Wall clock time and date at job start Mon Mar 30 2020 05:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99543 * 2 1 4 4 C 1.52997 * 109.46824 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47409 * 64.85748 * 4 3 2 6 6 C 1.46503 * 119.99720 * 264.92638 * 5 4 3 7 7 C 1.50697 * 109.47127 * 269.99566 * 6 5 4 8 8 H 1.08002 * 120.00259 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00116 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99928 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00068 * 180.02562 * 9 7 6 12 12 H 1.48510 * 109.47027 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47138 * 119.99715 * 11 9 7 14 14 H 1.48495 * 109.47290 * 239.99976 * 11 9 7 15 15 C 1.34771 * 120.00190 * 84.91985 * 5 4 3 16 16 O 1.21276 * 119.99860 * 5.39782 * 15 5 4 17 17 C 1.50703 * 119.99972 * 185.39177 * 15 5 4 18 18 H 1.09001 * 109.46950 * 40.24687 * 17 15 5 19 19 O 1.42901 * 109.46984 * 160.24887 * 17 15 5 20 20 N 1.46302 * 113.99988 * 205.00580 * 19 17 15 21 21 C 1.52999 * 109.47223 * 280.24642 * 17 15 5 22 22 C 1.53004 * 117.51567 * 111.28688 * 21 17 15 23 23 C 1.53006 * 117.49497 * 179.91419 * 21 17 15 24 24 H 1.08995 * 109.47307 * 299.99733 * 1 2 3 25 25 H 1.08994 * 109.47427 * 60.00205 * 1 2 3 26 26 H 1.08998 * 109.46813 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47048 * 60.00319 * 3 2 1 28 28 H 1.08997 * 109.47140 * 299.99570 * 3 2 1 29 29 H 1.09000 * 109.47387 * 304.85644 * 4 3 2 30 30 H 1.08998 * 109.47136 * 184.85646 * 4 3 2 31 31 H 1.09003 * 109.47643 * 29.99823 * 6 5 4 32 32 H 1.09002 * 109.47299 * 149.99547 * 6 5 4 33 33 H 0.97001 * 120.00127 * 180.02562 * 10 9 7 34 34 H 1.00897 * 111.00236 * 56.03907 * 20 19 17 35 35 H 1.00894 * 111.00012 * 180.02562 * 20 19 17 36 36 H 1.08999 * 115.55014 * 325.58396 * 21 17 15 37 37 H 1.08996 * 117.49560 * 214.97156 * 22 21 17 38 38 H 1.08997 * 117.50005 * 359.97438 * 22 21 17 39 39 H 1.08997 * 117.50536 * 359.97374 * 23 21 17 40 40 H 1.09004 * 117.49410 * 145.00262 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9754 0.5614 -1.2513 6 6 4.2121 -0.8833 -1.3059 7 6 5.6483 -1.1709 -0.9516 8 1 6.3180 -0.3586 -0.7102 9 6 6.1077 -2.4708 -0.9365 10 7 5.2927 -3.4597 -1.2319 11 14 7.8879 -2.8272 -0.4965 12 1 8.5914 -1.5516 -0.2078 13 1 7.9358 -3.7019 0.7026 14 1 8.5517 -3.5114 -1.6351 15 6 4.1624 1.3170 -2.3515 16 8 4.0619 2.5236 -2.2827 17 6 4.4966 0.6625 -3.6672 18 1 3.9048 -0.2457 -3.7819 19 8 4.1993 1.5630 -4.7362 20 7 3.9251 0.9020 -6.0122 21 6 5.9848 0.3087 -3.6974 22 6 6.3596 -1.1744 -3.6663 23 6 6.5239 -0.3707 -4.9579 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8516 0.5704 0.8424 30 1 3.9784 2.1768 0.0864 31 1 3.5551 -1.3863 -0.5964 32 1 4.0063 -1.2474 -2.3125 33 1 5.6158 -4.3743 -1.2209 34 1 3.1742 0.2345 -5.9197 35 1 3.7218 1.5778 -6.7333 36 1 6.6442 1.0055 -3.1799 37 1 7.2656 -1.4533 -3.1284 38 1 5.5458 -1.8983 -3.6239 39 1 5.8184 -0.5660 -5.7654 40 1 7.5381 -0.1209 -5.2696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708771913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:29 Heat of formation + Delta-G solvation = -61.675549 kcal Electronic energy + Delta-G solvation = -22817.077267 eV Core-core repulsion = 19441.817172 eV Total energy + Delta-G solvation = -3375.260095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.19219 -38.98459 -38.31438 -36.98322 -36.15797 -34.49722 -31.93385 -30.88270 -28.96838 -28.04397 -26.91958 -24.83083 -23.99498 -22.83984 -21.94064 -20.19012 -18.73050 -18.42388 -17.75769 -17.40449 -17.03321 -16.83042 -16.53246 -16.24300 -16.05508 -15.71919 -15.52206 -14.86224 -14.71348 -14.20423 -13.87649 -13.58890 -13.30380 -13.13267 -13.01500 -12.78039 -12.72241 -12.68792 -12.16676 -12.00821 -11.94364 -11.70202 -11.48280 -11.18642 -10.95985 -10.73182 -10.59044 -10.34006 -9.79858 -9.46400 -8.07431 -6.13584 1.40754 1.44320 1.47140 1.53037 1.63422 2.43697 2.57592 2.91244 3.19189 3.24937 3.73950 3.89776 3.97043 4.12609 4.16257 4.20601 4.37180 4.37441 4.51836 4.54597 4.60041 4.61540 4.75909 4.83713 4.87655 5.01453 5.04958 5.27924 5.34260 5.48555 5.55346 5.72211 5.87968 5.95186 6.17065 6.19532 6.26118 6.56281 6.90691 7.24617 7.52317 8.99232 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.009497 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.219787 B = 2947.519381 C = 4494.253766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.259 3.741 7 C -0.517 4.517 8 H 0.045 0.955 9 C 0.045 3.955 10 N -0.911 5.911 11 Si 0.926 3.074 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.517 3.483 16 O -0.588 6.588 17 C 0.127 3.873 18 H 0.087 0.913 19 O -0.241 6.241 20 N -0.658 5.658 21 C -0.165 4.165 22 C -0.120 4.120 23 C -0.155 4.155 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.348 0.652 35 H 0.377 0.623 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 4.372 -3.824 8.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C -0.021 4.021 4 C -0.008 4.008 5 N -0.313 5.313 6 C 0.139 3.861 7 C -0.556 4.556 8 H 0.063 0.937 9 C -0.155 4.155 10 N -0.551 5.551 11 Si 0.753 3.247 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.304 3.696 16 O -0.470 6.470 17 C 0.066 3.934 18 H 0.104 0.896 19 O -0.253 6.253 20 N -0.230 5.230 21 C -0.184 4.184 22 C -0.157 4.157 23 C -0.191 4.191 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.193 0.807 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.503 4.567 -3.728 8.064 hybrid contribution -0.226 0.052 0.542 0.589 sum -5.729 4.619 -3.186 8.019 Atomic orbital electron populations 1.22886 0.79907 1.03488 1.00604 1.87991 1.21220 1.28096 1.95484 1.22911 0.93480 0.84836 1.00869 1.21534 0.92890 0.99487 0.86853 1.48063 1.63639 1.10437 1.09119 1.19173 0.95625 0.73910 0.97370 1.21384 0.95617 0.92048 1.46525 0.93677 1.25198 0.99567 0.95801 0.94971 1.69985 1.36053 0.99705 1.49369 0.86016 0.82569 0.78022 0.78061 1.20043 1.21197 1.20009 1.20447 0.76282 0.86540 0.86335 1.90570 1.54483 1.15318 1.86598 1.21086 0.95521 0.92276 0.84549 0.89575 1.90722 1.91190 1.27283 1.16102 1.64376 1.49613 1.16626 0.92400 1.22043 0.94049 0.97383 1.04969 1.22603 1.02297 0.92049 0.98769 1.23153 1.02197 1.02285 0.91508 0.92398 0.94083 0.88997 0.89772 0.94465 0.89357 0.89267 0.95715 0.95557 0.92633 0.84066 0.80724 0.90467 0.90815 0.89575 0.86704 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -14.02 10.08 -148.98 -1.50 -15.52 16 3 C 0.06 1.80 6.25 71.98 0.45 2.25 16 4 C 0.12 4.28 5.79 86.38 0.50 4.78 16 5 N -0.58 -25.00 2.41 -826.16 -1.99 -26.99 16 6 C 0.26 12.23 4.58 85.63 0.39 12.62 16 7 C -0.52 -25.77 6.31 25.60 0.16 -25.60 16 8 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 9 C 0.05 2.27 4.11 84.66 0.35 2.62 16 10 N -0.91 -47.80 13.29 21.45 0.28 -47.51 16 11 Si 0.93 41.00 28.45 68.60 1.95 42.95 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C 0.52 22.81 6.88 87.66 0.60 23.42 16 16 O -0.59 -28.22 16.25 15.23 0.25 -27.97 16 17 C 0.13 5.06 2.24 29.85 0.07 5.12 16 18 H 0.09 3.39 6.09 -2.39 -0.01 3.37 16 19 O -0.24 -8.97 11.17 -31.91 -0.36 -9.32 16 20 N -0.66 -16.94 9.19 37.02 0.34 -16.60 16 21 C -0.17 -6.57 4.51 -10.79 -0.05 -6.62 16 22 C -0.12 -4.80 6.42 30.60 0.20 -4.61 16 23 C -0.15 -5.19 9.91 30.60 0.30 -4.89 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 3.28 8.03 -2.39 -0.02 3.26 16 30 H 0.09 3.22 7.51 -2.39 -0.02 3.20 16 31 H 0.02 1.28 7.60 -2.39 -0.02 1.26 16 32 H 0.03 1.29 4.75 -2.39 -0.01 1.28 16 33 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 34 H 0.35 7.65 9.06 -89.70 -0.81 6.84 16 35 H 0.38 7.43 9.25 -89.70 -0.83 6.60 16 36 H 0.08 3.33 8.11 -2.39 -0.02 3.31 16 37 H 0.07 3.13 6.52 -2.39 -0.02 3.11 16 38 H 0.09 3.77 7.00 -2.39 -0.02 3.76 16 39 H 0.11 3.55 6.83 -2.39 -0.02 3.53 16 40 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 Total: -1.00 -62.48 325.88 2.61 -59.87 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: -0.58 Total: 30.10 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.22 Total: 11.00 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -1.37 Total: -91.10 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.61 Total: -52.81 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.95 Total: 42.95 kcal Total: -62.48 2.61 -59.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708771913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.807 kcal (2) G-P(sol) polarization free energy of solvation -62.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds