 16 C 0.02 0.55 9.01 127.69 1.15 1.70 16 17 C 0.05 1.08 2.76 46.22 0.13 1.21 16 18 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.06 1.22 5.77 72.67 0.42 1.64 16 20 O -0.39 -8.35 11.52 -148.98 -1.72 -10.07 16 21 C 0.02 0.29 7.52 72.35 0.54 0.83 16 22 C 0.07 1.33 3.55 31.58 0.11 1.44 16 23 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 24 O -0.56 -13.40 11.64 -148.98 -1.73 -15.14 16 25 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.10 1.99 6.44 -2.39 -0.02 1.97 16 27 H 0.07 2.05 7.89 -2.38 -0.02 2.03 16 28 H 0.00 -0.31 7.42 -2.39 -0.02 -0.33 16 29 H 0.02 1.31 7.89 -2.38 -0.02 1.29 16 30 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 31 H 0.08 1.87 7.34 -2.38 -0.02 1.85 16 32 H 0.12 3.01 6.67 -2.39 -0.02 2.99 16 33 H 0.04 0.91 8.09 -2.38 -0.02 0.89 16 34 H 0.08 1.95 6.48 -2.39 -0.02 1.94 16 35 H 0.05 2.04 5.97 -2.38 -0.01 2.02 16 36 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.11 1.89 7.86 -2.39 -0.02 1.87 16 38 H 0.06 1.11 7.97 -2.38 -0.02 1.09 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.39 5.84 9.12 -74.05 -0.68 5.17 16 Total: -1.00 -81.86 323.78 -0.81 -82.67 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.36 Total: 11.74 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 5.78 Total: 18.78 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -5.49 Total: -104.71 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -3.49 Total: -56.48 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -81.86 -0.81 -82.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708595106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.072 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds