Wall clock time and date at job start Mon Mar 30 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99543 * 2 1 4 4 C 1.52997 * 109.46824 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47409 * 64.85748 * 4 3 2 6 6 C 1.46503 * 119.99720 * 264.92638 * 5 4 3 7 7 C 1.50697 * 109.47127 * 269.99566 * 6 5 4 8 8 H 1.08002 * 120.00259 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99928 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00068 * 180.02562 * 9 7 6 12 12 H 1.48510 * 109.47027 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47138 * 119.99715 * 11 9 7 14 14 H 1.48495 * 109.47290 * 239.99976 * 11 9 7 15 15 C 1.34771 * 120.00190 * 84.91985 * 5 4 3 16 16 O 1.21276 * 119.99860 * 5.39782 * 15 5 4 17 17 C 1.50703 * 119.99972 * 185.39177 * 15 5 4 18 18 H 1.09001 * 109.46950 * 40.24687 * 17 15 5 19 19 O 1.42901 * 109.46984 * 160.24887 * 17 15 5 20 20 N 1.46302 * 113.99988 * 205.00580 * 19 17 15 21 21 C 1.52999 * 109.47223 * 280.24642 * 17 15 5 22 22 C 1.53004 * 117.51567 * 111.28688 * 21 17 15 23 23 C 1.53006 * 117.49497 * 179.91419 * 21 17 15 24 24 H 1.08995 * 109.47307 * 299.99733 * 1 2 3 25 25 H 1.08994 * 109.47427 * 60.00205 * 1 2 3 26 26 H 1.08998 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47048 * 60.00319 * 3 2 1 28 28 H 1.08997 * 109.47140 * 299.99570 * 3 2 1 29 29 H 1.09000 * 109.47387 * 304.85644 * 4 3 2 30 30 H 1.08998 * 109.47136 * 184.85646 * 4 3 2 31 31 H 1.09003 * 109.47643 * 29.99823 * 6 5 4 32 32 H 1.09002 * 109.47299 * 149.99547 * 6 5 4 33 33 H 0.97001 * 120.00127 * 180.02562 * 10 9 7 34 34 H 1.00897 * 111.00236 * 56.03907 * 20 19 17 35 35 H 1.00894 * 111.00012 * 180.02562 * 20 19 17 36 36 H 1.08999 * 115.55014 * 325.58396 * 21 17 15 37 37 H 1.08996 * 117.49560 * 214.97156 * 22 21 17 38 38 H 1.08997 * 117.50005 * 359.97438 * 22 21 17 39 39 H 1.08997 * 117.50536 * 359.97374 * 23 21 17 40 40 H 1.09004 * 117.49410 * 145.00262 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9754 0.5614 -1.2513 6 6 4.2121 -0.8833 -1.3059 7 6 5.6483 -1.1709 -0.9516 8 1 6.3180 -0.3586 -0.7102 9 6 6.1077 -2.4708 -0.9365 10 7 5.2927 -3.4597 -1.2319 11 14 7.8879 -2.8272 -0.4965 12 1 8.5914 -1.5516 -0.2078 13 1 7.9358 -3.7019 0.7026 14 1 8.5517 -3.5114 -1.6351 15 6 4.1624 1.3170 -2.3515 16 8 4.0619 2.5236 -2.2827 17 6 4.4966 0.6625 -3.6672 18 1 3.9048 -0.2457 -3.7819 19 8 4.1993 1.5630 -4.7362 20 7 3.9251 0.9020 -6.0122 21 6 5.9848 0.3087 -3.6974 22 6 6.3596 -1.1744 -3.6663 23 6 6.5239 -0.3707 -4.9579 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8516 0.5704 0.8424 30 1 3.9784 2.1768 0.0864 31 1 3.5551 -1.3863 -0.5964 32 1 4.0063 -1.2474 -2.3125 33 1 5.6158 -4.3743 -1.2209 34 1 3.1742 0.2345 -5.9197 35 1 3.7218 1.5778 -6.7333 36 1 6.6442 1.0055 -3.1799 37 1 7.2656 -1.4533 -3.1284 38 1 5.5458 -1.8983 -3.6239 39 1 5.8184 -0.5660 -5.7654 40 1 7.5381 -0.1209 -5.2696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708771913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:30 Heat of formation + Delta-G solvation = -41.912731 kcal Electronic energy + Delta-G solvation = -22816.220287 eV Core-core repulsion = 19441.817172 eV Total energy + Delta-G solvation = -3374.403115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.53143 -37.64337 -36.79655 -35.38265 -34.57211 -32.59146 -30.48213 -29.53243 -27.14951 -26.69545 -25.62692 -22.93367 -22.53947 -21.28656 -20.37623 -18.54164 -17.19301 -16.55469 -16.19727 -16.05125 -15.73493 -15.33486 -15.06414 -14.60919 -14.53886 -14.24452 -14.03513 -13.39865 -13.13585 -12.43703 -12.28734 -12.01062 -11.74034 -11.63234 -11.49701 -11.38369 -10.96801 -10.92243 -10.68475 -10.52865 -10.17139 -10.01935 -9.64358 -9.56879 -9.41658 -9.40170 -8.99859 -8.53582 -8.34419 -7.71109 -6.10743 -4.12353 2.87484 3.23598 3.29781 3.33932 3.39267 4.05038 4.14157 4.38996 4.73593 5.21486 5.29305 5.34719 5.44443 5.48713 5.52568 5.59816 5.62129 5.65257 5.69775 5.80724 5.93965 6.04152 6.08984 6.31685 6.34390 6.46823 6.80712 6.86028 7.00492 7.07763 7.14589 7.27984 7.38069 7.43784 7.61374 7.85504 8.14738 8.32770 8.84570 9.00457 9.50388 10.96314 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.009497 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.219787 B = 2947.519381 C = 4494.253766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.581 5.581 6 C 0.239 3.761 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.072 3.928 10 N -0.889 5.889 11 Si 0.881 3.119 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.281 1.281 15 C 0.524 3.476 16 O -0.564 6.564 17 C 0.114 3.886 18 H 0.088 0.912 19 O -0.212 6.212 20 N -0.673 5.673 21 C -0.154 4.154 22 C -0.114 4.114 23 C -0.187 4.187 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.334 0.666 35 H 0.360 0.640 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 4.259 -3.117 8.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.295 6.295 3 C -0.031 4.031 4 C 0.000 4.000 5 N -0.313 5.313 6 C 0.119 3.881 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.130 4.130 10 N -0.528 5.528 11 Si 0.709 3.291 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.207 1.207 15 C 0.310 3.690 16 O -0.444 6.444 17 C 0.053 3.947 18 H 0.105 0.895 19 O -0.226 6.226 20 N -0.239 5.239 21 C -0.173 4.173 22 C -0.151 4.151 23 C -0.224 4.224 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.321 4.441 -3.032 7.565 hybrid contribution -0.218 0.081 0.368 0.436 sum -5.538 4.522 -2.663 7.630 Atomic orbital electron populations 1.22680 0.82159 1.02378 0.99201 1.88044 1.18662 1.27526 1.95219 1.23040 0.95350 0.84855 0.99829 1.21331 0.90874 0.99702 0.88088 1.48045 1.63898 1.11180 1.08139 1.19572 0.96916 0.72955 0.98609 1.21413 0.95285 0.92408 1.46732 0.92265 1.24782 0.97148 0.95981 0.95123 1.69920 1.34818 0.99447 1.48633 0.86724 0.85622 0.78502 0.78276 1.19715 1.21123 1.20695 1.20035 0.76732 0.86716 0.85513 1.90599 1.53262 1.14445 1.86126 1.21352 0.95779 0.92647 0.84939 0.89460 1.90774 1.91103 1.26147 1.14565 1.64401 1.48485 1.16263 0.94724 1.22090 0.94072 0.98064 1.03080 1.22850 1.03438 0.92357 0.96476 1.23084 1.01099 1.05661 0.92524 0.94657 0.94714 0.89852 0.93077 0.93451 0.89083 0.89578 0.93576 0.94849 0.92757 0.85535 0.82672 0.88722 0.89499 0.87830 0.88108 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.57 10.08 -35.23 -0.36 -6.93 16 3 C 0.05 0.77 6.25 37.16 0.23 1.00 16 4 C 0.12 2.29 5.79 -4.04 -0.02 2.27 16 5 N -0.58 -12.33 2.41 -175.06 -0.42 -12.75 16 6 C 0.24 5.54 4.58 -5.19 -0.02 5.52 16 7 C -0.52 -12.81 6.31 -34.44 -0.22 -13.03 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.81 4.11 -17.82 -0.07 1.73 16 10 N -0.89 -23.30 13.29 55.43 0.74 -22.56 16 11 Si 0.88 20.09 28.45 -169.99 -4.84 15.25 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.52 11.48 6.88 -10.99 -0.08 11.40 16 16 O -0.56 -13.47 16.25 -13.53 -0.22 -13.69 16 17 C 0.11 2.29 2.24 -27.88 -0.06 2.22 16 18 H 0.09 1.72 6.09 -51.93 -0.32 1.41 16 19 O -0.21 -4.06 11.17 -33.01 -0.37 -4.42 16 20 N -0.67 -9.41 9.19 60.35 0.55 -8.85 16 21 C -0.15 -3.09 4.51 -90.62 -0.41 -3.50 16 22 C -0.11 -2.31 6.42 -26.73 -0.17 -2.48 16 23 C -0.19 -3.32 9.91 -26.73 -0.26 -3.58 16 24 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.67 8.03 -51.93 -0.42 1.26 16 30 H 0.09 1.55 7.51 -51.93 -0.39 1.16 16 31 H 0.05 1.17 7.60 -51.93 -0.39 0.77 16 32 H 0.03 0.80 4.75 -51.93 -0.25 0.56 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.33 4.06 9.06 -39.29 -0.36 3.70 16 35 H 0.36 4.02 9.25 -39.29 -0.36 3.65 16 36 H 0.09 2.03 8.11 -51.93 -0.42 1.61 16 37 H 0.09 1.85 6.52 -51.93 -0.34 1.52 16 38 H 0.10 2.27 7.00 -51.93 -0.36 1.90 16 39 H 0.10 1.70 6.83 -51.93 -0.35 1.34 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 325.88 15.07 4.91 4.91 Total: -1.00 -29.55 325.88 -6.02 -35.57 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.04 Total: 10.39 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 0.02 Total: 3.09 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.87 Total: -44.16 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.94 Total: -25.04 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.84 Total: 15.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.55 -6.02 -35.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708771913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.341 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds