Wall clock time and date at job start Mon Mar 30 2020 05:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00444 * 2 1 4 4 C 1.52996 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46776 * 65.00504 * 4 3 2 6 6 C 1.46500 * 119.99930 * 275.56952 * 5 4 3 7 7 C 1.50697 * 109.47334 * 270.00080 * 6 5 4 8 8 H 1.08002 * 119.99651 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00263 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00040 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00169 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46747 * 59.99857 * 11 9 7 13 13 H 1.48504 * 109.46931 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46922 * 299.99871 * 11 9 7 15 15 C 1.34772 * 120.00121 * 95.56939 * 5 4 3 16 16 O 1.21286 * 119.99777 * 184.69498 * 15 5 4 17 17 C 1.50702 * 120.00225 * 4.69382 * 15 5 4 18 18 H 1.08995 * 109.46635 * 310.64167 * 17 15 5 19 19 O 1.42895 * 109.47082 * 190.64115 * 17 15 5 20 20 N 1.46305 * 114.00069 * 85.00309 * 19 17 15 21 21 C 1.52999 * 109.46752 * 70.64202 * 17 15 5 22 22 C 1.53001 * 117.49546 * 243.60388 * 21 17 15 23 23 C 1.52997 * 117.49448 * 174.94867 * 21 17 15 24 24 H 1.09007 * 109.46577 * 299.99578 * 1 2 3 25 25 H 1.08996 * 109.47268 * 59.98898 * 1 2 3 26 26 H 1.08992 * 109.47589 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46771 * 60.00412 * 3 2 1 28 28 H 1.08999 * 109.47430 * 300.00705 * 3 2 1 29 29 H 1.09002 * 109.47240 * 305.00796 * 4 3 2 30 30 H 1.08996 * 109.47572 * 185.00165 * 4 3 2 31 31 H 1.09009 * 109.47243 * 29.99963 * 6 5 4 32 32 H 1.08998 * 109.47561 * 149.99819 * 6 5 4 33 33 H 0.97004 * 119.99880 * 180.02562 * 10 9 7 34 34 H 1.00901 * 110.99979 * 56.03713 * 20 19 17 35 35 H 1.00896 * 111.00121 * 179.97438 * 20 19 17 36 36 H 1.08994 * 115.55497 * 29.27649 * 21 17 15 37 37 H 1.09003 * 117.50073 * 0.02562 * 22 21 17 38 38 H 1.09000 * 117.49965 * 145.01986 * 22 21 17 39 39 H 1.09003 * 117.49545 * 214.97765 * 23 21 17 40 40 H 1.08996 * 117.50222 * 359.96910 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2510 6 6 3.9895 -0.8953 -1.3803 7 6 5.3286 -1.4270 -0.9386 8 1 6.0938 -0.7460 -0.5963 9 6 5.5774 -2.7827 -0.9726 10 7 4.6458 -3.6120 -1.3899 11 14 7.2377 -3.4417 -0.4258 12 1 7.4758 -3.0686 0.9917 13 1 7.2510 -4.9208 -0.5580 14 1 8.3061 -2.8595 -1.2772 15 6 4.3707 1.3354 -2.2834 16 8 4.6545 0.8263 -3.3471 17 6 4.4586 2.8305 -2.1164 18 1 3.5348 3.2013 -1.6722 19 8 4.6521 3.4419 -3.3933 20 7 3.4121 3.6865 -4.1301 21 6 5.6372 3.1731 -1.2029 22 6 5.3226 3.8532 0.1310 23 6 5.9687 4.6532 -1.0027 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8898 26 1 -0.3634 -1.0276 0.0005 27 1 1.6888 1.8462 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8508 0.5682 0.8426 30 1 3.9786 2.1763 0.0902 31 1 3.2050 -1.3224 -0.7554 32 1 3.8149 -1.1695 -2.4206 33 1 4.8208 -4.5658 -1.4135 34 1 2.7724 4.2457 -3.5859 35 1 3.6007 4.1184 -5.0223 36 1 6.4693 2.4695 -1.2252 37 1 4.2760 4.0562 0.3581 38 1 5.9480 3.5972 0.9863 39 1 7.0191 4.9233 -0.8930 40 1 5.3476 5.3829 -1.5222 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708771914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:32 Heat of formation + Delta-G solvation = -40.836807 kcal Electronic energy + Delta-G solvation = -22461.159380 eV Core-core repulsion = 19086.802921 eV Total energy + Delta-G solvation = -3374.356459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.63555 -37.64195 -37.06806 -35.83815 -34.52533 -32.55147 -30.17122 -29.50657 -27.96806 -26.23434 -25.74295 -22.92024 -22.57414 -22.28456 -20.84497 -18.67703 -17.13864 -16.72868 -16.38217 -16.22344 -16.03889 -15.47718 -15.05904 -14.81109 -14.60551 -14.29009 -13.92574 -13.48016 -13.25732 -12.79034 -12.26330 -12.12189 -11.85225 -11.66285 -11.54510 -11.41141 -11.15973 -10.98571 -10.84169 -10.78551 -10.47727 -10.31263 -10.20506 -10.00007 -9.48989 -9.37245 -9.13834 -8.38006 -8.27137 -7.46774 -5.88871 -3.92714 2.74353 3.39449 3.43708 3.44577 3.50185 3.77446 4.02272 4.10745 4.54637 4.72229 4.77910 4.81053 4.95134 5.16213 5.32984 5.43443 5.44608 5.49384 5.50134 5.52412 5.57037 5.63649 5.66721 5.76746 5.80677 5.92136 5.99093 6.17704 6.30972 6.84836 7.10129 7.41244 7.47333 7.70100 7.75078 8.10480 8.42322 8.61322 9.06401 9.27019 9.70682 11.19064 Molecular weight = 272.16amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.007130 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.856143 B = 3925.960519 C = 4797.947694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.100 3.900 5 N -0.587 5.587 6 C 0.248 3.752 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.491 3.509 16 O -0.517 6.517 17 C 0.105 3.895 18 H 0.077 0.923 19 O -0.205 6.205 20 N -0.669 5.669 21 C -0.148 4.148 22 C -0.172 4.172 23 C -0.163 4.163 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.262 0.738 34 H 0.331 0.669 35 H 0.365 0.635 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.777 17.735 4.672 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C -0.034 4.034 4 C -0.025 4.025 5 N -0.321 5.321 6 C 0.130 3.870 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.276 3.724 16 O -0.392 6.392 17 C 0.043 3.957 18 H 0.095 0.905 19 O -0.218 6.218 20 N -0.236 5.236 21 C -0.168 4.168 22 C -0.209 4.209 23 C -0.200 4.200 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.179 0.821 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.454 16.324 3.950 17.658 hybrid contribution 0.628 0.806 0.470 1.125 sum -4.826 17.130 4.419 18.338 Atomic orbital electron populations 1.22702 0.82196 1.02631 0.98985 1.88140 1.18610 1.26714 1.95076 1.23115 0.95534 0.85621 0.99157 1.21780 0.91172 0.99680 0.89870 1.48129 1.63122 1.09410 1.11414 1.19315 0.97045 0.71914 0.98768 1.21447 0.99403 0.91962 1.43497 0.92779 1.24908 0.96838 0.96823 0.95499 1.69944 1.33159 1.03052 1.47123 0.86631 0.84547 0.77678 0.78938 1.20361 1.21269 1.20334 1.20625 0.78785 0.88286 0.84721 1.90675 1.47979 1.74243 1.26264 1.21545 0.97332 0.92612 0.84237 0.90495 1.90762 1.18975 1.80617 1.31429 1.64355 1.00614 1.55205 1.03433 1.22188 1.00207 0.97160 0.97210 1.23139 1.01991 1.03581 0.92171 1.22884 1.01873 0.93508 1.01762 0.94797 0.94628 0.89733 0.93282 0.94000 0.89266 0.89246 0.93315 0.94379 0.92878 0.85919 0.82061 0.86132 0.88390 0.87627 0.88365 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.60 9.03 -35.23 -0.32 -6.91 16 3 C 0.04 0.65 6.28 37.16 0.23 0.88 16 4 C 0.10 1.67 5.54 -4.04 -0.02 1.64 16 5 N -0.59 -13.02 2.45 -175.06 -0.43 -13.45 16 6 C 0.25 6.88 5.02 -5.19 -0.03 6.85 16 7 C -0.52 -15.43 9.39 -34.44 -0.32 -15.75 16 8 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.65 13.29 55.43 0.74 -26.92 16 11 Si 0.89 22.55 29.54 -169.99 -5.02 17.53 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 15 C 0.49 10.98 6.96 -10.99 -0.08 10.90 16 16 O -0.52 -14.28 16.09 -14.13 -0.23 -14.51 16 17 C 0.11 1.72 2.21 -27.88 -0.06 1.66 16 18 H 0.08 1.04 7.02 -51.93 -0.36 0.68 16 19 O -0.21 -3.46 10.98 -33.61 -0.37 -3.83 16 20 N -0.67 -9.02 10.78 60.35 0.65 -8.37 16 21 C -0.15 -2.08 4.76 -90.62 -0.43 -2.51 16 22 C -0.17 -1.73 8.34 -26.69 -0.22 -1.95 16 23 C -0.16 -1.71 10.07 -26.70 -0.27 -1.98 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 30 H 0.09 1.19 2.84 -51.93 -0.15 1.04 16 31 H 0.05 1.40 6.62 -51.92 -0.34 1.05 16 32 H 0.04 1.21 7.36 -51.93 -0.38 0.83 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 34 H 0.33 3.28 9.06 -39.29 -0.36 2.92 16 35 H 0.37 3.96 9.25 -39.29 -0.36 3.60 16 36 H 0.12 1.98 8.07 -51.93 -0.42 1.56 16 37 H 0.10 0.82 7.42 -51.93 -0.39 0.43 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -37.67 335.50 -6.21 -43.89 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.11 Total: 4.52 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.18 Total: 3.00 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.96 Total: -48.73 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.91 Total: -25.25 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.67 -6.21 -43.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708771914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.049 kcal (2) G-P(sol) polarization free energy of solvation -37.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds